Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99731 * 2 1 4 4 C 1.52999 * 109.47018 * 184.49184 * 3 2 1 5 5 N 1.46903 * 109.46758 * 68.97424 * 4 3 2 6 6 C 1.46900 * 111.00170 * 290.60214 * 5 4 3 7 7 C 1.50704 * 109.47098 * 172.68752 * 6 5 4 8 8 H 1.07998 * 119.99650 * 4.39545 * 7 6 5 9 9 C 1.37877 * 120.00120 * 184.40096 * 7 6 5 10 10 N 1.31517 * 119.99661 * 354.69332 * 9 7 6 11 11 Si 1.86797 * 120.00301 * 174.69919 * 9 7 6 12 12 H 1.48499 * 109.47281 * 94.98346 * 11 9 7 13 13 H 1.48495 * 109.47014 * 214.98832 * 11 9 7 14 14 H 1.48501 * 109.46910 * 334.98370 * 11 9 7 15 15 C 1.46908 * 110.99593 * 166.65316 * 5 4 3 16 16 C 1.50699 * 109.47024 * 293.95070 * 15 5 4 17 17 C 1.38261 * 120.00300 * 260.25514 * 16 15 5 18 18 C 1.38209 * 120.07136 * 180.25978 * 17 16 15 19 19 C 1.38256 * 120.06998 * 359.73704 * 18 17 16 20 20 C 1.38366 * 120.00083 * 0.02562 * 19 18 17 21 21 F 1.35103 * 120.03636 * 179.97438 * 20 19 18 22 22 C 1.38370 * 119.99937 * 80.00201 * 16 15 5 23 23 F 1.35101 * 120.03143 * 0.02562 * 22 16 15 24 24 H 1.08999 * 109.46883 * 64.88451 * 1 2 3 25 25 H 1.09001 * 109.46788 * 184.87867 * 1 2 3 26 26 H 1.09002 * 109.47217 * 304.87922 * 1 2 3 27 27 H 1.08996 * 109.47492 * 64.48727 * 3 2 1 28 28 H 1.09004 * 109.47216 * 304.48998 * 3 2 1 29 29 H 1.09000 * 109.47260 * 308.97449 * 4 3 2 30 30 H 1.08997 * 109.46967 * 188.97297 * 4 3 2 31 31 H 1.08999 * 109.47538 * 292.69015 * 6 5 4 32 32 H 1.08998 * 109.46528 * 52.69173 * 6 5 4 33 33 H 0.97003 * 119.99858 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46734 * 173.95270 * 15 5 4 35 35 H 1.08996 * 109.46970 * 53.95587 * 15 5 4 36 36 H 1.07996 * 119.96415 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.96613 * 179.76907 * 18 17 16 38 38 H 1.08001 * 119.99906 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5314 1.1865 -0.1130 5 7 3.8860 0.6944 -1.4509 6 6 3.4826 -0.7079 -1.6201 7 6 3.6966 -1.1228 -3.0531 8 1 4.1584 -0.4391 -3.7499 9 6 3.3029 -2.3752 -3.4743 10 7 2.8370 -3.2451 -2.6049 11 14 3.4314 -2.8366 -5.2799 12 1 4.7130 -3.5475 -5.5192 13 1 2.2977 -3.7230 -5.6461 14 1 3.3855 -1.6059 -6.1097 15 6 5.3219 0.8642 -1.7108 16 6 5.6514 2.3335 -1.7702 17 6 5.7868 2.9627 -2.9939 18 6 6.0942 4.3090 -3.0501 19 6 6.2616 5.0307 -1.8828 20 6 6.1219 4.4051 -0.6565 21 9 6.2858 5.1095 0.4846 22 6 5.8131 3.0541 -0.6001 23 9 5.6764 2.4410 0.5960 24 1 -0.3633 0.4362 -0.9305 25 1 -0.3633 -1.0240 0.0874 26 1 -0.3634 0.5877 0.8431 27 1 1.7537 1.8174 0.9274 28 1 1.6264 1.8741 -0.8470 29 1 3.8982 0.4887 0.6398 30 1 3.9851 2.1646 0.0465 31 1 4.0824 -1.3401 -0.9654 32 1 2.4287 -0.8161 -1.3641 33 1 2.5603 -4.1263 -2.9011 34 1 5.5769 0.3959 -2.6615 35 1 5.8939 0.3956 -0.9100 36 1 5.6568 2.4006 -3.9068 37 1 6.2033 4.7979 -4.0068 38 1 6.5014 6.0828 -1.9280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071230882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = -91.040994 kcal Electronic energy + Delta-G solvation = -23152.906083 eV Core-core repulsion = 19439.340289 eV Total energy + Delta-G solvation = -3713.565794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.46833 -48.53966 -39.08115 -37.70657 -35.90217 -32.61062 -31.53082 -30.23134 -29.34720 -26.95234 -25.85161 -24.69440 -22.81328 -22.11320 -21.91171 -19.82790 -17.78365 -17.13026 -16.95104 -16.71657 -16.13245 -15.79541 -15.52959 -15.11578 -14.77828 -14.69723 -14.57696 -14.18213 -13.78779 -13.52863 -13.41790 -12.64569 -12.58030 -12.08870 -11.96604 -11.82409 -11.59551 -11.25408 -11.16378 -10.91736 -10.78544 -10.65978 -10.46501 -10.37249 -9.77251 -9.26012 -8.92776 -8.67775 -8.62485 -8.30515 -7.22640 -5.94143 -3.94347 1.00145 1.06954 3.33166 3.40342 3.43248 3.44611 3.84390 4.37500 4.43118 4.47208 4.64727 4.82543 4.98629 5.13504 5.14387 5.41300 5.57655 5.71570 5.76384 5.81156 5.84941 5.86232 5.87982 6.00154 6.08655 6.14794 6.22145 6.25952 6.41289 6.46458 6.60787 6.83949 7.45866 7.55480 7.76352 7.84385 8.26554 8.33761 8.62025 9.13145 9.67211 11.16200 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.005738 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.183553 B = 4878.446720 C = 6137.863980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.069 3.931 4 C 0.036 3.964 5 N -0.525 5.525 6 C 0.179 3.821 7 C -0.510 4.510 8 H 0.059 0.941 9 C 0.057 3.943 10 N -0.892 5.892 11 Si 0.891 3.109 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.092 3.908 16 C -0.063 4.063 17 C -0.084 4.084 18 C -0.101 4.101 19 C -0.139 4.139 20 C 0.062 3.938 21 F -0.135 7.135 22 C 0.062 3.938 23 F -0.124 7.124 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.029 0.971 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.084 0.916 31 H -0.016 1.016 32 H 0.079 0.921 33 H 0.259 0.741 34 H 0.105 0.895 35 H 0.037 0.963 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 14.795 2.162 15.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C -0.008 4.008 4 C -0.092 4.092 5 N -0.250 5.250 6 C 0.055 3.945 7 C -0.549 4.549 8 H 0.077 0.923 9 C -0.144 4.144 10 N -0.531 5.531 11 Si 0.719 3.281 12 H -0.210 1.210 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.036 4.036 16 C -0.065 4.065 17 C -0.103 4.103 18 C -0.119 4.119 19 C -0.158 4.158 20 C 0.042 3.958 21 F -0.113 7.113 22 C 0.041 3.959 23 F -0.102 7.102 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.002 0.998 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.326 14.695 1.934 15.191 hybrid contribution 0.225 -0.568 0.126 0.624 sum 3.552 14.128 2.060 14.712 Atomic orbital electron populations 1.22640 0.82576 1.02173 0.98962 1.88166 1.18526 1.27120 1.94719 1.22508 0.94254 0.85272 0.98761 1.22605 0.93828 1.00767 0.92023 1.62375 1.12330 1.25889 1.24358 1.20217 0.98986 0.79340 0.95941 1.21201 1.39524 0.98819 0.95309 0.92257 1.24944 0.95743 0.96419 0.97293 1.69998 1.43789 1.05920 1.33424 0.86606 0.77472 0.78321 0.85708 1.20982 1.21302 1.19850 1.21035 0.91120 0.87959 1.03482 1.20256 0.97107 0.98183 0.90916 1.21144 0.97242 0.94337 0.97563 1.21078 0.98788 0.94114 0.97914 1.20978 1.03481 1.01067 0.90313 1.17663 1.06409 0.88594 0.83139 1.91500 1.93335 1.78158 1.48348 1.17595 1.06657 0.89654 0.81956 1.91454 1.92809 1.82727 1.43251 0.94387 0.90058 0.95277 0.94324 0.92891 0.94722 0.89775 0.99782 0.90353 0.93133 0.87664 0.94497 0.83883 0.84478 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.66 16 2 O -0.37 -7.60 7.59 -35.23 -0.27 -7.87 16 3 C 0.07 1.26 6.17 37.16 0.23 1.49 16 4 C 0.04 0.71 4.47 -3.82 -0.02 0.69 16 5 N -0.52 -11.40 4.48 -237.51 -1.07 -12.46 16 6 C 0.18 4.72 4.42 -4.97 -0.02 4.70 16 7 C -0.51 -14.10 8.45 -34.44 -0.29 -14.39 16 8 H 0.06 1.58 6.82 -52.49 -0.36 1.22 16 9 C 0.06 1.62 5.45 -17.82 -0.10 1.52 16 10 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 11 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.09 1.76 4.84 -4.97 -0.02 1.74 16 16 C -0.06 -1.00 5.19 -104.57 -0.54 -1.54 16 17 C -0.08 -1.10 9.67 -39.58 -0.38 -1.49 16 18 C -0.10 -1.06 10.04 -39.59 -0.40 -1.45 16 19 C -0.14 -1.52 10.02 -39.53 -0.40 -1.92 16 20 C 0.06 0.85 7.31 -39.37 -0.29 0.56 16 21 F -0.13 -1.90 17.18 2.25 0.04 -1.86 16 22 C 0.06 0.96 5.95 -39.37 -0.23 0.73 16 23 F -0.12 -2.09 13.77 2.25 0.03 -2.06 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.08 1.51 3.84 -51.93 -0.20 1.31 16 31 H -0.02 -0.46 8.14 -51.93 -0.42 -0.88 16 32 H 0.08 2.22 4.96 -51.93 -0.26 1.96 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.11 2.10 6.23 -51.93 -0.32 1.77 16 35 H 0.04 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.14 1.76 8.04 -52.49 -0.42 1.34 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -31.14 319.34 -6.99 -38.13 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.91 Total: -1.44 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.35 Total: -7.70 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.33 Total: -38.35 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.27 Total: -7.87 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.07 Total: -3.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.14 -6.99 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071230882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.908 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds