Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00260 * 2 1 4 4 H 1.48502 * 109.47087 * 270.00454 * 3 2 1 5 5 H 1.48505 * 109.47107 * 30.00350 * 3 2 1 6 6 H 1.48508 * 109.47149 * 150.00267 * 3 2 1 7 7 C 1.37881 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99980 * 359.97438 * 7 2 1 9 9 C 1.50692 * 119.99931 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47278 * 176.18611 * 9 7 2 11 11 C 1.46897 * 110.99861 * 75.76196 * 10 9 7 12 12 C 1.50700 * 109.47163 * 190.00240 * 11 10 9 13 13 N 1.30508 * 125.65082 * 270.27490 * 12 11 10 14 14 C 1.34124 * 109.25505 * 180.14599 * 13 12 11 15 15 C 1.34667 * 108.02190 * 359.61541 * 14 13 12 16 16 N 1.35046 * 125.65485 * 89.99937 * 12 11 10 17 17 C 1.46500 * 126.39221 * 359.97438 * 16 12 11 18 18 F 1.39899 * 109.47401 * 210.02828 * 17 16 12 19 19 F 1.39901 * 109.47654 * 330.02810 * 17 16 12 20 20 C 1.46901 * 111.00300 * 199.71502 * 10 9 7 21 21 C 1.53005 * 109.47067 * 71.68425 * 20 10 9 22 22 C 1.52996 * 117.49927 * 244.11942 * 21 20 10 23 23 C 1.52999 * 117.49829 * 175.45774 * 21 20 10 24 24 H 0.97001 * 119.99773 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47326 * 56.18699 * 9 7 2 26 26 H 1.09000 * 109.47309 * 296.19105 * 9 7 2 27 27 H 1.08999 * 109.47524 * 70.00272 * 11 10 9 28 28 H 1.09001 * 109.47504 * 309.99720 * 11 10 9 29 29 H 1.08004 * 125.98446 * 179.88039 * 14 13 12 30 30 H 1.08006 * 126.59010 * 180.24358 * 15 14 13 31 31 H 1.09000 * 109.46952 * 90.02912 * 17 16 12 32 32 H 1.08998 * 109.47637 * 191.68648 * 20 10 9 33 33 H 1.09006 * 109.47020 * 311.68698 * 20 10 9 34 34 H 1.08998 * 115.54447 * 29.79447 * 21 20 10 35 35 H 1.09001 * 117.50294 * 0.02562 * 22 21 20 36 36 H 1.09002 * 117.49990 * 145.02548 * 22 21 20 37 37 H 1.08993 * 117.50013 * 214.98278 * 23 21 20 38 38 H 1.09000 * 117.50000 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 4.0011 -2.5762 0.0905 11 6 3.8580 -3.2717 -1.1954 12 6 4.1355 -4.7407 -1.0056 13 7 5.3033 -5.3139 -1.1097 14 6 5.1728 -6.6287 -0.8794 15 6 3.8763 -6.8786 -0.6145 16 7 3.2178 -5.6813 -0.6945 17 6 1.7852 -5.4612 -0.4817 18 9 1.2995 -6.4019 0.4329 19 9 1.5812 -4.1723 0.0226 20 6 5.3939 -2.6114 0.5560 21 6 5.4456 -2.2392 2.0392 22 6 6.1881 -0.9570 2.4203 23 6 6.8025 -2.3218 2.7413 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6226 0.8527 26 1 3.8745 -0.7405 -0.9233 27 1 4.5664 -2.8579 -1.9131 28 1 2.8427 -3.1391 -1.5693 29 1 5.9688 -7.3584 -0.8985 30 1 3.4399 -7.8392 -0.3832 31 1 1.2564 -5.5687 -1.4288 32 1 5.7976 -3.6146 0.4188 33 1 5.9870 -1.8995 -0.0182 34 1 4.5614 -2.5006 2.6204 35 1 6.6395 -0.3782 1.6144 36 1 5.7927 -0.3748 3.2526 37 1 6.8108 -2.6370 3.7847 38 1 7.6584 -2.6408 2.1466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = 12.934607 kcal Electronic energy + Delta-G solvation = -23596.020607 eV Core-core repulsion = 19919.256285 eV Total energy + Delta-G solvation = -3676.764323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.00949 -47.08070 -41.90133 -37.84124 -35.55696 -33.29442 -32.48181 -30.30588 -28.09212 -26.89246 -25.72994 -23.71604 -22.04826 -21.40463 -21.04331 -20.13433 -19.56879 -18.06317 -17.81644 -17.01718 -16.65828 -15.48638 -15.20773 -14.67857 -14.52816 -14.27540 -14.11582 -13.80999 -13.69138 -13.43907 -13.40922 -13.15312 -12.78450 -12.31054 -12.16083 -11.93057 -11.60321 -11.46088 -11.22087 -10.80669 -10.67278 -10.46234 -10.00547 -9.95008 -9.85254 -9.75587 -9.35497 -9.22233 -8.54778 -8.33550 -7.44561 -6.02216 -3.98593 1.93653 2.35590 3.19683 3.29428 3.37931 3.40669 3.74325 4.17533 4.34011 4.45049 4.53486 4.65393 4.75549 4.81459 5.22796 5.29778 5.31934 5.40002 5.51928 5.61160 5.87895 5.90209 5.90473 6.09755 6.16648 6.18883 6.28402 6.36703 6.42505 6.71049 6.74818 6.86527 6.93962 7.04316 7.65217 7.88467 7.95637 8.16403 8.68685 9.14098 9.60489 11.10470 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.007332 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.638322 B = 3817.958276 C = 5191.072746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.867 3.133 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.510 4.510 8 H 0.095 0.905 9 C 0.162 3.838 10 N -0.515 5.515 11 C 0.136 3.864 12 C 0.257 3.743 13 N -0.488 5.488 14 C -0.021 4.021 15 C -0.055 4.055 16 N -0.505 5.505 17 C 0.474 3.526 18 F -0.189 7.189 19 F -0.135 7.135 20 C 0.079 3.921 21 C -0.129 4.129 22 C -0.184 4.184 23 C -0.185 4.185 24 H 0.262 0.738 25 H 0.039 0.961 26 H -0.015 1.015 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.171 0.829 30 H 0.176 0.824 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.026 0.974 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -11.439 -1.216 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.695 3.305 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.548 4.548 8 H 0.113 0.887 9 C 0.036 3.964 10 N -0.240 5.240 11 C 0.007 3.993 12 C -0.006 4.006 13 N -0.207 5.207 14 C -0.168 4.168 15 C -0.186 4.186 16 N -0.199 5.199 17 C 0.339 3.661 18 F -0.170 7.170 19 F -0.116 7.116 20 C -0.050 4.050 21 C -0.148 4.148 22 C -0.221 4.221 23 C -0.223 4.223 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.003 0.997 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.188 0.812 30 H 0.193 0.807 31 H 0.162 0.838 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.763 -11.130 -0.996 13.607 hybrid contribution 0.057 0.883 -0.091 0.889 sum 7.821 -10.247 -1.087 12.936 Atomic orbital electron populations 1.69887 1.06041 1.26639 1.51519 1.24870 0.94662 0.98582 0.95067 0.86981 0.80622 0.84482 0.78431 1.20472 1.21323 1.18987 1.21296 0.88728 0.95209 1.49592 0.88731 1.20272 0.97231 0.83447 0.95455 1.61887 1.17824 1.18999 1.25257 1.20496 1.03220 0.82909 0.92716 1.23605 0.83038 0.93627 1.00317 1.70331 1.21966 1.06937 1.21475 1.22304 0.94929 0.93366 1.06158 1.22583 0.94082 0.90017 1.11870 1.46795 1.08948 1.09667 1.54502 1.21589 0.79707 0.74219 0.90536 1.93071 1.87198 1.65918 1.70829 1.93389 1.93684 1.35557 1.88972 1.21757 0.89960 1.00891 0.92361 1.22258 0.95253 1.00476 0.96769 1.23001 1.04824 0.90884 1.03392 1.22922 0.97276 1.01227 1.00857 0.92818 0.94344 0.99732 0.92549 0.87799 0.81183 0.80664 0.83834 0.90075 0.95596 0.87085 0.89333 0.89226 0.89324 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 21.14 27.55 -169.99 -4.68 16.46 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.26 6.43 56.52 0.36 -5.89 16 7 C -0.51 -13.77 9.16 -34.44 -0.32 -14.09 16 8 H 0.09 2.68 5.27 -52.48 -0.28 2.40 16 9 C 0.16 3.79 3.68 -4.98 -0.02 3.77 16 10 N -0.52 -10.55 4.08 -237.52 -0.97 -11.52 16 11 C 0.14 2.52 4.28 -4.98 -0.02 2.50 16 12 C 0.26 4.36 6.50 -155.41 -1.01 3.35 16 13 N -0.49 -8.16 10.11 -10.81 -0.11 -8.27 16 14 C -0.02 -0.29 11.87 -17.81 -0.21 -0.50 16 15 C -0.06 -0.71 11.16 -16.57 -0.18 -0.89 16 16 N -0.50 -7.56 3.14 -119.65 -0.38 -7.93 16 17 C 0.47 6.65 6.35 59.85 0.38 7.03 16 18 F -0.19 -2.64 17.04 2.25 0.04 -2.60 16 19 F -0.14 -2.57 12.37 2.25 0.03 -2.55 16 20 C 0.08 1.45 5.11 -3.82 -0.02 1.43 16 21 C -0.13 -2.25 4.96 -90.62 -0.45 -2.70 16 22 C -0.18 -2.91 9.97 -26.69 -0.27 -3.17 16 23 C -0.19 -2.66 10.25 -26.69 -0.27 -2.94 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.04 0.93 5.72 -51.93 -0.30 0.63 16 26 H -0.01 -0.35 7.62 -51.93 -0.40 -0.75 16 27 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 28 H 0.10 1.99 6.23 -51.93 -0.32 1.67 16 29 H 0.17 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.18 1.67 8.06 -52.48 -0.42 1.24 16 31 H 0.15 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.08 1.50 6.06 -51.93 -0.31 1.18 16 33 H 0.03 0.47 7.79 -51.93 -0.40 0.07 16 34 H 0.11 2.13 8.14 -51.93 -0.42 1.71 16 35 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -31.35 317.62 -7.98 -39.33 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.98 Total: 2.75 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.49 Total: -4.37 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.68 Total: -53.82 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.07 Total: -5.15 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.68 Total: 16.46 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.35 -7.98 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.265 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds