Wall clock time and date at job start Tue Mar 31 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00260 * 2 1 4 4 H 1.48502 * 109.47087 * 270.00454 * 3 2 1 5 5 H 1.48505 * 109.47107 * 30.00350 * 3 2 1 6 6 H 1.48508 * 109.47149 * 150.00267 * 3 2 1 7 7 C 1.37881 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99980 * 359.97438 * 7 2 1 9 9 C 1.50692 * 119.99931 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47278 * 176.18611 * 9 7 2 11 11 C 1.46897 * 110.99861 * 75.76196 * 10 9 7 12 12 C 1.50700 * 109.47163 * 190.00240 * 11 10 9 13 13 N 1.30508 * 125.65082 * 270.27490 * 12 11 10 14 14 C 1.34124 * 109.25505 * 180.14599 * 13 12 11 15 15 C 1.34667 * 108.02190 * 359.61541 * 14 13 12 16 16 N 1.35046 * 125.65485 * 89.99937 * 12 11 10 17 17 C 1.46500 * 126.39221 * 359.97438 * 16 12 11 18 18 F 1.39899 * 109.47401 * 210.02828 * 17 16 12 19 19 F 1.39901 * 109.47654 * 330.02810 * 17 16 12 20 20 C 1.46901 * 111.00300 * 199.71502 * 10 9 7 21 21 C 1.53005 * 109.47067 * 71.68425 * 20 10 9 22 22 C 1.52996 * 117.49927 * 244.11942 * 21 20 10 23 23 C 1.52999 * 117.49829 * 175.45774 * 21 20 10 24 24 H 0.97001 * 119.99773 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47326 * 56.18699 * 9 7 2 26 26 H 1.09000 * 109.47309 * 296.19105 * 9 7 2 27 27 H 1.08999 * 109.47524 * 70.00272 * 11 10 9 28 28 H 1.09001 * 109.47504 * 309.99720 * 11 10 9 29 29 H 1.08004 * 125.98446 * 179.88039 * 14 13 12 30 30 H 1.08006 * 126.59010 * 180.24358 * 15 14 13 31 31 H 1.09000 * 109.46952 * 90.02912 * 17 16 12 32 32 H 1.08998 * 109.47637 * 191.68648 * 20 10 9 33 33 H 1.09006 * 109.47020 * 311.68698 * 20 10 9 34 34 H 1.08998 * 115.54447 * 29.79447 * 21 20 10 35 35 H 1.09001 * 117.50294 * 0.02562 * 22 21 20 36 36 H 1.09002 * 117.49990 * 145.02548 * 22 21 20 37 37 H 1.08993 * 117.50013 * 214.98278 * 23 21 20 38 38 H 1.09000 * 117.50000 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 4.0011 -2.5762 0.0905 11 6 3.8580 -3.2717 -1.1954 12 6 4.1355 -4.7407 -1.0056 13 7 5.3033 -5.3139 -1.1097 14 6 5.1728 -6.6287 -0.8794 15 6 3.8763 -6.8786 -0.6145 16 7 3.2178 -5.6813 -0.6945 17 6 1.7852 -5.4612 -0.4817 18 9 1.2995 -6.4019 0.4329 19 9 1.5812 -4.1723 0.0226 20 6 5.3939 -2.6114 0.5560 21 6 5.4456 -2.2392 2.0392 22 6 6.1881 -0.9570 2.4203 23 6 6.8025 -2.3218 2.7413 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6226 0.8527 26 1 3.8745 -0.7405 -0.9233 27 1 4.5664 -2.8579 -1.9131 28 1 2.8427 -3.1391 -1.5693 29 1 5.9688 -7.3584 -0.8985 30 1 3.4399 -7.8392 -0.3832 31 1 1.2564 -5.5687 -1.4288 32 1 5.7976 -3.6146 0.4188 33 1 5.9870 -1.8995 -0.0182 34 1 4.5614 -2.5006 2.6204 35 1 6.6395 -0.3782 1.6144 36 1 5.7927 -0.3748 3.2526 37 1 6.8108 -2.6370 3.7847 38 1 7.6584 -2.6408 2.1466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:36 Heat of formation + Delta-G solvation = -6.432869 kcal Electronic energy + Delta-G solvation = -23596.860444 eV Core-core repulsion = 19919.256285 eV Total energy + Delta-G solvation = -3677.604159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.20810 -48.32810 -43.05400 -39.28372 -37.00169 -34.55041 -34.45032 -31.68262 -29.88318 -28.20182 -26.91748 -25.38880 -23.24230 -22.78332 -22.45227 -21.39986 -21.00533 -19.25736 -19.03205 -18.78956 -18.04683 -16.96483 -16.67178 -16.17127 -15.80183 -15.75623 -15.31234 -15.14157 -15.02326 -14.92248 -14.71101 -14.43374 -14.30795 -14.10437 -13.55417 -13.40023 -13.09684 -13.03861 -12.53661 -12.41186 -12.26093 -12.14843 -11.77851 -11.34778 -11.16322 -11.12006 -11.01567 -10.72288 -10.65895 -9.46962 -9.04784 -8.17551 -6.17530 0.78478 1.25481 1.36020 1.39247 1.48189 2.04781 2.40304 2.69882 2.90401 3.11957 3.20385 3.22079 3.44648 3.58325 3.69391 3.94977 4.05598 4.17834 4.30648 4.45802 4.49046 4.64664 4.65774 4.74431 4.76159 4.82399 4.97108 5.02910 5.09602 5.20769 5.25305 5.37688 5.65854 5.73677 5.82269 6.09614 6.32119 6.69355 6.98008 7.00915 7.45082 8.97682 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.007332 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.638322 B = 3817.958276 C = 5191.072746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.013 3.987 3 Si 0.927 3.073 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.510 4.510 8 H 0.074 0.926 9 C 0.174 3.826 10 N -0.526 5.526 11 C 0.143 3.857 12 C 0.231 3.769 13 N -0.504 5.504 14 C -0.034 4.034 15 C -0.041 4.041 16 N -0.508 5.508 17 C 0.470 3.530 18 F -0.188 7.188 19 F -0.170 7.170 20 C 0.088 3.912 21 C -0.157 4.157 22 C -0.186 4.186 23 C -0.156 4.156 24 H 0.262 0.738 25 H 0.033 0.967 26 H -0.014 1.014 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.202 0.798 30 H 0.212 0.788 31 H 0.188 0.812 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.584 -12.495 -1.103 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.184 4.184 3 Si 0.752 3.248 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.548 4.548 8 H 0.092 0.908 9 C 0.048 3.952 10 N -0.250 5.250 11 C 0.013 3.987 12 C -0.031 4.031 13 N -0.223 5.223 14 C -0.179 4.179 15 C -0.170 4.170 16 N -0.202 5.202 17 C 0.336 3.664 18 F -0.169 7.169 19 F -0.151 7.151 20 C -0.040 4.040 21 C -0.176 4.176 22 C -0.223 4.223 23 C -0.193 4.193 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.003 0.997 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.219 0.781 30 H 0.229 0.771 31 H 0.205 0.795 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.701 -12.204 -0.883 15.615 hybrid contribution -0.541 1.019 -0.113 1.159 sum 9.160 -11.185 -0.996 14.492 Atomic orbital electron populations 1.70025 1.07725 1.27464 1.53601 1.25636 0.95360 1.02184 0.95174 0.86013 0.79750 0.80181 0.78849 1.19604 1.21374 1.17604 1.21620 0.90729 0.94536 1.47907 0.90798 1.19979 0.94912 0.85377 0.94967 1.61778 1.19384 1.17227 1.26639 1.20298 1.02302 0.84359 0.91722 1.23118 0.83904 0.93112 1.03013 1.70272 1.21949 1.08623 1.21491 1.22888 0.96312 0.92678 1.06069 1.23239 0.93809 0.90413 1.09587 1.46890 1.09118 1.10080 1.54078 1.22221 0.79847 0.72584 0.91771 1.93066 1.87102 1.65581 1.71166 1.93310 1.93956 1.38278 1.89575 1.21690 0.88528 1.00856 0.92932 1.22156 0.96295 1.02982 0.96158 1.23070 1.04511 0.91100 1.03591 1.23001 0.95448 0.99327 1.01555 0.92877 0.94908 0.99684 0.92480 0.89342 0.78129 0.77120 0.79534 0.90073 0.95523 0.89506 0.89032 0.88870 0.87628 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.89 13.96 21.45 0.30 -57.60 16 2 C 0.01 0.76 5.47 84.66 0.46 1.22 16 3 Si 0.93 43.80 27.55 68.60 1.89 45.69 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.25 -11.27 6.43 99.48 0.64 -10.62 16 7 C -0.51 -28.18 9.16 25.60 0.23 -27.95 16 8 H 0.07 4.36 5.27 -2.91 -0.02 4.34 16 9 C 0.17 8.22 3.68 85.55 0.31 8.54 16 10 N -0.53 -21.76 4.08 -905.37 -3.69 -25.45 16 11 C 0.14 5.35 4.28 85.56 0.37 5.71 16 12 C 0.23 7.69 6.50 138.13 0.90 8.59 16 13 N -0.50 -16.13 10.11 -188.13 -1.90 -18.03 16 14 C -0.03 -0.83 11.87 83.52 0.99 0.16 16 15 C -0.04 -0.93 11.16 83.09 0.93 0.00 16 16 N -0.51 -14.49 3.14 -532.45 -1.67 -16.16 16 17 C 0.47 12.79 6.35 127.77 0.81 13.60 16 18 F -0.19 -4.99 17.04 44.97 0.77 -4.22 16 19 F -0.17 -6.66 12.37 44.97 0.56 -6.10 16 20 C 0.09 3.19 5.11 86.30 0.44 3.63 16 21 C -0.16 -5.37 4.96 -10.79 -0.05 -5.43 16 22 C -0.19 -5.55 9.97 30.62 0.31 -5.24 16 23 C -0.16 -4.10 10.25 30.62 0.31 -3.79 16 24 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.03 1.58 5.72 -2.39 -0.01 1.57 16 26 H -0.01 -0.68 7.62 -2.39 -0.02 -0.70 16 27 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 28 H 0.09 3.52 6.23 -2.39 -0.01 3.51 16 29 H 0.20 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.19 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.08 2.94 6.06 -2.39 -0.01 2.92 16 33 H 0.03 0.95 7.79 -2.38 -0.02 0.93 16 34 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -68.71 317.62 3.27 -65.44 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.01 Total: 17.39 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 6.01 Total: -0.95 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -6.96 Total: -117.24 kcal Atomic # 9 Polarization: -11.65 SS G_CDS: 1.32 Total: -10.33 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.89 Total: 45.69 kcal Total: -68.71 3.27 -65.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.009 kcal (2) G-P(sol) polarization free energy of solvation -68.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds