Wall clock time and date at job start Tue Mar 31 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48502 * 109.46735 * 269.99691 * 3 2 1 5 5 H 1.48496 * 109.47287 * 29.99767 * 3 2 1 6 6 H 1.48507 * 109.47080 * 149.99912 * 3 2 1 7 7 C 1.38951 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99507 * 160.89149 * 7 2 1 9 9 N 1.37099 * 120.00534 * 340.89743 * 7 2 1 10 10 C 1.34784 * 119.99244 * 317.56699 * 9 7 2 11 11 O 1.21286 * 120.00209 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99507 * 180.02562 * 10 9 7 13 13 H 1.08998 * 112.51036 * 50.31788 * 12 10 9 14 14 C 1.52876 * 113.16476 * 180.23298 * 12 10 9 15 15 C 1.51427 * 84.73791 * 115.22157 * 14 12 10 16 16 C 1.38948 * 145.53205 * 179.97438 * 15 14 12 17 17 C 1.37969 * 120.32367 * 180.02562 * 16 15 14 18 18 C 1.38245 * 120.17894 * 0.02562 * 17 16 15 19 19 C 1.38168 * 119.74475 * 359.97438 * 18 17 16 20 20 C 1.38238 * 120.12973 * 359.97438 * 19 18 17 21 21 C 1.46490 * 120.00238 * 137.56719 * 9 7 2 22 22 C 1.53869 * 110.03600 * 64.64228 * 21 9 7 23 23 C 1.54261 * 106.64294 * 240.69188 * 22 21 9 24 24 C 1.54968 * 104.15987 * 336.44109 * 23 22 21 25 25 C 1.54264 * 110.03303 * 307.47143 * 21 9 7 26 26 H 0.97003 * 119.99581 * 355.79321 * 1 2 3 27 27 H 1.09010 * 113.98753 * 229.16498 * 14 12 10 28 28 H 1.08995 * 113.99520 * 1.26959 * 14 12 10 29 29 H 1.08003 * 119.83730 * 0.02589 * 16 15 14 30 30 H 1.07996 * 119.91220 * 180.02562 * 17 16 15 31 31 H 1.08002 * 120.12671 * 180.02562 * 18 17 16 32 32 H 1.08002 * 119.93833 * 179.97438 * 19 18 17 33 33 H 1.09010 * 110.05577 * 186.05821 * 21 9 7 34 34 H 1.09005 * 110.03013 * 0.02562 * 22 21 9 35 35 H 1.09007 * 110.03495 * 121.37384 * 22 21 9 36 36 H 1.08997 * 110.48644 * 95.08840 * 23 22 21 37 37 H 1.08999 * 110.49058 * 217.73540 * 23 22 21 38 38 H 1.08997 * 110.72129 * 279.57476 * 24 23 22 39 39 H 1.08995 * 110.92172 * 156.29338 * 24 23 22 40 40 H 1.08997 * 110.48954 * 261.57680 * 25 21 9 41 41 H 1.09002 * 110.48742 * 24.08995 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0442 -1.2293 -0.3057 9 7 1.3800 -2.3579 0.3896 10 6 0.5686 -2.3533 1.4658 11 8 0.3951 -1.3281 2.0903 12 6 -0.1222 -3.6225 1.8939 13 1 0.5658 -4.4634 1.9801 14 6 -1.0074 -3.4390 3.1267 15 6 -2.1464 -3.7727 2.1863 16 6 -3.5198 -3.9468 2.0669 17 6 -4.0763 -4.2811 0.8495 18 6 -3.2701 -4.4460 -0.2614 19 6 -1.9038 -4.2742 -0.1484 20 6 -1.3451 -3.9382 1.0706 21 6 1.5900 -3.5962 -0.3643 22 6 3.0603 -4.0367 -0.2556 23 6 3.6248 -4.0501 -1.6911 24 6 2.3732 -4.2190 -2.5891 25 6 1.3115 -3.3564 -1.8625 26 1 -0.4850 0.8378 0.0616 27 1 -0.8428 -4.1839 3.9053 28 1 -1.0315 -2.4178 3.5070 29 1 -4.1547 -3.8197 2.9313 30 1 -5.1446 -4.4143 0.7641 31 1 -3.7067 -4.7073 -1.2140 32 1 -1.2710 -4.4027 -1.0141 33 1 0.9360 -4.3809 0.0161 34 1 3.6175 -3.3293 0.3586 35 1 3.1199 -5.0348 0.1786 36 1 4.1283 -3.1089 -1.9118 37 1 4.3073 -4.8895 -1.8249 38 1 2.0631 -5.2633 -2.6260 39 1 2.5600 -3.8374 -3.5928 40 1 0.3066 -3.6897 -2.1219 41 1 1.4387 -2.3026 -2.1104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088452257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:59 Heat of formation + Delta-G solvation = 34.944214 kcal Electronic energy + Delta-G solvation = -23412.396224 eV Core-core repulsion = 20258.523089 eV Total energy + Delta-G solvation = -3153.873136 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.38651 -38.37899 -36.70582 -34.67319 -33.17119 -31.48072 -30.34120 -28.05180 -27.17198 -26.83413 -25.58654 -23.57198 -21.58817 -20.42558 -20.04704 -19.58184 -18.62113 -16.84055 -16.15306 -15.90098 -15.13228 -14.90425 -14.61370 -14.21827 -13.99079 -13.65533 -13.19336 -12.94972 -12.76168 -12.62549 -12.23526 -11.90486 -11.58739 -11.33328 -11.25894 -11.04620 -10.85785 -10.73719 -10.59896 -10.49415 -10.43194 -10.38287 -10.16215 -10.06842 -9.88781 -9.73574 -8.73725 -8.49130 -8.31514 -7.75233 -7.02721 -6.02492 -3.78574 1.75716 1.81958 3.33333 3.43172 3.45421 4.04455 4.26902 4.36625 4.77974 4.87450 4.93472 5.19407 5.21836 5.26345 5.33718 5.43130 5.48492 5.51588 5.75166 5.92016 5.94772 5.97183 6.04761 6.12954 6.15906 6.17212 6.25069 6.32451 6.33414 6.44544 6.47293 6.52403 6.63753 6.67788 6.77646 6.81871 6.87088 6.98249 7.23262 7.24824 7.42842 7.69813 8.34149 9.13193 9.23939 9.74119 10.36099 11.03984 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.007721 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.757430 B = 3625.378154 C = 4664.619257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.077 0.923 9 N -0.442 5.442 10 C 0.490 3.510 11 O -0.531 6.531 12 C -0.064 4.064 13 H 0.096 0.904 14 C -0.061 4.061 15 C -0.121 4.121 16 C -0.105 4.105 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.083 4.083 20 C -0.098 4.098 21 C 0.129 3.871 22 C -0.134 4.134 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.124 4.124 26 H 0.262 0.738 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.689 -11.123 -1.009 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.163 5.163 10 C 0.276 3.724 11 O -0.409 6.409 12 C -0.086 4.086 13 H 0.114 0.886 14 C -0.098 4.098 15 C -0.121 4.121 16 C -0.123 4.123 17 C -0.144 4.144 18 C -0.141 4.141 19 C -0.101 4.101 20 C -0.098 4.098 21 C 0.024 3.976 22 C -0.172 4.172 23 C -0.155 4.155 24 C -0.161 4.161 25 C -0.162 4.162 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.960 -10.459 -0.740 10.667 hybrid contribution 0.196 0.795 -0.210 0.845 sum -1.764 -9.665 -0.950 9.870 Atomic orbital electron populations 1.69910 1.06370 1.27369 1.42141 1.25147 0.94654 0.99112 0.94971 0.86396 0.79978 0.83233 0.77501 1.21054 1.21150 1.19763 1.18799 0.94530 0.84494 1.48753 0.90495 1.43308 1.43275 1.07203 1.22508 1.19337 0.83128 0.87917 0.81974 1.90500 1.62772 1.32920 1.54703 1.21419 0.94542 0.99102 0.93519 0.88612 1.21695 0.89465 1.03585 0.95063 1.22416 0.93532 0.98387 0.97755 1.20430 0.93353 1.01080 0.97467 1.20815 0.99154 1.01658 0.92793 1.20887 0.93124 1.01769 0.98320 1.20221 0.94512 0.99449 0.95937 1.21399 0.96931 0.97680 0.93821 1.21687 0.94594 0.88747 0.92556 1.22519 0.97494 1.00240 0.96968 1.22266 0.97031 1.00832 0.95323 1.22462 0.96199 0.99180 0.98281 1.22639 0.96878 1.02129 0.94541 0.92799 0.89505 0.87181 0.87064 0.86419 0.86139 0.86543 0.91447 0.90792 0.92921 0.91649 0.92879 0.92528 0.92328 0.93052 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.48 11.63 55.50 0.65 -23.83 16 2 C 0.07 2.01 4.35 -17.47 -0.08 1.93 16 3 Si 0.90 21.97 29.60 -169.99 -5.03 16.94 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.34 -9.04 7.24 -14.93 -0.11 -9.15 16 8 H 0.08 2.00 7.53 -52.49 -0.40 1.60 16 9 N -0.44 -10.73 2.43 -106.55 -0.26 -10.99 16 10 C 0.49 12.33 6.47 -10.98 -0.07 12.26 16 11 O -0.53 -15.54 13.28 5.55 0.07 -15.47 16 12 C -0.06 -1.28 2.80 -96.58 -0.27 -1.55 16 13 H 0.10 1.67 7.50 -51.93 -0.39 1.28 16 14 C -0.06 -1.11 7.91 -27.59 -0.22 -1.33 16 15 C -0.12 -2.25 7.32 -107.58 -0.79 -3.03 16 16 C -0.11 -1.72 10.05 -39.42 -0.40 -2.12 16 17 C -0.13 -1.90 10.03 -39.68 -0.40 -2.30 16 18 C -0.12 -1.93 10.06 -39.60 -0.40 -2.32 16 19 C -0.08 -1.49 9.96 -39.61 -0.39 -1.89 16 20 C -0.10 -1.91 6.30 -104.55 -0.66 -2.57 16 21 C 0.13 2.52 3.10 -66.82 -0.21 2.31 16 22 C -0.13 -2.27 6.25 -25.62 -0.16 -2.43 16 23 C -0.12 -1.76 6.84 -25.03 -0.17 -1.93 16 24 C -0.12 -1.84 6.91 -24.69 -0.17 -2.01 16 25 C -0.12 -2.31 6.40 -25.07 -0.16 -2.47 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 27 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 28 H 0.11 2.25 7.02 -51.93 -0.36 1.89 16 29 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 1.98 6.76 -52.49 -0.35 1.63 16 33 H 0.07 1.24 5.31 -51.92 -0.28 0.97 16 34 H 0.07 1.40 7.33 -51.93 -0.38 1.02 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.92 6.84 -51.93 -0.36 0.57 16 41 H 0.09 2.05 6.82 -51.93 -0.35 1.70 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -32.20 326.69 -10.10 -42.30 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.81 Total: 4.74 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -4.65 Total: -18.62 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.39 Total: -34.82 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.07 Total: -15.47 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.20 -10.10 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088452257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.246 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds