Wall clock time and date at job start Tue Mar 31 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48502 * 109.46735 * 269.99691 * 3 2 1 5 5 H 1.48496 * 109.47287 * 29.99767 * 3 2 1 6 6 H 1.48507 * 109.47080 * 149.99912 * 3 2 1 7 7 C 1.38951 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99507 * 160.89149 * 7 2 1 9 9 N 1.37099 * 120.00534 * 340.89743 * 7 2 1 10 10 C 1.34784 * 119.99244 * 317.56699 * 9 7 2 11 11 O 1.21286 * 120.00209 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99507 * 180.02562 * 10 9 7 13 13 H 1.08998 * 112.51036 * 50.31788 * 12 10 9 14 14 C 1.52876 * 113.16476 * 180.23298 * 12 10 9 15 15 C 1.51427 * 84.73791 * 115.22157 * 14 12 10 16 16 C 1.38948 * 145.53205 * 179.97438 * 15 14 12 17 17 C 1.37969 * 120.32367 * 180.02562 * 16 15 14 18 18 C 1.38245 * 120.17894 * 0.02562 * 17 16 15 19 19 C 1.38168 * 119.74475 * 359.97438 * 18 17 16 20 20 C 1.38238 * 120.12973 * 359.97438 * 19 18 17 21 21 C 1.46490 * 120.00238 * 137.56719 * 9 7 2 22 22 C 1.53869 * 110.03600 * 64.64228 * 21 9 7 23 23 C 1.54261 * 106.64294 * 240.69188 * 22 21 9 24 24 C 1.54968 * 104.15987 * 336.44109 * 23 22 21 25 25 C 1.54264 * 110.03303 * 307.47143 * 21 9 7 26 26 H 0.97003 * 119.99581 * 355.79321 * 1 2 3 27 27 H 1.09010 * 113.98753 * 229.16498 * 14 12 10 28 28 H 1.08995 * 113.99520 * 1.26959 * 14 12 10 29 29 H 1.08003 * 119.83730 * 0.02589 * 16 15 14 30 30 H 1.07996 * 119.91220 * 180.02562 * 17 16 15 31 31 H 1.08002 * 120.12671 * 180.02562 * 18 17 16 32 32 H 1.08002 * 119.93833 * 179.97438 * 19 18 17 33 33 H 1.09010 * 110.05577 * 186.05821 * 21 9 7 34 34 H 1.09005 * 110.03013 * 0.02562 * 22 21 9 35 35 H 1.09007 * 110.03495 * 121.37384 * 22 21 9 36 36 H 1.08997 * 110.48644 * 95.08840 * 23 22 21 37 37 H 1.08999 * 110.49058 * 217.73540 * 23 22 21 38 38 H 1.08997 * 110.72129 * 279.57476 * 24 23 22 39 39 H 1.08995 * 110.92172 * 156.29338 * 24 23 22 40 40 H 1.08997 * 110.48954 * 261.57680 * 25 21 9 41 41 H 1.09002 * 110.48742 * 24.08995 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0442 -1.2293 -0.3057 9 7 1.3800 -2.3579 0.3896 10 6 0.5686 -2.3533 1.4658 11 8 0.3951 -1.3281 2.0903 12 6 -0.1222 -3.6225 1.8939 13 1 0.5658 -4.4634 1.9801 14 6 -1.0074 -3.4390 3.1267 15 6 -2.1464 -3.7727 2.1863 16 6 -3.5198 -3.9468 2.0669 17 6 -4.0763 -4.2811 0.8495 18 6 -3.2701 -4.4460 -0.2614 19 6 -1.9038 -4.2742 -0.1484 20 6 -1.3451 -3.9382 1.0706 21 6 1.5900 -3.5962 -0.3643 22 6 3.0603 -4.0367 -0.2556 23 6 3.6248 -4.0501 -1.6911 24 6 2.3732 -4.2190 -2.5891 25 6 1.3115 -3.3564 -1.8625 26 1 -0.4850 0.8378 0.0616 27 1 -0.8428 -4.1839 3.9053 28 1 -1.0315 -2.4178 3.5070 29 1 -4.1547 -3.8197 2.9313 30 1 -5.1446 -4.4143 0.7641 31 1 -3.7067 -4.7073 -1.2140 32 1 -1.2710 -4.4027 -1.0141 33 1 0.9360 -4.3809 0.0161 34 1 3.6175 -3.3293 0.3586 35 1 3.1199 -5.0348 0.1786 36 1 4.1283 -3.1089 -1.9118 37 1 4.3073 -4.8895 -1.8249 38 1 2.0631 -5.2633 -2.6260 39 1 2.5600 -3.8374 -3.5928 40 1 0.3066 -3.6897 -2.1219 41 1 1.4387 -2.3026 -2.1104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088452257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:58 Heat of formation + Delta-G solvation = 17.904583 kcal Electronic energy + Delta-G solvation = -23413.135118 eV Core-core repulsion = 20258.523089 eV Total energy + Delta-G solvation = -3154.612030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86956 -39.97171 -38.32433 -36.12658 -35.05068 -33.43257 -31.65406 -29.43694 -28.67953 -28.37476 -27.24561 -25.27375 -23.04517 -21.87862 -21.37341 -21.09562 -20.35033 -18.50812 -17.74954 -17.43095 -16.87622 -16.42274 -16.13168 -15.76713 -15.60766 -15.23904 -14.79520 -14.58810 -14.13339 -13.86941 -13.76248 -13.44822 -13.24261 -12.96687 -12.82698 -12.78416 -12.56547 -12.44782 -12.30108 -12.09998 -11.85710 -11.80990 -11.74421 -11.36017 -11.30952 -11.26619 -10.71373 -10.19923 -9.66416 -9.35492 -9.01327 -8.13820 -5.91194 0.44886 0.51063 1.35111 1.41552 1.48996 2.27077 2.43330 2.89000 3.12655 3.26140 3.38750 3.55993 3.74114 3.88401 3.95023 4.05755 4.23052 4.25031 4.34083 4.42534 4.60624 4.66534 4.69213 4.78213 4.82588 4.86717 4.87405 4.95487 5.01563 5.10414 5.16158 5.18778 5.25108 5.30222 5.45332 5.51957 5.55065 5.58852 5.61120 5.69522 5.89588 6.14848 6.26100 7.08790 7.26672 7.76527 8.40984 8.91768 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.007721 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.757430 B = 3625.378154 C = 4664.619257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.021 3.979 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.452 5.452 10 C 0.476 3.524 11 O -0.586 6.586 12 C -0.062 4.062 13 H 0.119 0.881 14 C -0.056 4.056 15 C -0.141 4.141 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.123 4.123 19 C -0.101 4.101 20 C -0.128 4.128 21 C 0.123 3.877 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.111 4.111 25 C -0.124 4.124 26 H 0.252 0.748 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -13.721 -1.922 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.172 5.172 10 C 0.264 3.736 11 O -0.468 6.468 12 C -0.083 4.083 13 H 0.137 0.863 14 C -0.093 4.093 15 C -0.141 4.141 16 C -0.130 4.130 17 C -0.138 4.138 18 C -0.140 4.140 19 C -0.119 4.119 20 C -0.128 4.128 21 C 0.019 3.981 22 C -0.169 4.169 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.162 4.162 26 H 0.062 0.938 27 H 0.142 0.858 28 H 0.097 0.903 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.170 0.830 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.246 -13.091 -1.688 13.389 hybrid contribution 0.265 1.523 0.058 1.547 sum -1.981 -11.568 -1.630 11.849 Atomic orbital electron populations 1.70037 1.07774 1.27173 1.44860 1.25904 0.95259 1.02160 0.95137 0.85536 0.78650 0.79533 0.78081 1.19342 1.22336 1.19246 1.19008 0.94633 0.85712 1.47361 0.90437 1.43556 1.42698 1.08091 1.22894 1.20226 0.82719 0.89092 0.81517 1.90452 1.64489 1.35401 1.56424 1.21342 0.95132 0.97002 0.94826 0.86279 1.21641 0.89325 1.02874 0.95425 1.22554 0.94702 0.99441 0.97397 1.20827 0.92704 1.00349 0.99145 1.21308 1.01075 0.99585 0.91827 1.21320 0.92190 1.00467 1.00062 1.20476 0.95898 1.00094 0.95447 1.21448 0.96592 0.99792 0.95003 1.21966 0.96706 0.86950 0.92457 1.22487 0.95144 1.00980 0.98269 1.22261 0.97536 1.01524 0.93712 1.22427 0.94336 0.99877 0.98185 1.22562 0.98590 1.00365 0.94664 0.93833 0.85803 0.90319 0.84639 0.82593 0.82974 0.86439 0.90195 0.93381 0.89921 0.93195 0.89479 0.89704 0.91188 0.92857 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -53.76 11.63 21.66 0.25 -53.51 16 2 C 0.02 1.24 4.35 84.93 0.37 1.61 16 3 Si 0.96 46.75 29.60 68.60 2.03 48.78 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.34 -18.77 7.24 84.04 0.61 -18.16 16 8 H 0.08 4.16 7.53 -2.91 -0.02 4.14 16 9 N -0.45 -22.61 2.43 -609.39 -1.48 -24.09 16 10 C 0.48 24.83 6.47 87.66 0.57 25.40 16 11 O -0.59 -36.13 13.28 -3.05 -0.04 -36.17 16 12 C -0.06 -2.49 2.80 -14.66 -0.04 -2.53 16 13 H 0.12 4.07 7.50 -2.39 -0.02 4.05 16 14 C -0.06 -2.04 7.91 30.04 0.24 -1.81 16 15 C -0.14 -5.15 7.32 -21.78 -0.16 -5.31 16 16 C -0.11 -3.44 10.05 22.38 0.22 -3.22 16 17 C -0.12 -3.24 10.03 22.21 0.22 -3.01 16 18 C -0.12 -3.52 10.06 22.25 0.22 -3.30 16 19 C -0.10 -3.53 9.96 22.25 0.22 -3.31 16 20 C -0.13 -4.96 6.30 -19.82 -0.12 -5.09 16 21 C 0.12 4.76 3.10 45.71 0.14 4.90 16 22 C -0.13 -4.24 6.25 31.31 0.20 -4.04 16 23 C -0.11 -3.12 6.84 31.69 0.22 -2.90 16 24 C -0.11 -3.00 6.91 31.92 0.22 -2.78 16 25 C -0.12 -4.58 6.40 31.67 0.20 -4.38 16 26 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 27 H 0.12 3.45 8.14 -2.38 -0.02 3.43 16 28 H 0.08 3.39 7.02 -2.39 -0.02 3.37 16 29 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.12 3.93 6.76 -2.91 -0.02 3.91 16 33 H 0.08 2.87 5.31 -2.38 -0.01 2.86 16 34 H 0.05 1.81 7.33 -2.38 -0.02 1.79 16 35 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.90 6.84 -2.39 -0.02 1.88 16 41 H 0.05 2.28 6.82 -2.39 -0.02 2.26 16 Total: -1.00 -74.66 326.69 5.11 -69.55 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 1.02 Total: 23.37 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.33 Total: -27.92 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.23 Total: -77.60 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.04 Total: -36.17 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -74.66 5.11 -69.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088452257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.451 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds