Wall clock time and date at job start Tue Mar 31 2020 06:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86798 * 120.00016 * 2 1 4 4 H 1.48501 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47218 * 300.00181 * 3 2 1 6 6 H 1.48500 * 109.47322 * 59.99892 * 3 2 1 7 7 C 1.38958 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99734 * 200.86255 * 7 2 1 9 9 N 1.37091 * 119.99844 * 20.85879 * 7 2 1 10 10 C 1.34778 * 120.00298 * 55.00016 * 9 7 2 11 11 O 1.21288 * 119.99815 * 179.97438 * 10 9 7 12 12 C 1.50702 * 119.99662 * 0.02562 * 10 9 7 13 13 H 1.08999 * 113.12472 * 312.37095 * 12 10 9 14 14 C 1.52881 * 113.98517 * 179.97438 * 12 10 9 15 15 C 1.50764 * 89.76448 * 245.90129 * 14 12 10 16 16 C 1.38235 * 149.34038 * 179.97438 * 15 14 12 17 17 C 1.38183 * 120.12535 * 180.02562 * 16 15 14 18 18 C 1.38236 * 119.74545 * 0.02562 * 17 16 15 19 19 C 1.37977 * 120.17835 * 359.97438 * 18 17 16 20 20 C 1.38357 * 90.24756 * 0.20667 * 15 14 12 21 21 C 1.46502 * 119.99678 * 235.00443 * 9 7 2 22 22 C 1.54263 * 110.03744 * 58.36050 * 21 9 7 23 23 C 1.54885 * 104.19879 * 217.10674 * 22 21 9 24 24 C 1.54884 * 102.74954 * 37.93604 * 23 22 21 25 25 C 1.53876 * 110.03336 * 301.19078 * 21 9 7 26 26 H 0.97003 * 120.00435 * 354.78399 * 1 2 3 27 27 H 1.08999 * 113.16375 * 130.68124 * 14 12 10 28 28 H 1.08999 * 113.22322 * 1.13188 * 14 12 10 29 29 H 1.07997 * 119.93939 * 359.97438 * 16 15 14 30 30 H 1.07988 * 120.12870 * 180.02562 * 17 16 15 31 31 H 1.08003 * 119.91225 * 179.97438 * 18 17 16 32 32 H 1.08006 * 119.83525 * 180.02562 * 19 18 17 33 33 H 1.09009 * 110.01519 * 179.80401 * 21 9 7 34 34 H 1.09004 * 110.48383 * 335.78809 * 22 21 9 35 35 H 1.08999 * 110.48659 * 98.41990 * 22 21 9 36 36 H 1.09008 * 110.75397 * 279.62349 * 23 22 21 37 37 H 1.08997 * 110.75797 * 156.25785 * 23 22 21 38 38 H 1.08998 * 110.48948 * 203.38095 * 24 23 22 39 39 H 1.09002 * 110.48441 * 80.73787 * 24 23 22 40 40 H 1.08998 * 110.03197 * 238.57403 * 25 21 9 41 41 H 1.09004 * 110.03013 * 359.95094 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0357 -1.2341 0.3325 9 7 1.3908 -2.3515 -0.4238 10 6 0.8210 -2.3996 -1.6443 11 8 0.2746 -3.4156 -2.0188 12 6 0.8638 -1.1913 -2.5439 13 1 0.5778 -0.2698 -2.0369 14 6 0.1773 -1.3972 -3.8942 15 6 1.5101 -1.2609 -4.5856 16 6 2.2473 -1.2485 -5.7549 17 6 3.6140 -1.0491 -5.7110 18 6 4.2411 -0.8627 -4.4933 19 6 3.5062 -0.8750 -3.3256 20 6 2.1324 -1.0795 -3.3633 21 6 1.3496 -3.5263 0.4506 22 6 0.6533 -3.1711 1.7806 23 6 1.4422 -3.9698 2.8476 24 6 2.9024 -3.8660 2.3419 25 6 2.7797 -3.9682 0.8075 26 1 -0.4851 0.8366 0.0764 27 1 -0.5204 -0.5987 -4.1467 28 1 -0.2641 -2.3876 -4.0054 29 1 1.7544 -1.3956 -6.7045 30 1 4.1899 -1.0389 -6.6244 31 1 5.3092 -0.7070 -4.4558 32 1 4.0018 -0.7283 -2.3772 33 1 0.8195 -4.3407 -0.0434 34 1 0.7251 -2.1009 1.9748 35 1 -0.3898 -3.4870 1.7613 36 1 1.1148 -5.0093 2.8721 37 1 1.3397 -3.5082 3.8297 38 1 3.5008 -4.6891 2.7323 39 1 3.3376 -2.9081 2.6268 40 1 2.9433 -4.9972 0.4875 41 1 3.5044 -3.3091 0.3294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088452258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:02 Heat of formation + Delta-G solvation = 25.434877 kcal Electronic energy + Delta-G solvation = -23320.301672 eV Core-core repulsion = 20166.016181 eV Total energy + Delta-G solvation = -3154.285492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.23770 -38.53800 -36.65360 -34.46518 -34.14940 -31.46637 -30.24739 -27.94287 -27.50313 -26.68062 -24.96033 -23.98436 -21.54167 -20.35115 -19.98303 -19.33578 -18.84053 -16.84103 -16.17293 -15.76249 -15.18923 -14.80700 -14.52597 -14.51462 -14.09459 -13.87764 -13.20458 -12.92198 -12.63971 -12.49927 -12.33005 -11.94535 -11.61615 -11.52100 -11.39290 -11.15017 -10.85575 -10.76814 -10.61876 -10.48227 -10.38931 -10.34446 -10.20872 -9.97007 -9.81822 -9.63483 -8.81808 -8.72094 -8.27275 -7.80388 -7.28134 -6.45536 -4.25321 1.83328 1.89591 3.06494 3.19140 3.20286 3.89848 4.07247 4.27174 4.71422 4.82324 4.86699 5.18034 5.37200 5.37707 5.40222 5.44935 5.55767 5.63991 6.05741 6.07389 6.09406 6.21501 6.23560 6.26582 6.31240 6.34577 6.39152 6.47145 6.51917 6.55528 6.63590 6.65543 6.74322 6.84957 6.91986 6.96172 7.03641 7.12115 7.32177 7.37825 7.43383 7.54085 8.00968 8.59948 8.88953 9.55917 9.99447 10.58420 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.007165 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.825333 B = 3907.179641 C = 4454.670078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.332 4.332 8 H 0.082 0.918 9 N -0.441 5.441 10 C 0.534 3.466 11 O -0.606 6.606 12 C -0.053 4.053 13 H 0.140 0.860 14 C -0.064 4.064 15 C -0.135 4.135 16 C -0.099 4.099 17 C -0.130 4.130 18 C -0.128 4.128 19 C -0.094 4.094 20 C -0.082 4.082 21 C 0.132 3.868 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.127 4.127 26 H 0.272 0.728 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -0.549 -2.414 5.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.151 4.151 3 Si 0.720 3.280 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.460 4.460 8 H 0.099 0.901 9 N -0.159 5.159 10 C 0.324 3.676 11 O -0.492 6.492 12 C -0.074 4.074 13 H 0.157 0.843 14 C -0.102 4.102 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.112 4.112 20 C -0.083 4.083 21 C 0.028 3.972 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.153 4.153 25 C -0.165 4.165 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.545 -0.929 -2.629 5.332 hybrid contribution 0.456 1.083 0.173 1.188 sum 5.001 0.154 -2.456 5.574 Atomic orbital electron populations 1.69983 1.06063 1.28057 1.44969 1.25538 0.95042 0.99820 0.94738 0.86375 0.80771 0.82559 0.78313 1.18788 1.20030 1.20572 1.19074 0.96126 0.83756 1.47079 0.90081 1.43299 1.50791 1.11039 1.10819 1.19638 0.79248 0.86936 0.81826 1.90483 1.49489 1.33549 1.75653 1.21498 0.90541 1.01495 0.93820 0.84309 1.21581 0.93108 1.03395 0.92067 1.21964 0.98449 0.99128 0.93931 1.20058 0.93269 1.02011 0.96402 1.20851 0.94066 1.02339 0.97536 1.20867 0.99236 1.02141 0.92380 1.20699 0.92972 0.99194 0.98320 1.22162 0.93524 0.96937 0.95644 1.21594 0.94294 0.90058 0.91210 1.22571 0.97416 1.02213 0.93585 1.22445 0.95812 0.99428 0.98413 1.22249 0.96521 1.00760 0.95810 1.22395 0.98535 1.00011 0.95568 0.91806 0.90140 0.88328 0.87016 0.86357 0.86428 0.86117 0.90529 0.88991 0.93136 0.92589 0.92441 0.93023 0.91674 0.93029 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.42 11.86 55.50 0.66 -20.76 16 2 C 0.06 1.31 3.33 -17.47 -0.06 1.25 16 3 Si 0.89 18.78 29.61 -169.99 -5.03 13.75 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.33 -7.91 6.89 -14.93 -0.10 -8.01 16 8 H 0.08 1.91 7.22 -52.49 -0.38 1.54 16 9 N -0.44 -10.66 2.34 -106.54 -0.25 -10.91 16 10 C 0.53 13.60 6.74 -10.98 -0.07 13.53 16 11 O -0.61 -16.63 15.07 5.55 0.08 -16.55 16 12 C -0.05 -1.22 3.12 -92.62 -0.29 -1.51 16 13 H 0.14 3.38 4.80 -51.93 -0.25 3.13 16 14 C -0.06 -1.31 7.54 -31.55 -0.24 -1.55 16 15 C -0.13 -2.64 7.60 -104.55 -0.79 -3.43 16 16 C -0.10 -1.66 10.04 -39.60 -0.40 -2.05 16 17 C -0.13 -1.98 10.06 -39.60 -0.40 -2.38 16 18 C -0.13 -2.08 10.03 -39.68 -0.40 -2.47 16 19 C -0.09 -1.81 10.05 -39.41 -0.40 -2.20 16 20 C -0.08 -1.75 6.83 -107.59 -0.73 -2.48 16 21 C 0.13 2.90 3.30 -66.81 -0.22 2.68 16 22 C -0.12 -2.43 6.41 -25.08 -0.16 -2.59 16 23 C -0.12 -2.01 6.91 -24.74 -0.17 -2.18 16 24 C -0.12 -1.87 6.83 -25.08 -0.17 -2.04 16 25 C -0.13 -2.37 6.26 -25.61 -0.16 -2.53 16 26 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.10 2.09 7.04 -51.93 -0.37 1.72 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 33 H 0.08 1.79 6.94 -51.92 -0.36 1.43 16 34 H 0.09 2.11 7.05 -51.93 -0.37 1.74 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.40 6.90 -51.93 -0.36 1.04 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -27.48 329.60 -10.20 -37.68 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.86 Total: 9.80 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.76 Total: -17.98 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.41 Total: -31.67 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.08 Total: -16.55 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.48 -10.20 -37.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088452258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.115 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds