Wall clock time and date at job start Tue Mar 31 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86798 * 120.00016 * 2 1 4 4 H 1.48501 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47218 * 300.00181 * 3 2 1 6 6 H 1.48500 * 109.47322 * 59.99892 * 3 2 1 7 7 C 1.38958 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99734 * 200.86255 * 7 2 1 9 9 N 1.37091 * 119.99844 * 20.85879 * 7 2 1 10 10 C 1.34778 * 120.00298 * 55.00016 * 9 7 2 11 11 O 1.21288 * 119.99815 * 179.97438 * 10 9 7 12 12 C 1.50702 * 119.99662 * 0.02562 * 10 9 7 13 13 H 1.08999 * 113.12472 * 312.37095 * 12 10 9 14 14 C 1.52881 * 113.98517 * 179.97438 * 12 10 9 15 15 C 1.50764 * 89.76448 * 245.90129 * 14 12 10 16 16 C 1.38235 * 149.34038 * 179.97438 * 15 14 12 17 17 C 1.38183 * 120.12535 * 180.02562 * 16 15 14 18 18 C 1.38236 * 119.74545 * 0.02562 * 17 16 15 19 19 C 1.37977 * 120.17835 * 359.97438 * 18 17 16 20 20 C 1.38357 * 90.24756 * 0.20667 * 15 14 12 21 21 C 1.46502 * 119.99678 * 235.00443 * 9 7 2 22 22 C 1.54263 * 110.03744 * 58.36050 * 21 9 7 23 23 C 1.54885 * 104.19879 * 217.10674 * 22 21 9 24 24 C 1.54884 * 102.74954 * 37.93604 * 23 22 21 25 25 C 1.53876 * 110.03336 * 301.19078 * 21 9 7 26 26 H 0.97003 * 120.00435 * 354.78399 * 1 2 3 27 27 H 1.08999 * 113.16375 * 130.68124 * 14 12 10 28 28 H 1.08999 * 113.22322 * 1.13188 * 14 12 10 29 29 H 1.07997 * 119.93939 * 359.97438 * 16 15 14 30 30 H 1.07988 * 120.12870 * 180.02562 * 17 16 15 31 31 H 1.08003 * 119.91225 * 179.97438 * 18 17 16 32 32 H 1.08006 * 119.83525 * 180.02562 * 19 18 17 33 33 H 1.09009 * 110.01519 * 179.80401 * 21 9 7 34 34 H 1.09004 * 110.48383 * 335.78809 * 22 21 9 35 35 H 1.08999 * 110.48659 * 98.41990 * 22 21 9 36 36 H 1.09008 * 110.75397 * 279.62349 * 23 22 21 37 37 H 1.08997 * 110.75797 * 156.25785 * 23 22 21 38 38 H 1.08998 * 110.48948 * 203.38095 * 24 23 22 39 39 H 1.09002 * 110.48441 * 80.73787 * 24 23 22 40 40 H 1.08998 * 110.03197 * 238.57403 * 25 21 9 41 41 H 1.09004 * 110.03013 * 359.95094 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0357 -1.2341 0.3325 9 7 1.3908 -2.3515 -0.4238 10 6 0.8210 -2.3996 -1.6443 11 8 0.2746 -3.4156 -2.0188 12 6 0.8638 -1.1913 -2.5439 13 1 0.5778 -0.2698 -2.0369 14 6 0.1773 -1.3972 -3.8942 15 6 1.5101 -1.2609 -4.5856 16 6 2.2473 -1.2485 -5.7549 17 6 3.6140 -1.0491 -5.7110 18 6 4.2411 -0.8627 -4.4933 19 6 3.5062 -0.8750 -3.3256 20 6 2.1324 -1.0795 -3.3633 21 6 1.3496 -3.5263 0.4506 22 6 0.6533 -3.1711 1.7806 23 6 1.4422 -3.9698 2.8476 24 6 2.9024 -3.8660 2.3419 25 6 2.7797 -3.9682 0.8075 26 1 -0.4851 0.8366 0.0764 27 1 -0.5204 -0.5987 -4.1467 28 1 -0.2641 -2.3876 -4.0054 29 1 1.7544 -1.3956 -6.7045 30 1 4.1899 -1.0389 -6.6244 31 1 5.3092 -0.7070 -4.4558 32 1 4.0018 -0.7283 -2.3772 33 1 0.8195 -4.3407 -0.0434 34 1 0.7251 -2.1009 1.9748 35 1 -0.3898 -3.4870 1.7613 36 1 1.1148 -5.0093 2.8721 37 1 1.3397 -3.5082 3.8297 38 1 3.5008 -4.6891 2.7323 39 1 3.3376 -2.9081 2.6268 40 1 2.9433 -4.9972 0.4875 41 1 3.5044 -3.3091 0.3294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088452258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:00 Heat of formation + Delta-G solvation = 13.269535 kcal Electronic energy + Delta-G solvation = -23320.829201 eV Core-core repulsion = 20166.016181 eV Total energy + Delta-G solvation = -3154.813020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.83774 -40.20991 -38.32105 -36.10510 -35.85176 -33.32376 -31.61593 -29.47911 -29.10196 -28.19000 -26.80280 -25.60728 -23.03338 -21.86633 -21.42182 -21.11009 -20.45568 -18.64388 -17.69307 -17.45843 -16.98372 -16.36428 -16.20511 -15.98999 -15.70838 -15.35187 -14.92911 -14.57398 -14.16347 -13.91429 -13.80713 -13.49180 -13.35895 -13.14369 -12.95565 -12.94227 -12.52658 -12.39948 -12.27325 -12.07747 -11.89202 -11.82573 -11.75392 -11.40698 -11.34339 -11.28157 -10.66470 -10.49521 -9.66678 -9.35073 -9.18253 -8.32504 -6.17368 0.45042 0.51985 1.35679 1.44611 1.52553 2.02762 2.29223 2.84093 2.96489 3.04236 3.35742 3.68356 3.83313 3.85912 3.92139 4.15351 4.25876 4.30423 4.39220 4.58805 4.66676 4.68584 4.77835 4.78680 4.80762 4.83648 4.90736 4.92081 5.01922 5.06710 5.15389 5.21814 5.23787 5.29188 5.41893 5.49044 5.53919 5.55337 5.62718 5.64643 5.94819 6.14351 6.16683 6.68334 7.00710 7.63177 8.09209 8.72885 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.007165 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.825333 B = 3907.179641 C = 4454.670078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.029 3.971 3 Si 0.947 3.053 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.335 4.335 8 H 0.083 0.917 9 N -0.443 5.443 10 C 0.515 3.485 11 O -0.642 6.642 12 C -0.063 4.063 13 H 0.121 0.879 14 C -0.061 4.061 15 C -0.147 4.147 16 C -0.099 4.099 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.113 4.113 20 C -0.118 4.118 21 C 0.118 3.882 22 C -0.116 4.116 23 C -0.111 4.111 24 C -0.107 4.107 25 C -0.120 4.120 26 H 0.273 0.727 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.143 0.857 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.587 -0.239 -3.172 8.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.176 4.176 3 Si 0.771 3.229 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.463 4.463 8 H 0.100 0.900 9 N -0.160 5.160 10 C 0.306 3.694 11 O -0.531 6.531 12 C -0.084 4.084 13 H 0.138 0.862 14 C -0.098 4.098 15 C -0.147 4.147 16 C -0.117 4.117 17 C -0.133 4.133 18 C -0.139 4.139 19 C -0.131 4.131 20 C -0.119 4.119 21 C 0.015 3.985 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.159 4.159 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.161 0.839 30 H 0.182 0.818 31 H 0.171 0.829 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.204 -0.619 -3.358 7.972 hybrid contribution -0.355 0.955 0.355 1.079 sum 6.849 0.336 -3.003 7.486 Atomic orbital electron populations 1.70065 1.07483 1.28740 1.45793 1.26078 0.95396 1.02112 0.93993 0.85556 0.80272 0.79132 0.77927 1.17615 1.20508 1.20249 1.19158 0.96123 0.83977 1.47024 0.89972 1.43499 1.49988 1.11765 1.10766 1.20226 0.79217 0.87479 0.82511 1.90427 1.51213 1.35002 1.76442 1.21350 0.93330 0.99385 0.94287 0.86215 1.21461 0.94164 1.02924 0.91285 1.21971 0.97365 1.00617 0.94765 1.20511 0.94049 1.00640 0.96480 1.21404 0.93567 0.99427 0.98901 1.21299 1.00846 1.00286 0.91511 1.20872 0.92345 1.00303 0.99585 1.22079 0.94152 0.99952 0.95719 1.21838 0.96574 0.88789 0.91318 1.22462 0.97406 1.01050 0.94479 1.22412 0.94977 0.99842 0.97651 1.22221 0.96796 1.02019 0.93383 1.22329 0.95556 1.00207 0.97777 0.91749 0.88600 0.90073 0.83940 0.81756 0.82856 0.86894 0.93014 0.91835 0.94366 0.90706 0.90533 0.89600 0.91996 0.91692 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.20 11.86 21.67 0.26 -45.94 16 2 C 0.03 1.39 3.33 84.93 0.28 1.68 16 3 Si 0.95 38.96 29.61 68.60 2.03 40.99 16 4 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.34 -16.48 6.89 84.04 0.58 -15.90 16 8 H 0.08 3.96 7.22 -2.91 -0.02 3.94 16 9 N -0.44 -22.47 2.34 -609.37 -1.42 -23.90 16 10 C 0.52 27.81 6.74 87.66 0.59 28.40 16 11 O -0.64 -37.57 15.07 -3.06 -0.05 -37.62 16 12 C -0.06 -3.04 3.12 -12.09 -0.04 -3.08 16 13 H 0.12 6.16 4.80 -2.39 -0.01 6.15 16 14 C -0.06 -2.60 7.54 27.47 0.21 -2.39 16 15 C -0.15 -5.73 7.60 -19.82 -0.15 -5.88 16 16 C -0.10 -3.02 10.04 22.26 0.22 -2.79 16 17 C -0.12 -3.01 10.06 22.26 0.22 -2.78 16 18 C -0.12 -3.53 10.03 22.21 0.22 -3.31 16 19 C -0.11 -4.27 10.05 22.38 0.22 -4.05 16 20 C -0.12 -5.12 6.83 -21.79 -0.15 -5.27 16 21 C 0.12 5.39 3.30 45.71 0.15 5.54 16 22 C -0.12 -4.83 6.41 31.67 0.20 -4.63 16 23 C -0.11 -3.44 6.91 31.88 0.22 -3.22 16 24 C -0.11 -3.22 6.83 31.67 0.22 -3.01 16 25 C -0.12 -4.48 6.26 31.32 0.20 -4.28 16 26 H 0.27 13.50 8.32 -92.71 -0.77 12.73 16 27 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 28 H 0.08 3.66 7.04 -2.39 -0.02 3.64 16 29 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 30 H 0.16 2.83 8.06 -2.92 -0.02 2.81 16 31 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.05 2.57 6.94 -2.38 -0.02 2.55 16 34 H 0.06 3.02 7.05 -2.39 -0.02 3.00 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.06 2.25 6.90 -2.39 -0.02 2.23 16 Total: -1.00 -63.58 329.60 5.04 -58.54 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 1.02 Total: 32.91 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 3.20 Total: -24.98 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -1.17 Total: -69.84 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.05 Total: -37.62 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -63.58 5.04 -58.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088452258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.805 kcal (2) G-P(sol) polarization free energy of solvation -63.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds