Wall clock time and date at job start Tue Mar 31 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30859 * 125.89327 * 2 1 4 4 N 1.40086 * 108.22479 * 179.76963 * 3 2 1 5 5 C 1.46495 * 126.03566 * 180.30521 * 4 3 2 6 6 C 1.35039 * 107.92368 * 0.41797 * 4 3 2 7 7 C 1.50703 * 126.13418 * 179.84940 * 6 4 3 8 8 N 1.46896 * 109.47183 * 97.13443 * 7 6 4 9 9 C 1.46901 * 111.00405 * 159.70830 * 8 7 6 10 10 C 1.50701 * 109.47350 * 202.12355 * 9 8 7 11 11 H 1.08000 * 119.99710 * 4.64579 * 10 9 8 12 12 C 1.37877 * 120.00037 * 184.64193 * 10 9 8 13 13 N 1.31517 * 120.00153 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00050 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46815 * 89.99556 * 14 12 10 16 16 H 1.48489 * 109.47201 * 209.99841 * 14 12 10 17 17 H 1.48496 * 109.46766 * 330.00120 * 14 12 10 18 18 C 1.46907 * 110.99884 * 283.65945 * 8 7 6 19 19 C 1.53004 * 109.47058 * 169.64054 * 18 8 7 20 20 C 1.52999 * 109.46876 * 289.63589 * 18 8 7 21 21 C 1.35376 * 107.73009 * 359.58804 * 6 4 3 22 22 Cl 1.73600 * 126.04588 * 180.29829 * 21 6 4 23 23 H 1.08998 * 109.47364 * 269.97433 * 1 2 3 24 24 H 1.09004 * 109.47622 * 29.97554 * 1 2 3 25 25 H 1.08999 * 109.47410 * 149.97424 * 1 2 3 26 26 H 1.09001 * 109.47076 * 275.39146 * 5 4 3 27 27 H 1.08996 * 109.47371 * 35.38967 * 5 4 3 28 28 H 1.09004 * 109.47246 * 155.38923 * 5 4 3 29 29 H 1.08995 * 109.47103 * 337.13310 * 7 6 4 30 30 H 1.09005 * 109.47288 * 217.12979 * 7 6 4 31 31 H 1.09001 * 109.46633 * 322.12170 * 9 8 7 32 32 H 1.08992 * 109.47318 * 82.12098 * 9 8 7 33 33 H 0.96993 * 120.00160 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.46887 * 49.63824 * 18 8 7 35 35 H 1.08998 * 109.47110 * 68.92558 * 19 18 8 36 36 H 1.08999 * 109.46693 * 188.92489 * 19 18 8 37 37 H 1.08999 * 109.46886 * 308.92383 * 19 18 8 38 38 H 1.08999 * 109.47083 * 51.86982 * 20 18 8 39 39 H 1.09004 * 109.47031 * 171.86266 * 20 18 8 40 40 H 1.08997 * 109.47213 * 291.86674 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6089 0.6349 0.0053 5 6 4.7896 1.5021 0.0135 6 6 3.6149 -0.7154 -0.0008 7 6 4.8360 -1.5986 -0.0014 8 7 5.1281 -2.0313 1.3717 9 6 5.9714 -3.2341 1.3766 10 6 5.8119 -3.9541 2.6909 11 1 5.0950 -3.6002 3.4169 12 6 6.5812 -5.0646 2.9663 13 7 6.4417 -5.6933 4.1131 14 14 7.8217 -5.6764 1.7107 15 1 9.1313 -5.0176 1.9474 16 1 7.9762 -7.1472 1.8436 17 1 7.3436 -5.3504 0.3432 18 6 5.7517 -0.9480 2.1436 19 6 5.8046 -1.3400 3.6216 20 6 7.1722 -0.7073 1.6286 21 6 2.3273 -1.1335 -0.0005 22 17 1.7892 -2.7840 0.0002 23 1 -0.3634 -0.0005 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 5.0302 1.7978 -1.0077 27 1 4.5836 2.3908 0.6100 28 1 5.6334 0.9630 0.4441 29 1 5.6865 -1.0425 -0.3958 30 1 4.6520 -2.4726 -0.6263 31 1 5.6694 -3.8929 0.5624 32 1 7.0144 -2.9471 1.2439 33 1 6.9826 -6.4748 4.3067 34 1 5.1647 -0.0366 2.0302 35 1 6.5168 -2.1541 3.7563 36 1 6.1187 -0.4808 4.2143 37 1 4.8162 -1.6643 3.9471 38 1 7.1484 -0.5703 0.5476 39 1 7.5826 0.1863 2.0990 40 1 7.7974 -1.5661 1.8725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089233765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:26 Heat of formation + Delta-G solvation = 80.878342 kcal Electronic energy + Delta-G solvation = -21518.046589 eV Core-core repulsion = 18396.025209 eV Total energy + Delta-G solvation = -3122.021381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28399 -38.02387 -35.99294 -33.92139 -32.54514 -32.03222 -29.99269 -29.52055 -27.81670 -26.58744 -25.35039 -24.57693 -22.04969 -20.39192 -19.58285 -18.62823 -16.93658 -16.50749 -16.05451 -15.32368 -14.78334 -14.58757 -13.93166 -13.83445 -13.66178 -13.41878 -13.15394 -12.78972 -12.49097 -12.44683 -12.25842 -12.11235 -11.72912 -11.51082 -11.40447 -11.26456 -11.10426 -10.99642 -10.75943 -10.59359 -10.36950 -10.13625 -10.03778 -9.80491 -9.11285 -9.04718 -8.52793 -8.06738 -7.45923 -6.02857 -3.96783 1.84064 2.21271 2.70761 3.06429 3.25165 3.34782 3.35503 4.41520 4.51776 4.59038 4.75356 4.99833 5.06982 5.18118 5.26385 5.28410 5.34858 5.46900 5.58071 5.63768 5.70279 5.80381 5.81964 5.86786 6.04262 6.14278 6.33938 6.42666 6.50193 6.54988 6.78072 6.83221 6.96926 7.02005 7.40692 7.62583 7.70824 7.82021 7.96246 8.66598 9.10397 9.58162 11.09666 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019122 B = 0.005960 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.929408 B = 4696.834634 C = 5439.091364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.086 3.914 3 N -0.294 5.294 4 N -0.367 5.367 5 C 0.097 3.903 6 C 0.126 3.874 7 C 0.105 3.895 8 N -0.506 5.506 9 C 0.157 3.843 10 C -0.497 4.497 11 H 0.090 0.910 12 C 0.068 3.932 13 N -0.899 5.899 14 Si 0.866 3.134 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.085 3.915 19 C -0.137 4.137 20 C -0.190 4.190 21 C -0.170 4.170 22 Cl -0.034 7.034 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.024 0.976 32 H -0.001 1.001 33 H 0.262 0.738 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.029 0.971 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 12.592 -9.490 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 N -0.117 5.117 4 N -0.150 5.150 5 C -0.044 4.044 6 C -0.003 4.003 7 C -0.025 4.025 8 N -0.230 5.230 9 C 0.032 3.968 10 C -0.535 4.535 11 H 0.108 0.892 12 C -0.134 4.134 13 N -0.539 5.539 14 Si 0.694 3.306 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.193 1.193 18 C -0.023 4.023 19 C -0.194 4.194 20 C -0.249 4.249 21 C -0.209 4.209 22 Cl -0.006 7.006 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.042 0.958 32 H 0.017 0.983 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.818 13.533 -9.155 17.034 hybrid contribution 1.564 -1.176 -1.007 2.200 sum -3.254 12.358 -10.161 16.326 Atomic orbital electron populations 1.20186 0.86293 1.03276 1.03295 1.22193 0.97102 0.89161 0.99603 1.77320 0.86177 1.21807 1.26437 1.48054 1.05422 1.03944 1.57545 1.22001 0.84251 0.94815 1.03357 1.20835 0.96527 0.84116 0.98794 1.20786 0.90774 0.96861 0.94054 1.62176 1.47558 1.05216 1.08070 1.20365 0.90303 0.86960 0.99188 1.21127 1.21733 1.10136 1.00527 0.89199 1.24869 0.97056 0.96442 0.94989 1.69876 1.40963 1.20430 1.22601 0.87001 0.82322 0.78439 0.82823 1.20493 1.21267 1.19346 1.21615 0.91528 0.93160 0.96032 1.22018 1.04154 1.00818 0.92427 1.22561 1.00069 1.02409 0.99832 1.20257 0.91927 0.87350 1.21357 1.98325 1.89523 1.15080 1.97662 0.90217 0.90890 0.90190 0.90814 0.89264 0.88772 0.93935 0.88397 0.95753 0.98344 0.92765 0.92522 0.88857 0.95194 0.92209 0.93681 0.92852 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.31 36.00 0.37 -0.44 16 2 C 0.09 1.31 7.22 -82.38 -0.59 0.71 16 3 N -0.29 -4.65 12.58 33.68 0.42 -4.22 16 4 N -0.37 -5.45 3.88 -63.85 -0.25 -5.70 16 5 C 0.10 1.04 10.49 59.84 0.63 1.67 16 6 C 0.13 2.06 5.80 -82.20 -0.48 1.58 16 7 C 0.11 1.74 4.82 -4.98 -0.02 1.71 16 8 N -0.51 -9.84 4.36 -229.52 -1.00 -10.84 16 9 C 0.16 3.52 3.59 -4.98 -0.02 3.50 16 10 C -0.50 -13.17 7.22 -34.44 -0.25 -13.42 16 11 H 0.09 2.63 6.36 -52.49 -0.33 2.29 16 12 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 13 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 14 Si 0.87 20.68 27.38 -169.99 -4.65 16.03 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.16 6.68 56.52 0.38 -5.79 16 18 C 0.09 1.49 2.41 -67.71 -0.16 1.33 16 19 C -0.14 -2.67 7.80 37.16 0.29 -2.38 16 20 C -0.19 -2.90 7.50 37.16 0.28 -2.62 16 21 C -0.17 -2.83 6.63 -39.97 -0.27 -3.09 16 22 Cl -0.03 -0.56 28.77 -51.86 -1.49 -2.06 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.99 4.10 -51.93 -0.21 0.78 16 29 H 0.04 0.62 5.25 -51.93 -0.27 0.35 16 30 H 0.10 1.65 7.55 -51.93 -0.39 1.26 16 31 H 0.02 0.56 6.92 -51.93 -0.36 0.21 16 32 H 0.00 -0.02 4.64 -51.93 -0.24 -0.26 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.06 0.93 5.52 -51.93 -0.29 0.64 16 35 H 0.09 2.09 5.91 -51.93 -0.31 1.79 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 1.27 7.48 -51.93 -0.39 0.89 16 38 H 0.04 0.61 5.74 -51.93 -0.30 0.31 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.30 6.37 -51.93 -0.33 0.97 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -30.39 322.07 -7.20 -37.59 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.53 Total: -0.10 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.32 Total: -9.67 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.05 Total: -46.65 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.65 Total: 16.03 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.49 Total: -2.06 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.39 -7.20 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089233765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.468 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds