Wall clock time and date at job start Tue Mar 31 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30859 * 125.89327 * 2 1 4 4 N 1.40086 * 108.22479 * 179.76963 * 3 2 1 5 5 C 1.46495 * 126.03566 * 180.30521 * 4 3 2 6 6 C 1.35039 * 107.92368 * 0.41797 * 4 3 2 7 7 C 1.50703 * 126.13418 * 179.84940 * 6 4 3 8 8 N 1.46896 * 109.47183 * 97.13443 * 7 6 4 9 9 C 1.46901 * 111.00405 * 159.70830 * 8 7 6 10 10 C 1.50701 * 109.47350 * 202.12355 * 9 8 7 11 11 H 1.08000 * 119.99710 * 4.64579 * 10 9 8 12 12 C 1.37877 * 120.00037 * 184.64193 * 10 9 8 13 13 N 1.31517 * 120.00153 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00050 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46815 * 89.99556 * 14 12 10 16 16 H 1.48489 * 109.47201 * 209.99841 * 14 12 10 17 17 H 1.48496 * 109.46766 * 330.00120 * 14 12 10 18 18 C 1.46907 * 110.99884 * 283.65945 * 8 7 6 19 19 C 1.53004 * 109.47058 * 169.64054 * 18 8 7 20 20 C 1.52999 * 109.46876 * 289.63589 * 18 8 7 21 21 C 1.35376 * 107.73009 * 359.58804 * 6 4 3 22 22 Cl 1.73600 * 126.04588 * 180.29829 * 21 6 4 23 23 H 1.08998 * 109.47364 * 269.97433 * 1 2 3 24 24 H 1.09004 * 109.47622 * 29.97554 * 1 2 3 25 25 H 1.08999 * 109.47410 * 149.97424 * 1 2 3 26 26 H 1.09001 * 109.47076 * 275.39146 * 5 4 3 27 27 H 1.08996 * 109.47371 * 35.38967 * 5 4 3 28 28 H 1.09004 * 109.47246 * 155.38923 * 5 4 3 29 29 H 1.08995 * 109.47103 * 337.13310 * 7 6 4 30 30 H 1.09005 * 109.47288 * 217.12979 * 7 6 4 31 31 H 1.09001 * 109.46633 * 322.12170 * 9 8 7 32 32 H 1.08992 * 109.47318 * 82.12098 * 9 8 7 33 33 H 0.96993 * 120.00160 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.46887 * 49.63824 * 18 8 7 35 35 H 1.08998 * 109.47110 * 68.92558 * 19 18 8 36 36 H 1.08999 * 109.46693 * 188.92489 * 19 18 8 37 37 H 1.08999 * 109.46886 * 308.92383 * 19 18 8 38 38 H 1.08999 * 109.47083 * 51.86982 * 20 18 8 39 39 H 1.09004 * 109.47031 * 171.86266 * 20 18 8 40 40 H 1.08997 * 109.47213 * 291.86674 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6089 0.6349 0.0053 5 6 4.7896 1.5021 0.0135 6 6 3.6149 -0.7154 -0.0008 7 6 4.8360 -1.5986 -0.0014 8 7 5.1281 -2.0313 1.3717 9 6 5.9714 -3.2341 1.3766 10 6 5.8119 -3.9541 2.6909 11 1 5.0950 -3.6002 3.4169 12 6 6.5812 -5.0646 2.9663 13 7 6.4417 -5.6933 4.1131 14 14 7.8217 -5.6764 1.7107 15 1 9.1313 -5.0176 1.9474 16 1 7.9762 -7.1472 1.8436 17 1 7.3436 -5.3504 0.3432 18 6 5.7517 -0.9480 2.1436 19 6 5.8046 -1.3400 3.6216 20 6 7.1722 -0.7073 1.6286 21 6 2.3273 -1.1335 -0.0005 22 17 1.7892 -2.7840 0.0002 23 1 -0.3634 -0.0005 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 5.0302 1.7978 -1.0077 27 1 4.5836 2.3908 0.6100 28 1 5.6334 0.9630 0.4441 29 1 5.6865 -1.0425 -0.3958 30 1 4.6520 -2.4726 -0.6263 31 1 5.6694 -3.8929 0.5624 32 1 7.0144 -2.9471 1.2439 33 1 6.9826 -6.4748 4.3067 34 1 5.1647 -0.0366 2.0302 35 1 6.5168 -2.1541 3.7563 36 1 6.1187 -0.4808 4.2143 37 1 4.8162 -1.6643 3.9471 38 1 7.1484 -0.5703 0.5476 39 1 7.5826 0.1863 2.0990 40 1 7.7974 -1.5661 1.8725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089233765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:25 Heat of formation + Delta-G solvation = 60.837298 kcal Electronic energy + Delta-G solvation = -21518.915634 eV Core-core repulsion = 18396.025209 eV Total energy + Delta-G solvation = -3122.890426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.44110 -39.50103 -37.24601 -35.08789 -34.49776 -33.34762 -31.47052 -30.54533 -29.43386 -27.98524 -26.39094 -25.97551 -23.84333 -21.62867 -20.79047 -20.05032 -18.83073 -17.75977 -17.35500 -16.71389 -16.27489 -15.96154 -15.51368 -15.09298 -14.91939 -14.49067 -14.45937 -14.18425 -14.04338 -13.48182 -13.32983 -13.28089 -13.10982 -13.04098 -12.78510 -12.72103 -12.48345 -12.43764 -12.38481 -12.05519 -11.89664 -11.81842 -11.49501 -11.35141 -11.07084 -10.63142 -10.17397 -9.26648 -8.95433 -8.15420 -6.12767 0.64979 1.10736 1.36712 1.40454 1.48791 1.52697 1.90403 2.41338 3.17306 3.19604 3.49373 3.56224 3.88431 4.04236 4.15433 4.26445 4.31651 4.34841 4.39335 4.50110 4.61789 4.68313 4.78978 4.80925 4.84145 4.90800 4.95171 5.01575 5.06455 5.15925 5.18423 5.47700 5.49724 5.67017 5.73306 5.88144 6.07012 6.43063 6.57069 6.70521 6.93040 7.45613 9.00646 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019122 B = 0.005960 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.929408 B = 4696.834634 C = 5439.091364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.079 3.921 3 N -0.307 5.307 4 N -0.364 5.364 5 C 0.086 3.914 6 C 0.117 3.883 7 C 0.111 3.889 8 N -0.527 5.527 9 C 0.168 3.832 10 C -0.487 4.487 11 H 0.048 0.952 12 C 0.007 3.993 13 N -0.952 5.952 14 Si 0.932 3.068 15 H -0.268 1.268 16 H -0.292 1.292 17 H -0.249 1.249 18 C 0.087 3.913 19 C -0.129 4.129 20 C -0.183 4.183 21 C -0.191 4.191 22 Cl -0.044 7.044 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.021 0.979 32 H 0.012 0.988 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 14.682 -11.661 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 N -0.130 5.130 4 N -0.146 5.146 5 C -0.053 4.053 6 C -0.014 4.014 7 C -0.019 4.019 8 N -0.251 5.251 9 C 0.042 3.958 10 C -0.526 4.526 11 H 0.066 0.934 12 C -0.189 4.189 13 N -0.594 5.594 14 Si 0.756 3.244 15 H -0.193 1.193 16 H -0.218 1.218 17 H -0.172 1.172 18 C -0.021 4.021 19 C -0.186 4.186 20 C -0.241 4.241 21 C -0.230 4.230 22 Cl -0.016 7.016 23 H 0.104 0.896 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.900 15.669 -11.348 19.736 hybrid contribution 1.191 -1.717 -0.262 2.106 sum -2.709 13.952 -11.610 18.352 Atomic orbital electron populations 1.20311 0.84104 1.04485 1.04073 1.22691 0.98633 0.88453 0.98881 1.77294 0.86763 1.22095 1.26892 1.48393 1.06058 1.03729 1.56450 1.22353 0.82887 0.94737 1.05348 1.20789 0.96223 0.84957 0.99387 1.20724 0.91880 0.97172 0.92101 1.61951 1.47530 1.05203 1.10427 1.20091 0.91493 0.87984 0.96258 1.21308 1.19853 1.09978 1.01413 0.93381 1.25688 0.99452 0.96885 0.96892 1.70047 1.42824 1.21400 1.25112 0.85944 0.80022 0.77392 0.81003 1.19297 1.21813 1.17238 1.21620 0.93481 0.92881 0.94106 1.21863 1.01195 1.00562 0.95029 1.22463 0.97600 1.02598 1.01482 1.20555 0.92748 0.87328 1.22396 1.98315 1.89650 1.15885 1.97741 0.89551 0.89207 0.89469 0.88369 0.87907 0.88327 0.91156 0.88957 0.96074 0.97044 0.92971 0.90839 0.92387 0.92478 0.95354 0.91367 0.90103 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.31 71.23 0.73 -0.76 16 2 C 0.08 2.30 7.22 43.11 0.31 2.61 16 3 N -0.31 -9.03 12.58 -47.35 -0.60 -9.62 16 4 N -0.36 -9.81 3.88 -355.92 -1.38 -11.19 16 5 C 0.09 1.52 10.49 127.77 1.34 2.86 16 6 C 0.12 3.57 5.80 41.41 0.24 3.81 16 7 C 0.11 3.41 4.82 85.56 0.41 3.82 16 8 N -0.53 -19.90 4.36 -880.06 -3.84 -23.74 16 9 C 0.17 7.39 3.59 85.56 0.31 7.70 16 10 C -0.49 -26.49 7.22 25.60 0.18 -26.31 16 11 H 0.05 2.97 6.36 -2.91 -0.02 2.95 16 12 C 0.01 0.39 5.47 84.65 0.46 0.85 16 13 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 14 Si 0.93 42.61 27.38 68.60 1.88 44.48 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.25 -10.48 6.68 99.48 0.66 -9.82 16 18 C 0.09 2.89 2.41 44.91 0.11 3.00 16 19 C -0.13 -5.06 7.80 71.98 0.56 -4.50 16 20 C -0.18 -4.96 7.50 71.98 0.54 -4.42 16 21 C -0.19 -6.15 6.63 22.02 0.15 -6.00 16 22 Cl -0.04 -1.45 28.77 -2.72 -0.08 -1.53 16 23 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.09 1.68 8.01 -2.39 -0.02 1.66 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.10 1.64 4.10 -2.39 -0.01 1.63 16 29 H 0.07 1.76 5.25 -2.39 -0.01 1.75 16 30 H 0.09 2.95 7.55 -2.38 -0.02 2.93 16 31 H 0.02 0.95 6.92 -2.39 -0.02 0.93 16 32 H 0.01 0.50 4.64 -2.39 -0.01 0.49 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.07 2.21 5.52 -2.39 -0.01 2.20 16 35 H 0.06 2.68 5.91 -2.39 -0.01 2.66 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.03 1.24 7.48 -2.39 -0.02 1.22 16 38 H 0.07 1.53 5.74 -2.39 -0.01 1.52 16 39 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.05 1.62 6.37 -2.39 -0.02 1.60 16 Total: -1.00 -67.90 322.07 2.64 -65.25 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.01 Total: 11.97 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 5.35 Total: -17.35 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -5.52 Total: -102.83 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.48 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -67.90 2.64 -65.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089233765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.089 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds