Wall clock time and date at job start Tue Mar 31 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46889 * 2 1 4 4 N 1.46508 * 109.46794 * 175.36758 * 3 2 1 5 5 C 1.36935 * 119.99749 * 263.96963 * 4 3 2 6 6 H 1.07996 * 119.99624 * 187.18133 * 5 4 3 7 7 C 1.38813 * 120.00244 * 7.17906 * 5 4 3 8 8 N 1.31618 * 119.99850 * 25.02214 * 7 5 4 9 9 Si 1.86800 * 120.00013 * 205.02760 * 7 5 4 10 10 H 1.48501 * 109.47104 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47020 * 119.99965 * 9 7 5 12 12 H 1.48498 * 109.46883 * 239.99643 * 9 7 5 13 13 C 1.46500 * 120.00035 * 83.96898 * 4 3 2 14 14 C 1.50698 * 109.47054 * 84.43116 * 13 4 3 15 15 C 1.35471 * 126.05015 * 273.10783 * 14 13 4 16 16 Cl 1.73604 * 126.14084 * 0.02562 * 15 14 13 17 17 N 1.34985 * 107.71506 * 180.02562 * 15 14 13 18 18 C 1.46499 * 126.03101 * 179.97438 * 17 15 14 19 19 N 1.40078 * 107.93067 * 0.02562 * 17 15 14 20 20 C 1.30841 * 108.23459 * 359.71929 * 19 17 15 21 21 C 1.50699 * 125.88895 * 180.26256 * 20 19 17 22 22 C 1.53004 * 109.46629 * 276.30512 * 21 20 19 23 23 H 1.08998 * 109.47120 * 60.00566 * 1 2 3 24 24 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47252 * 300.00223 * 1 2 3 26 26 H 1.09001 * 109.46879 * 239.99095 * 2 1 3 27 27 H 1.09005 * 109.46631 * 119.99902 * 2 1 3 28 28 H 1.08999 * 109.47500 * 55.36478 * 3 2 1 29 29 H 1.08998 * 109.46834 * 295.36256 * 3 2 1 30 30 H 0.97001 * 120.00072 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47174 * 204.42795 * 13 4 3 32 32 H 1.09004 * 109.47278 * 324.42995 * 13 4 3 33 33 H 1.09003 * 109.46877 * 90.00847 * 18 17 15 34 34 H 1.09002 * 109.46675 * 209.99824 * 18 17 15 35 35 H 1.08995 * 109.47499 * 330.00211 * 18 17 15 36 36 H 1.08998 * 109.47668 * 36.30340 * 21 20 19 37 37 H 1.09000 * 109.47313 * 156.31500 * 21 20 19 38 38 H 1.09000 * 109.47235 * 64.63832 * 22 21 20 39 39 H 1.09001 * 109.46766 * 184.63602 * 22 21 20 40 40 H 1.09000 * 109.47139 * 304.63771 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5008 1.4440 0.1116 5 6 4.0938 1.6010 1.3358 6 1 5.1650 1.7184 1.4058 7 6 3.3179 1.6092 2.4869 8 7 2.1504 1.0017 2.4979 9 14 3.9310 2.4824 4.0202 10 1 5.2625 3.0816 3.7497 11 1 2.9731 3.5529 4.3966 12 1 4.0448 1.5063 5.1336 13 6 4.3271 1.2775 -1.0867 14 6 4.5094 2.6130 -1.7607 15 6 3.6731 3.1674 -2.6709 16 17 2.2010 2.4675 -3.2684 17 7 4.1899 4.3616 -3.0297 18 6 3.6075 5.2979 -3.9943 19 7 5.3821 4.5469 -2.3180 20 6 5.5695 3.5015 -1.5539 21 6 6.7296 3.2896 -0.6156 22 6 7.9175 2.7203 -1.3939 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6104 1.9798 0.8455 29 1 1.7460 1.9317 -0.9286 30 1 1.6080 1.0078 3.3021 31 1 5.3008 0.8774 -0.8038 32 1 3.8364 0.5878 -1.7735 33 1 2.9389 5.9848 -3.4754 34 1 4.4040 5.8626 -4.4788 35 1 3.0463 4.7429 -4.7460 36 1 7.0122 4.2416 -0.1664 37 1 6.4398 2.5897 0.1682 38 1 8.2596 3.4546 -2.1232 39 1 8.7280 2.4900 -0.7025 40 1 7.6110 1.8107 -1.9105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:30 Heat of formation + Delta-G solvation = 88.003607 kcal Electronic energy + Delta-G solvation = -21547.339210 eV Core-core repulsion = 18425.626804 eV Total energy + Delta-G solvation = -3121.712406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91280 -36.52423 -36.16542 -34.36726 -32.07815 -31.74678 -31.16844 -29.28114 -26.94143 -25.39773 -24.90887 -23.03867 -21.71532 -20.29952 -19.86276 -18.90429 -16.66811 -16.45801 -15.57535 -14.87919 -14.64812 -14.01834 -13.70767 -13.52189 -13.36154 -13.13657 -12.99476 -12.69617 -12.48279 -12.21372 -12.00372 -11.51241 -11.41881 -11.27172 -11.12327 -10.98863 -10.81328 -10.68906 -10.60770 -10.31071 -10.08853 -9.92160 -9.80078 -9.60622 -9.06740 -8.72674 -8.21837 -7.89052 -6.76181 -5.66396 -2.94538 1.85826 2.06358 2.97325 3.12306 3.44716 3.54126 3.54921 4.61243 4.64376 5.13976 5.19749 5.39244 5.41673 5.44321 5.64927 5.70328 5.77745 5.83095 5.90413 6.22339 6.25069 6.30295 6.33036 6.44656 6.51771 6.63584 6.69860 6.74751 6.90053 7.03695 7.07045 7.11010 7.30103 7.41081 7.78623 7.94141 7.99926 8.16988 8.47045 9.34768 9.98738 10.44279 11.36975 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.007954 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.541160 B = 3519.607049 C = 4887.402843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.166 3.834 4 N -0.588 5.588 5 C -0.242 4.242 6 H 0.074 0.926 7 C -0.002 4.002 8 N -0.891 5.891 9 Si 0.885 3.115 10 H -0.280 1.280 11 H -0.293 1.293 12 H -0.295 1.295 13 C 0.217 3.783 14 C -0.193 4.193 15 C 0.116 3.884 16 Cl -0.013 7.013 17 N -0.380 5.380 18 C 0.103 3.897 19 N -0.288 5.288 20 C 0.101 3.899 21 C -0.047 4.047 22 C -0.141 4.141 23 H 0.027 0.973 24 H 0.030 0.970 25 H 0.053 0.947 26 H 0.014 0.986 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.011 0.989 30 H 0.248 0.752 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 3.716 -11.857 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.041 3.959 4 N -0.307 5.307 5 C -0.370 4.370 6 H 0.092 0.908 7 C -0.199 4.199 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.222 1.222 13 C 0.088 3.912 14 C -0.208 4.208 15 C -0.036 4.036 16 Cl 0.015 6.985 17 N -0.166 5.166 18 C -0.038 4.038 19 N -0.111 5.111 20 C -0.065 4.065 21 C -0.086 4.086 22 C -0.199 4.199 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.923 4.854 -12.240 13.488 hybrid contribution -0.535 -0.110 0.926 1.075 sum 2.388 4.743 -11.314 12.498 Atomic orbital electron populations 1.21594 0.98657 0.98996 0.99987 1.21973 0.92825 1.00785 1.00395 1.20973 0.82272 0.94362 0.98248 1.44142 1.01452 1.83574 1.01556 1.19284 0.92247 1.42228 0.83276 0.90823 1.24635 0.97263 1.00958 0.97057 1.70209 1.13529 1.42805 1.27210 0.86467 0.78087 0.80045 0.83837 1.20504 1.21983 1.22222 1.19074 0.95680 0.88094 0.88385 1.21114 0.95177 1.03735 1.00788 1.21396 0.91568 0.89309 1.01338 1.98367 1.31372 1.81706 1.87029 1.48375 1.18491 1.14284 1.35472 1.21763 0.98911 0.92500 0.90645 1.77328 0.99280 1.22826 1.11674 1.22033 0.96873 0.91175 0.96384 1.20063 0.90213 1.02633 0.95729 1.21692 0.97142 1.00975 1.00108 0.95344 0.95084 0.92838 0.96714 0.89096 0.89539 0.97047 0.94109 0.92141 0.93816 0.90997 0.89382 0.89918 0.90827 0.88300 0.93055 0.92189 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.91 37.16 0.37 -2.28 16 2 C -0.12 -2.71 5.68 -26.73 -0.15 -2.86 16 3 C 0.17 3.95 4.90 -4.04 -0.02 3.93 16 4 N -0.59 -14.07 2.52 -174.61 -0.44 -14.51 16 5 C -0.24 -6.27 9.67 -15.06 -0.15 -6.42 16 6 H 0.07 1.85 6.36 -52.49 -0.33 1.52 16 7 C 0.00 -0.06 4.92 -17.43 -0.09 -0.15 16 8 N -0.89 -24.39 8.68 55.49 0.48 -23.91 16 9 Si 0.89 21.44 29.62 -169.99 -5.04 16.41 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 C 0.22 4.44 5.64 -5.19 -0.03 4.41 16 14 C -0.19 -3.74 5.68 -105.00 -0.60 -4.34 16 15 C 0.12 2.08 7.43 -17.15 -0.13 1.95 16 16 Cl -0.01 -0.20 26.25 -51.86 -1.36 -1.56 16 17 N -0.38 -6.33 4.01 -64.90 -0.26 -6.59 16 18 C 0.10 1.19 11.31 59.85 0.68 1.87 16 19 N -0.29 -5.26 12.57 33.67 0.42 -4.84 16 20 C 0.10 1.88 6.47 -82.41 -0.53 1.35 16 21 C -0.05 -0.76 6.23 -27.88 -0.17 -0.94 16 22 C -0.14 -1.85 9.89 37.16 0.37 -1.49 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 2.35 6.61 -51.93 -0.34 2.01 16 28 H 0.09 2.34 5.75 -51.93 -0.30 2.04 16 29 H 0.01 0.25 5.76 -51.93 -0.30 -0.05 16 30 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.06 1.19 7.45 -51.93 -0.39 0.81 16 32 H 0.04 0.87 7.97 -51.93 -0.41 0.46 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.80 7.80 -51.93 -0.41 0.39 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.74 5.94 -51.93 -0.31 1.44 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 336.10 15.07 5.07 5.07 Total: -1.00 -29.06 336.10 -7.73 -36.79 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.15 Total: -1.87 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.45 Total: -4.97 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.20 Total: -49.86 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.04 Total: 16.41 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.36 Total: -1.56 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.06 -7.73 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.797 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds