Wall clock time and date at job start Tue Mar 31 2020 05:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46889 * 2 1 4 4 N 1.46508 * 109.46794 * 175.36758 * 3 2 1 5 5 C 1.36935 * 119.99749 * 263.96963 * 4 3 2 6 6 H 1.07996 * 119.99624 * 187.18133 * 5 4 3 7 7 C 1.38813 * 120.00244 * 7.17906 * 5 4 3 8 8 N 1.31618 * 119.99850 * 25.02214 * 7 5 4 9 9 Si 1.86800 * 120.00013 * 205.02760 * 7 5 4 10 10 H 1.48501 * 109.47104 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47020 * 119.99965 * 9 7 5 12 12 H 1.48498 * 109.46883 * 239.99643 * 9 7 5 13 13 C 1.46500 * 120.00035 * 83.96898 * 4 3 2 14 14 C 1.50698 * 109.47054 * 84.43116 * 13 4 3 15 15 C 1.35471 * 126.05015 * 273.10783 * 14 13 4 16 16 Cl 1.73604 * 126.14084 * 0.02562 * 15 14 13 17 17 N 1.34985 * 107.71506 * 180.02562 * 15 14 13 18 18 C 1.46499 * 126.03101 * 179.97438 * 17 15 14 19 19 N 1.40078 * 107.93067 * 0.02562 * 17 15 14 20 20 C 1.30841 * 108.23459 * 359.71929 * 19 17 15 21 21 C 1.50699 * 125.88895 * 180.26256 * 20 19 17 22 22 C 1.53004 * 109.46629 * 276.30512 * 21 20 19 23 23 H 1.08998 * 109.47120 * 60.00566 * 1 2 3 24 24 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47252 * 300.00223 * 1 2 3 26 26 H 1.09001 * 109.46879 * 239.99095 * 2 1 3 27 27 H 1.09005 * 109.46631 * 119.99902 * 2 1 3 28 28 H 1.08999 * 109.47500 * 55.36478 * 3 2 1 29 29 H 1.08998 * 109.46834 * 295.36256 * 3 2 1 30 30 H 0.97001 * 120.00072 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47174 * 204.42795 * 13 4 3 32 32 H 1.09004 * 109.47278 * 324.42995 * 13 4 3 33 33 H 1.09003 * 109.46877 * 90.00847 * 18 17 15 34 34 H 1.09002 * 109.46675 * 209.99824 * 18 17 15 35 35 H 1.08995 * 109.47499 * 330.00211 * 18 17 15 36 36 H 1.08998 * 109.47668 * 36.30340 * 21 20 19 37 37 H 1.09000 * 109.47313 * 156.31500 * 21 20 19 38 38 H 1.09000 * 109.47235 * 64.63832 * 22 21 20 39 39 H 1.09001 * 109.46766 * 184.63602 * 22 21 20 40 40 H 1.09000 * 109.47139 * 304.63771 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5008 1.4440 0.1116 5 6 4.0938 1.6010 1.3358 6 1 5.1650 1.7184 1.4058 7 6 3.3179 1.6092 2.4869 8 7 2.1504 1.0017 2.4979 9 14 3.9310 2.4824 4.0202 10 1 5.2625 3.0816 3.7497 11 1 2.9731 3.5529 4.3966 12 1 4.0448 1.5063 5.1336 13 6 4.3271 1.2775 -1.0867 14 6 4.5094 2.6130 -1.7607 15 6 3.6731 3.1674 -2.6709 16 17 2.2010 2.4675 -3.2684 17 7 4.1899 4.3616 -3.0297 18 6 3.6075 5.2979 -3.9943 19 7 5.3821 4.5469 -2.3180 20 6 5.5695 3.5015 -1.5539 21 6 6.7296 3.2896 -0.6156 22 6 7.9175 2.7203 -1.3939 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6104 1.9798 0.8455 29 1 1.7460 1.9317 -0.9286 30 1 1.6080 1.0078 3.3021 31 1 5.3008 0.8774 -0.8038 32 1 3.8364 0.5878 -1.7735 33 1 2.9389 5.9848 -3.4754 34 1 4.4040 5.8626 -4.4788 35 1 3.0463 4.7429 -4.7460 36 1 7.0122 4.2416 -0.1664 37 1 6.4398 2.5897 0.1682 38 1 8.2596 3.4546 -2.1232 39 1 8.7280 2.4900 -0.7025 40 1 7.6110 1.8107 -1.9105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:29 Heat of formation + Delta-G solvation = 73.192194 kcal Electronic energy + Delta-G solvation = -21547.981481 eV Core-core repulsion = 18425.626804 eV Total energy + Delta-G solvation = -3122.354677 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.26870 -38.01591 -37.80427 -35.65833 -33.67451 -33.55265 -32.49222 -30.85418 -28.24035 -27.26639 -26.37483 -24.30157 -23.42816 -21.82465 -21.51049 -20.33704 -18.53881 -17.80721 -17.06406 -16.53577 -16.00868 -15.62035 -15.27778 -15.08905 -14.78187 -14.71086 -14.41771 -13.97369 -13.80123 -13.47834 -13.32651 -13.18081 -13.01224 -12.75662 -12.62732 -12.44947 -12.35002 -12.32479 -12.04837 -12.01858 -11.85454 -11.69696 -11.45938 -11.30210 -10.92632 -10.19363 -10.03984 -9.32617 -8.67127 -7.67330 -4.95234 0.50761 0.70149 1.48722 1.54868 1.61073 1.69682 1.79645 2.64130 3.39810 3.48838 3.93919 4.01978 4.21400 4.28893 4.34062 4.53339 4.55442 4.58323 4.60233 4.69571 4.72009 4.88281 4.95519 5.04899 5.10760 5.14180 5.17820 5.27127 5.30654 5.37574 5.55951 5.60950 5.65888 5.80502 5.87124 5.99142 6.27304 6.48589 6.63147 7.35041 8.07261 8.48497 9.33810 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.007954 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.541160 B = 3519.607049 C = 4887.402843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 C 0.174 3.826 4 N -0.600 5.600 5 C -0.239 4.239 6 H 0.078 0.922 7 C -0.050 4.050 8 N -0.909 5.909 9 Si 0.936 3.064 10 H -0.271 1.271 11 H -0.304 1.304 12 H -0.300 1.300 13 C 0.223 3.777 14 C -0.221 4.221 15 C 0.116 3.884 16 Cl 0.005 6.995 17 N -0.376 5.376 18 C 0.091 3.909 19 N -0.301 5.301 20 C 0.091 3.909 21 C -0.047 4.047 22 C -0.131 4.131 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.023 0.977 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.026 0.974 30 H 0.240 0.760 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 4.365 -13.491 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.151 4.151 3 C 0.049 3.951 4 N -0.321 5.321 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.245 4.245 8 N -0.557 5.557 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.232 1.232 12 H -0.228 1.228 13 C 0.095 3.905 14 C -0.236 4.236 15 C -0.038 4.038 16 Cl 0.033 6.967 17 N -0.161 5.161 18 C -0.048 4.048 19 N -0.125 5.125 20 C -0.074 4.074 21 C -0.086 4.086 22 C -0.189 4.189 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.281 5.525 -13.911 15.324 hybrid contribution -0.658 -0.280 1.301 1.484 sum 2.623 5.245 -12.611 13.907 Atomic orbital electron populations 1.21491 0.96514 1.00259 1.00108 1.21787 0.94727 0.99602 0.98949 1.20808 0.82314 0.94723 0.97272 1.44314 1.01866 1.83815 1.02063 1.19550 0.92531 1.40665 0.84142 0.90466 1.25170 0.97972 1.02206 0.99155 1.70354 1.14307 1.43943 1.27124 0.85659 0.77655 0.78633 0.81388 1.19540 1.23201 1.22755 1.19041 0.95164 0.89062 0.87223 1.20922 0.96635 1.03619 1.02443 1.21504 0.91777 0.89722 1.00809 1.98369 1.30191 1.81517 1.86664 1.48744 1.17774 1.14323 1.35277 1.22195 0.99910 0.92374 0.90344 1.77278 1.00264 1.22806 1.12144 1.22330 0.97317 0.91036 0.96747 1.20088 0.90745 1.02453 0.95321 1.21626 0.96369 1.00713 1.00236 0.93404 0.93268 0.94443 0.95823 0.92646 0.93034 0.95551 0.94980 0.91998 0.93403 0.89882 0.87449 0.87854 0.90493 0.90177 0.92528 0.90250 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.91 71.98 0.71 -4.10 16 2 C -0.11 -4.97 5.68 30.59 0.17 -4.79 16 3 C 0.17 8.25 4.90 86.38 0.42 8.67 16 4 N -0.60 -28.77 2.52 -706.33 -1.78 -30.55 16 5 C -0.24 -12.50 9.67 84.03 0.81 -11.69 16 6 H 0.08 3.90 6.36 -2.91 -0.02 3.89 16 7 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 8 N -0.91 -50.94 8.68 21.65 0.19 -50.75 16 9 Si 0.94 44.79 29.62 68.60 2.03 46.82 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 13 C 0.22 9.00 5.64 85.63 0.48 9.49 16 14 C -0.22 -8.37 5.68 -20.11 -0.11 -8.48 16 15 C 0.12 3.95 7.43 83.57 0.62 4.57 16 16 Cl 0.00 0.14 26.25 -2.72 -0.07 0.06 16 17 N -0.38 -11.72 4.01 -359.25 -1.44 -13.16 16 18 C 0.09 1.84 11.31 127.77 1.44 3.28 16 19 N -0.30 -10.54 12.57 -47.39 -0.60 -11.14 16 20 C 0.09 3.29 6.47 43.10 0.28 3.57 16 21 C -0.05 -1.48 6.23 29.85 0.19 -1.29 16 22 C -0.13 -3.25 9.89 71.98 0.71 -2.54 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 2.90 6.61 -2.38 -0.02 2.88 16 28 H 0.05 2.83 5.75 -2.39 -0.01 2.82 16 29 H 0.03 1.15 5.76 -2.39 -0.01 1.14 16 30 H 0.24 13.38 8.31 -92.71 -0.77 12.61 16 31 H 0.06 2.43 7.45 -2.39 -0.02 2.42 16 32 H 0.05 1.86 7.97 -2.38 -0.02 1.84 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 1.65 7.80 -2.39 -0.02 1.63 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.81 5.94 -2.39 -0.01 2.80 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -61.99 336.10 5.51 -56.49 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.02 Total: 7.87 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 6.15 Total: -5.64 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -3.63 Total: -105.60 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.07 Total: 0.06 kcal Total: -61.99 5.51 -56.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.678 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds