Wall clock time and date at job start Tue Mar 31 2020 06:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47139 * 299.99996 * 3 2 1 6 6 H 1.48498 * 109.47086 * 59.99604 * 3 2 1 7 7 C 1.37879 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99821 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47027 * 184.80912 * 9 7 2 11 11 C 1.46899 * 111.00098 * 284.37140 * 10 9 7 12 12 C 1.50704 * 109.47565 * 169.99795 * 11 10 9 13 13 C 1.33990 * 126.90785 * 259.98013 * 12 11 10 14 14 O 1.34451 * 110.15569 * 180.02562 * 13 12 11 15 15 C 1.34810 * 110.88527 * 0.02562 * 14 13 12 16 16 C 1.38943 * 133.49453 * 180.02562 * 15 14 13 17 17 C 1.37852 * 119.81750 * 179.97438 * 16 15 14 18 18 C 1.38738 * 120.68573 * 0.02643 * 17 16 15 19 19 C 1.36744 * 120.41807 * 359.97438 * 18 17 16 20 20 C 1.39403 * 119.71651 * 0.02562 * 19 18 17 21 21 C 1.46904 * 111.00124 * 160.42099 * 10 9 7 22 22 C 1.52999 * 109.46855 * 293.25793 * 21 10 9 23 23 C 1.52995 * 117.50241 * 244.83860 * 22 21 10 24 24 C 1.53001 * 117.49585 * 176.17708 * 22 21 10 25 25 H 0.96993 * 119.99798 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47583 * 64.80717 * 9 7 2 27 27 H 1.09009 * 109.47145 * 304.80468 * 9 7 2 28 28 H 1.09006 * 109.46759 * 50.00112 * 11 10 9 29 29 H 1.08996 * 109.47366 * 290.00364 * 11 10 9 30 30 H 1.08001 * 124.92378 * 359.97438 * 13 12 11 31 31 H 1.07994 * 120.09352 * 0.22565 * 16 15 14 32 32 H 1.08002 * 119.65487 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.79281 * 179.97438 * 18 17 16 34 34 H 1.07998 * 120.14296 * 180.02562 * 19 18 17 35 35 H 1.08990 * 109.47295 * 53.26419 * 21 10 9 36 36 H 1.09002 * 109.46887 * 173.26427 * 21 10 9 37 37 H 1.08997 * 115.55058 * 30.51346 * 22 21 10 38 38 H 1.09000 * 117.50089 * 0.02562 * 23 22 21 39 39 H 1.09001 * 117.50052 * 145.02398 * 23 22 21 40 40 H 1.09001 * 117.49796 * 214.98332 * 24 22 21 41 41 H 1.08996 * 117.49890 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2014 -3.6132 0.1173 11 6 2.8974 -3.8470 -1.1551 12 6 4.0275 -4.8201 -0.9382 13 6 5.3267 -4.5254 -0.7945 14 8 6.0406 -5.6513 -0.6198 15 6 5.2404 -6.7360 -0.6419 16 6 5.4738 -8.0994 -0.5107 17 6 4.4197 -8.9850 -0.5796 18 6 3.1245 -8.5299 -0.7796 19 6 2.8733 -7.1922 -0.9111 20 6 3.9265 -6.2814 -0.8442 21 6 1.5277 -4.8336 0.5807 22 6 1.0448 -4.6346 2.0188 23 6 1.6762 -5.5095 3.1036 24 6 0.2353 -5.7664 2.6551 25 1 -0.4849 0.8400 -0.0004 26 1 0.6910 -2.5953 -0.9295 27 1 0.5611 -2.5203 0.8442 28 1 3.2965 -2.9043 -1.5295 29 1 2.1973 -4.2593 -1.8817 30 1 5.7406 -3.5281 -0.8165 31 1 6.4778 -8.4640 -0.3512 32 1 4.6041 -10.0442 -0.4769 33 1 2.3094 -9.2365 -0.8316 34 1 1.8632 -6.8427 -1.0662 35 1 0.6741 -5.0443 -0.0634 36 1 2.2256 -5.6700 0.5443 37 1 0.7788 -3.6125 2.2883 38 1 2.4360 -6.2266 2.7928 39 1 1.8252 -5.0631 4.0867 40 1 -0.5630 -5.4888 3.3434 41 1 0.0472 -6.6528 2.0493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:10 Heat of formation + Delta-G solvation = 61.356605 kcal Electronic energy + Delta-G solvation = -22408.866624 eV Core-core repulsion = 19256.138816 eV Total energy + Delta-G solvation = -3152.727808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.27748 -37.99615 -37.62566 -35.65734 -33.09258 -32.05831 -30.43229 -29.51050 -27.54912 -26.59334 -23.85352 -23.22066 -22.21253 -22.01236 -21.37915 -19.98980 -19.02645 -17.15772 -16.89129 -16.47905 -15.90537 -15.67476 -15.27346 -14.78070 -14.35017 -14.05718 -13.74180 -13.60286 -13.51454 -12.93935 -12.66201 -12.27943 -12.07378 -12.03520 -11.88640 -11.27897 -11.21923 -11.15674 -10.84932 -10.66449 -10.55721 -10.45791 -10.00032 -9.76883 -9.69451 -9.46916 -9.16964 -8.55252 -8.42407 -7.95589 -7.22790 -6.02552 -4.03664 1.01794 1.42894 2.58287 2.98796 3.30330 3.38214 3.42203 3.77975 4.22779 4.43260 4.63136 4.74310 4.92982 4.95672 5.12583 5.26811 5.29354 5.33048 5.38727 5.46028 5.56268 5.63381 5.70306 5.87019 5.93353 6.02013 6.09837 6.16234 6.26475 6.27252 6.32016 6.36695 6.43307 6.45842 6.53628 6.66106 6.74626 6.85935 7.22491 7.33309 7.35945 7.82036 8.11786 8.20587 8.54151 9.03947 9.60430 11.07953 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.005120 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.025857 B = 5467.093372 C = 6524.268512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.189 3.811 10 N -0.526 5.526 11 C 0.129 3.871 12 C -0.154 4.154 13 C 0.013 3.987 14 O -0.198 6.198 15 C 0.047 3.953 16 C -0.110 4.110 17 C -0.101 4.101 18 C -0.141 4.141 19 C -0.070 4.070 20 C -0.117 4.117 21 C 0.076 3.924 22 C -0.132 4.132 23 C -0.178 4.178 24 C -0.189 4.189 25 H 0.260 0.740 26 H -0.011 1.011 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.031 0.969 30 H 0.209 0.791 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.021 0.979 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 -15.950 -0.587 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.064 3.936 10 N -0.250 5.250 11 C 0.002 3.998 12 C -0.155 4.155 13 C -0.052 4.052 14 O -0.099 6.099 15 C 0.000 4.000 16 C -0.128 4.128 17 C -0.119 4.119 18 C -0.159 4.159 19 C -0.088 4.088 20 C -0.118 4.118 21 C -0.052 4.052 22 C -0.150 4.150 23 C -0.215 4.215 24 C -0.226 4.226 25 H 0.070 0.930 26 H 0.006 0.994 27 H 0.058 0.942 28 H 0.112 0.888 29 H 0.049 0.951 30 H 0.226 0.774 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.040 0.960 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.278 -15.699 -0.206 17.305 hybrid contribution -0.430 0.871 -0.495 1.091 sum 6.848 -14.827 -0.701 16.347 Atomic orbital electron populations 1.69965 1.06035 1.26611 1.51248 1.24980 0.94830 0.99229 0.95558 0.86482 0.80092 0.83603 0.77470 1.19679 1.21179 1.21091 1.21193 0.93511 0.89864 1.49603 0.91900 1.19833 0.90329 0.87309 0.96115 1.62120 1.31230 1.04918 1.26764 1.20319 0.91804 0.96256 0.91465 1.21315 0.95676 0.91724 1.06820 1.23819 0.90515 0.89074 1.01807 1.83992 1.36955 1.13398 1.75591 1.19633 0.88744 0.88665 1.02972 1.19873 1.00229 0.87639 1.05057 1.20841 0.91984 0.99035 1.00054 1.20723 0.96965 0.95272 1.02976 1.20394 0.98149 0.92195 0.98016 1.19924 0.93692 0.93556 1.04641 1.21890 0.96144 0.94277 0.92889 1.22383 1.02066 0.96678 0.93880 1.22899 0.95346 1.03675 0.99566 1.22920 0.94555 1.00809 1.04359 0.93021 0.99363 0.94241 0.88786 0.95091 0.77406 0.85455 0.85208 0.85690 0.85698 0.96048 0.90714 0.86699 0.89540 0.89420 0.89261 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.50 -13.73 8.61 -34.44 -0.30 -14.03 16 8 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 9 C 0.19 4.78 4.58 -4.98 -0.02 4.76 16 10 N -0.53 -11.16 4.41 -237.52 -1.05 -12.21 16 11 C 0.13 2.45 5.34 -4.97 -0.03 2.43 16 12 C -0.15 -2.58 5.42 -102.66 -0.56 -3.14 16 13 C 0.01 0.20 11.89 29.24 0.35 0.54 16 14 O -0.20 -3.05 10.58 3.90 0.04 -3.01 16 15 C 0.05 0.71 7.42 -38.47 -0.29 0.42 16 16 C -0.11 -1.32 10.07 -39.46 -0.40 -1.72 16 17 C -0.10 -1.07 10.01 -39.54 -0.40 -1.46 16 18 C -0.14 -1.61 9.98 -39.94 -0.40 -2.01 16 19 C -0.07 -0.96 8.29 -39.69 -0.33 -1.29 16 20 C -0.12 -1.84 5.33 -105.16 -0.56 -2.40 16 21 C 0.08 1.42 4.34 -3.82 -0.02 1.40 16 22 C -0.13 -2.38 5.56 -90.62 -0.50 -2.89 16 23 C -0.18 -2.76 10.18 -26.69 -0.27 -3.03 16 24 C -0.19 -2.79 10.25 -26.69 -0.27 -3.06 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H -0.01 -0.31 8.00 -51.93 -0.42 -0.72 16 27 H 0.04 1.07 6.04 -51.92 -0.31 0.76 16 28 H 0.09 1.85 7.31 -51.93 -0.38 1.47 16 29 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.21 2.59 8.06 -52.49 -0.42 2.16 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.70 7.16 -52.49 -0.38 1.32 16 35 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 36 H 0.07 1.30 3.63 -51.93 -0.19 1.11 16 37 H 0.12 2.40 6.47 -51.93 -0.34 2.06 16 38 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -30.22 337.36 -10.06 -40.28 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.77 Total: 3.17 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -4.08 Total: -24.04 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.31 Total: -37.78 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.22 -10.06 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.638 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds