Wall clock time and date at job start Tue Mar 31 2020 06:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47139 * 299.99996 * 3 2 1 6 6 H 1.48498 * 109.47086 * 59.99604 * 3 2 1 7 7 C 1.37879 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99821 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47027 * 184.80912 * 9 7 2 11 11 C 1.46899 * 111.00098 * 284.37140 * 10 9 7 12 12 C 1.50704 * 109.47565 * 169.99795 * 11 10 9 13 13 C 1.33990 * 126.90785 * 259.98013 * 12 11 10 14 14 O 1.34451 * 110.15569 * 180.02562 * 13 12 11 15 15 C 1.34810 * 110.88527 * 0.02562 * 14 13 12 16 16 C 1.38943 * 133.49453 * 180.02562 * 15 14 13 17 17 C 1.37852 * 119.81750 * 179.97438 * 16 15 14 18 18 C 1.38738 * 120.68573 * 0.02643 * 17 16 15 19 19 C 1.36744 * 120.41807 * 359.97438 * 18 17 16 20 20 C 1.39403 * 119.71651 * 0.02562 * 19 18 17 21 21 C 1.46904 * 111.00124 * 160.42099 * 10 9 7 22 22 C 1.52999 * 109.46855 * 293.25793 * 21 10 9 23 23 C 1.52995 * 117.50241 * 244.83860 * 22 21 10 24 24 C 1.53001 * 117.49585 * 176.17708 * 22 21 10 25 25 H 0.96993 * 119.99798 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47583 * 64.80717 * 9 7 2 27 27 H 1.09009 * 109.47145 * 304.80468 * 9 7 2 28 28 H 1.09006 * 109.46759 * 50.00112 * 11 10 9 29 29 H 1.08996 * 109.47366 * 290.00364 * 11 10 9 30 30 H 1.08001 * 124.92378 * 359.97438 * 13 12 11 31 31 H 1.07994 * 120.09352 * 0.22565 * 16 15 14 32 32 H 1.08002 * 119.65487 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.79281 * 179.97438 * 18 17 16 34 34 H 1.07998 * 120.14296 * 180.02562 * 19 18 17 35 35 H 1.08990 * 109.47295 * 53.26419 * 21 10 9 36 36 H 1.09002 * 109.46887 * 173.26427 * 21 10 9 37 37 H 1.08997 * 115.55058 * 30.51346 * 22 21 10 38 38 H 1.09000 * 117.50089 * 0.02562 * 23 22 21 39 39 H 1.09001 * 117.50052 * 145.02398 * 23 22 21 40 40 H 1.09001 * 117.49796 * 214.98332 * 24 22 21 41 41 H 1.08996 * 117.49890 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2014 -3.6132 0.1173 11 6 2.8974 -3.8470 -1.1551 12 6 4.0275 -4.8201 -0.9382 13 6 5.3267 -4.5254 -0.7945 14 8 6.0406 -5.6513 -0.6198 15 6 5.2404 -6.7360 -0.6419 16 6 5.4738 -8.0994 -0.5107 17 6 4.4197 -8.9850 -0.5796 18 6 3.1245 -8.5299 -0.7796 19 6 2.8733 -7.1922 -0.9111 20 6 3.9265 -6.2814 -0.8442 21 6 1.5277 -4.8336 0.5807 22 6 1.0448 -4.6346 2.0188 23 6 1.6762 -5.5095 3.1036 24 6 0.2353 -5.7664 2.6551 25 1 -0.4849 0.8400 -0.0004 26 1 0.6910 -2.5953 -0.9295 27 1 0.5611 -2.5203 0.8442 28 1 3.2965 -2.9043 -1.5295 29 1 2.1973 -4.2593 -1.8817 30 1 5.7406 -3.5281 -0.8165 31 1 6.4778 -8.4640 -0.3512 32 1 4.6041 -10.0442 -0.4769 33 1 2.3094 -9.2365 -0.8316 34 1 1.8632 -6.8427 -1.0662 35 1 0.6741 -5.0443 -0.0634 36 1 2.2256 -5.6700 0.5443 37 1 0.7788 -3.6125 2.2883 38 1 2.4360 -6.2266 2.7928 39 1 1.8252 -5.0631 4.0867 40 1 -0.5630 -5.4888 3.3434 41 1 0.0472 -6.6528 2.0493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:09 Heat of formation + Delta-G solvation = 44.899141 kcal Electronic energy + Delta-G solvation = -22409.580273 eV Core-core repulsion = 19256.138816 eV Total energy + Delta-G solvation = -3153.441458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.39498 -39.40724 -38.70607 -37.12783 -34.90374 -33.62982 -31.43764 -30.59115 -29.49738 -28.02457 -25.69791 -24.23933 -23.38893 -23.18295 -22.99217 -21.31040 -20.45126 -18.63108 -18.15480 -18.01824 -17.14842 -16.74704 -16.63701 -16.62918 -15.80822 -15.41019 -15.07742 -15.00051 -14.67393 -14.30742 -14.12330 -13.87348 -13.63049 -13.21156 -13.10084 -12.95127 -12.62831 -12.59431 -12.39362 -12.33132 -12.25557 -11.75275 -11.65021 -11.33820 -11.16224 -10.88713 -10.79234 -10.56742 -9.56304 -9.09811 -8.95970 -8.17701 -6.27315 0.01094 0.43427 1.39123 1.41420 1.42314 1.55366 1.91184 2.41482 2.78831 2.90896 3.14285 3.41898 3.54987 3.67916 3.90996 3.95036 4.04534 4.16703 4.19907 4.30668 4.48298 4.48961 4.56302 4.56821 4.70441 4.71897 4.75233 4.79855 4.83207 4.99279 5.02870 5.17339 5.25914 5.27028 5.31974 5.40302 5.40697 5.48666 5.55269 5.68624 5.77750 6.09764 6.24591 6.38314 6.62972 6.88069 7.41932 8.93074 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.005120 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.025857 B = 5467.093372 C = 6524.268512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.206 3.794 10 N -0.531 5.531 11 C 0.137 3.863 12 C -0.182 4.182 13 C 0.021 3.979 14 O -0.202 6.202 15 C 0.024 3.976 16 C -0.111 4.111 17 C -0.089 4.089 18 C -0.130 4.130 19 C -0.093 4.093 20 C -0.139 4.139 21 C 0.084 3.916 22 C -0.169 4.169 23 C -0.164 4.164 24 C -0.164 4.164 25 H 0.263 0.737 26 H -0.042 1.042 27 H 0.015 0.985 28 H 0.079 0.921 29 H 0.024 0.976 30 H 0.229 0.771 31 H 0.153 0.847 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.012 0.988 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.374 -18.291 0.031 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.255 5.255 11 C 0.010 3.990 12 C -0.184 4.184 13 C -0.045 4.045 14 O -0.103 6.103 15 C -0.023 4.023 16 C -0.129 4.129 17 C -0.107 4.107 18 C -0.148 4.148 19 C -0.111 4.111 20 C -0.140 4.140 21 C -0.043 4.043 22 C -0.187 4.187 23 C -0.201 4.201 24 C -0.201 4.201 25 H 0.072 0.928 26 H -0.024 1.024 27 H 0.033 0.967 28 H 0.098 0.902 29 H 0.042 0.958 30 H 0.245 0.755 31 H 0.171 0.829 32 H 0.189 0.811 33 H 0.173 0.827 34 H 0.135 0.865 35 H 0.030 0.970 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.858 -18.067 0.411 20.126 hybrid contribution -0.931 1.451 -0.697 1.860 sum 7.926 -16.616 -0.286 18.412 Atomic orbital electron populations 1.70096 1.07720 1.27680 1.52151 1.25876 0.95671 1.03022 0.94977 0.85372 0.79151 0.78780 0.77548 1.18512 1.20518 1.20722 1.21489 0.93646 0.90913 1.49402 0.91850 1.19452 0.90321 0.88792 0.93377 1.62066 1.30250 1.05186 1.28044 1.20133 0.92316 0.96339 0.90245 1.21117 0.95451 0.92388 1.09438 1.24162 0.90141 0.89941 1.00212 1.83983 1.37069 1.13599 1.75685 1.20105 0.88309 0.89628 1.04225 1.20352 1.02150 0.86396 1.04005 1.21359 0.90927 1.00825 0.97593 1.21135 0.98546 0.94497 1.00652 1.20509 0.97492 0.93362 0.99736 1.20040 0.94944 0.92980 1.06010 1.21887 0.95943 0.93465 0.93047 1.22229 1.06019 0.96099 0.94388 1.22944 0.96107 1.02364 0.98666 1.23026 0.94478 0.99335 1.03296 0.92821 1.02449 0.96721 0.90237 0.95806 0.75451 0.82907 0.81080 0.82711 0.86463 0.96983 0.88977 0.90416 0.88776 0.88616 0.88070 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.65 13.29 21.45 0.28 -56.37 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.52 -29.31 8.61 25.60 0.22 -29.09 16 8 H 0.06 3.51 7.65 -2.91 -0.02 3.49 16 9 C 0.21 11.17 4.58 85.56 0.39 11.56 16 10 N -0.53 -23.81 4.41 -905.37 -3.99 -27.80 16 11 C 0.14 5.51 5.34 85.56 0.46 5.97 16 12 C -0.18 -6.28 5.42 -18.60 -0.10 -6.38 16 13 C 0.02 0.63 11.89 66.85 0.79 1.43 16 14 O -0.20 -6.05 10.58 -8.96 -0.09 -6.15 16 15 C 0.02 0.69 7.42 22.99 0.17 0.86 16 16 C -0.11 -2.31 10.07 22.35 0.23 -2.09 16 17 C -0.09 -1.49 10.01 22.30 0.22 -1.27 16 18 C -0.13 -2.53 9.98 22.04 0.22 -2.31 16 19 C -0.09 -2.48 8.29 22.20 0.18 -2.29 16 20 C -0.14 -4.32 5.33 -20.21 -0.11 -4.43 16 21 C 0.08 3.26 4.34 86.30 0.37 3.63 16 22 C -0.17 -6.27 5.56 -10.79 -0.06 -6.33 16 23 C -0.16 -4.89 10.18 30.62 0.31 -4.58 16 24 C -0.16 -4.62 10.25 30.62 0.31 -4.31 16 25 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 26 H -0.04 -2.47 8.00 -2.39 -0.02 -2.49 16 27 H 0.01 0.86 6.04 -2.38 -0.01 0.85 16 28 H 0.08 3.33 7.31 -2.38 -0.02 3.31 16 29 H 0.02 0.97 8.12 -2.39 -0.02 0.95 16 30 H 0.23 5.64 8.06 -2.91 -0.02 5.61 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 33 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.12 3.21 7.16 -2.91 -0.02 3.19 16 35 H 0.01 0.48 8.11 -2.39 -0.02 0.46 16 36 H 0.09 3.25 3.63 -2.39 -0.01 3.24 16 37 H 0.08 3.47 6.47 -2.39 -0.02 3.46 16 38 H 0.09 2.68 8.03 -2.39 -0.02 2.66 16 39 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -68.26 337.36 3.32 -64.93 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.02 Total: 18.01 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 4.08 Total: -39.05 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -3.71 Total: -84.17 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.09 Total: -6.15 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.26 3.32 -64.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.830 kcal (2) G-P(sol) polarization free energy of solvation -68.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds