Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99798 * 2 1 4 4 C 1.53008 * 109.46673 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46783 * 66.16929 * 4 3 2 6 6 C 1.46906 * 110.99934 * 287.05961 * 5 4 3 7 7 C 1.50703 * 109.46838 * 301.55060 * 6 5 4 8 8 H 1.08001 * 120.00096 * 4.45454 * 7 6 5 9 9 C 1.37872 * 119.99714 * 184.44763 * 7 6 5 10 10 N 1.31516 * 120.00140 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00073 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47058 * 89.99877 * 11 9 7 13 13 H 1.48507 * 109.46954 * 209.99602 * 11 9 7 14 14 H 1.48494 * 109.47346 * 329.99823 * 11 9 7 15 15 C 1.46898 * 111.00061 * 163.10481 * 5 4 3 16 16 C 1.50693 * 109.47247 * 189.99652 * 15 5 4 17 17 C 1.38421 * 120.02460 * 90.00456 * 16 15 5 18 18 F 1.35102 * 120.00927 * 359.69521 * 17 16 15 19 19 C 1.38471 * 119.97697 * 179.97438 * 17 16 15 20 20 C 1.38209 * 120.02611 * 359.97438 * 19 17 16 21 21 C 1.38214 * 120.04974 * 0.02562 * 20 19 17 22 22 C 1.38420 * 120.02607 * 269.97705 * 16 15 5 23 23 F 1.35091 * 120.01288 * 0.02562 * 22 16 15 24 24 H 1.09004 * 109.47455 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47529 * 300.00296 * 1 2 3 26 26 H 1.08999 * 109.46868 * 60.00102 * 1 2 3 27 27 H 1.09004 * 109.47066 * 60.00606 * 3 2 1 28 28 H 1.08995 * 109.47315 * 299.99310 * 3 2 1 29 29 H 1.08993 * 109.47453 * 306.16887 * 4 3 2 30 30 H 1.08996 * 109.46861 * 186.16027 * 4 3 2 31 31 H 1.09001 * 109.47033 * 61.54929 * 6 5 4 32 32 H 1.08998 * 109.46905 * 181.55447 * 6 5 4 33 33 H 0.96998 * 120.00506 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47127 * 69.99963 * 15 5 4 35 35 H 1.08997 * 109.47142 * 309.99885 * 15 5 4 36 36 H 1.08003 * 119.98810 * 179.97438 * 19 17 16 37 37 H 1.07997 * 119.97866 * 180.02562 * 20 19 17 38 38 H 1.07990 * 119.98859 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9798 0.5879 -1.2660 6 6 3.6617 -0.8456 -1.3128 7 6 4.3247 -1.5453 -0.1544 8 1 4.8625 -0.9723 0.5865 9 6 4.2445 -2.9169 -0.0403 10 7 4.8226 -3.5276 0.9709 11 14 3.3147 -3.9081 -1.3219 12 1 4.2429 -4.3018 -2.4122 13 1 2.7482 -5.1267 -0.6900 14 1 2.2141 -3.0838 -1.8824 15 6 5.4151 0.8159 -1.4805 16 6 5.7834 0.4125 -2.8850 17 6 5.7193 1.3393 -3.9111 18 9 5.3204 2.6045 -3.6550 19 6 6.0585 0.9678 -5.2012 20 6 6.4615 -0.3278 -5.4644 21 6 6.5260 -1.2541 -4.4406 22 6 6.1868 -0.8848 -3.1498 23 9 6.2499 -1.7904 -2.1493 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8901 28 1 1.6887 1.8464 -0.8900 29 1 3.8495 0.5515 0.8304 30 1 3.9783 2.1745 0.1109 31 1 2.5820 -0.9804 -1.2490 32 1 4.0260 -1.2682 -2.2492 33 1 4.7665 -4.4926 1.0511 34 1 5.9878 0.2204 -0.7695 35 1 5.6409 1.8722 -1.3348 36 1 6.0081 1.6906 -6.0021 37 1 6.7263 -0.6166 -6.4708 38 1 6.8407 -2.2662 -4.6474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = -90.056979 kcal Electronic energy + Delta-G solvation = -23873.522157 eV Core-core repulsion = 20159.999033 eV Total energy + Delta-G solvation = -3713.523124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.64569 -48.19331 -38.68694 -37.71279 -36.03935 -32.31051 -31.58006 -29.95238 -29.11217 -27.42651 -25.80175 -24.46773 -22.63645 -22.29104 -21.32026 -19.45623 -17.63463 -17.10049 -16.69785 -16.12491 -15.74424 -15.58296 -15.37346 -15.06824 -14.75550 -14.49514 -14.02644 -13.90714 -13.81020 -13.75242 -13.21973 -12.39255 -12.28252 -12.10455 -11.72678 -11.64351 -11.57832 -11.21215 -11.13872 -10.93669 -10.73077 -10.58403 -10.52231 -9.88292 -9.81865 -9.35152 -8.98503 -8.54802 -8.39506 -8.32233 -7.14817 -5.91215 -3.84679 1.28590 1.32773 3.38970 3.45539 3.52805 3.65066 4.31869 4.42194 4.58118 4.80229 4.85005 4.97770 5.00888 5.25654 5.43920 5.46491 5.59473 5.70495 5.78845 5.85220 5.91857 6.01051 6.04068 6.06629 6.23710 6.27138 6.31724 6.33039 6.41540 6.62119 6.78675 7.03094 7.13436 7.48460 7.73602 7.81488 8.12631 8.15830 8.61845 9.09186 9.74978 11.22762 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013610 B = 0.008551 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.776013 B = 3273.668727 C = 4527.857205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.073 3.927 4 C 0.055 3.945 5 N -0.526 5.526 6 C 0.145 3.855 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.080 3.920 10 N -0.906 5.906 11 Si 0.867 3.133 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.264 1.264 15 C 0.094 3.906 16 C -0.136 4.136 17 C 0.140 3.860 18 F -0.132 7.132 19 C -0.181 4.181 20 C -0.070 4.070 21 C -0.180 4.180 22 C 0.150 3.850 23 F -0.095 7.095 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 9.389 -9.829 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.275 6.275 3 C -0.004 4.004 4 C -0.074 4.074 5 N -0.250 5.250 6 C 0.019 3.981 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.121 4.121 10 N -0.545 5.545 11 Si 0.695 3.305 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.189 1.189 15 C -0.034 4.034 16 C -0.139 4.139 17 C 0.120 3.880 18 F -0.110 7.110 19 C -0.200 4.200 20 C -0.088 4.088 21 C -0.199 4.199 22 C 0.130 3.870 23 F -0.072 7.072 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.473 9.300 -10.061 13.709 hybrid contribution -0.338 -0.878 0.221 0.966 sum -0.811 8.423 -9.840 12.978 Atomic orbital electron populations 1.22663 0.83381 1.02060 0.98746 1.88295 1.17526 1.26916 1.94797 1.22467 0.94298 0.85018 0.98590 1.22047 0.92927 0.98645 0.93742 1.62612 1.12501 1.17786 1.32062 1.20510 0.98749 0.82902 0.95955 1.21403 1.33051 0.92293 1.09056 0.91206 1.24740 0.94741 0.97670 0.94928 1.69915 1.45003 1.09078 1.30545 0.86979 0.81117 0.79934 0.82491 1.20486 1.21745 1.18856 1.20763 0.91867 1.00013 0.90736 1.19938 1.03736 0.92572 0.97629 1.17177 0.98512 0.79425 0.92932 1.91480 1.88069 1.36617 1.94861 1.21026 1.05699 0.98050 0.95211 1.20690 0.97468 0.91827 0.98856 1.21231 1.05565 1.01522 0.91606 1.17468 0.97287 0.86558 0.85728 1.91786 1.92604 1.64540 1.58319 0.90318 0.95008 0.94956 0.94193 0.93666 0.91393 0.91558 0.92250 0.96881 0.93144 0.91500 0.91255 0.84786 0.84700 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -7.29 7.69 -35.23 -0.27 -7.56 16 3 C 0.07 1.29 6.24 37.16 0.23 1.52 16 4 C 0.05 1.05 5.35 -3.82 -0.02 1.03 16 5 N -0.53 -11.16 4.65 -237.51 -1.10 -12.27 16 6 C 0.14 3.57 3.24 -4.97 -0.02 3.56 16 7 C -0.52 -14.43 6.33 -34.44 -0.22 -14.65 16 8 H 0.07 2.11 6.19 -52.49 -0.33 1.78 16 9 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 10 N -0.91 -28.10 13.96 55.43 0.77 -27.33 16 11 Si 0.87 22.51 27.38 -169.99 -4.65 17.86 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 14 H -0.26 -6.71 6.67 56.52 0.38 -6.33 16 15 C 0.09 1.86 4.62 -4.98 -0.02 1.83 16 16 C -0.14 -2.53 4.90 -104.49 -0.51 -3.05 16 17 C 0.14 2.25 7.24 -39.43 -0.29 1.97 16 18 F -0.13 -2.13 16.48 2.25 0.04 -2.09 16 19 C -0.18 -2.38 10.02 -39.51 -0.40 -2.78 16 20 C -0.07 -0.87 10.04 -39.60 -0.40 -1.27 16 21 C -0.18 -2.76 10.03 -39.50 -0.40 -3.15 16 22 C 0.15 2.87 5.90 -39.43 -0.23 2.63 16 23 F -0.09 -2.19 13.65 2.25 0.03 -2.16 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.52 5.96 -51.93 -0.31 1.21 16 30 H 0.07 1.09 7.79 -51.93 -0.40 0.68 16 31 H 0.06 1.55 4.81 -51.93 -0.25 1.30 16 32 H 0.01 0.34 4.62 -51.93 -0.24 0.10 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.07 1.49 6.26 -51.93 -0.33 1.16 16 35 H 0.07 1.22 7.35 -51.93 -0.38 0.83 16 36 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -32.21 311.20 -6.53 -38.73 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.78 Total: -1.33 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.25 Total: -8.55 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.33 Total: -39.60 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.27 Total: -7.56 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.07 Total: -4.25 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.65 Total: 17.86 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.21 -6.53 -38.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.325 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds