Wall clock time and date at job start Tue Mar 31 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99798 * 2 1 4 4 C 1.53008 * 109.46673 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46783 * 66.16929 * 4 3 2 6 6 C 1.46906 * 110.99934 * 287.05961 * 5 4 3 7 7 C 1.50703 * 109.46838 * 301.55060 * 6 5 4 8 8 H 1.08001 * 120.00096 * 4.45454 * 7 6 5 9 9 C 1.37872 * 119.99714 * 184.44763 * 7 6 5 10 10 N 1.31516 * 120.00140 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00073 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47058 * 89.99877 * 11 9 7 13 13 H 1.48507 * 109.46954 * 209.99602 * 11 9 7 14 14 H 1.48494 * 109.47346 * 329.99823 * 11 9 7 15 15 C 1.46898 * 111.00061 * 163.10481 * 5 4 3 16 16 C 1.50693 * 109.47247 * 189.99652 * 15 5 4 17 17 C 1.38421 * 120.02460 * 90.00456 * 16 15 5 18 18 F 1.35102 * 120.00927 * 359.69521 * 17 16 15 19 19 C 1.38471 * 119.97697 * 179.97438 * 17 16 15 20 20 C 1.38209 * 120.02611 * 359.97438 * 19 17 16 21 21 C 1.38214 * 120.04974 * 0.02562 * 20 19 17 22 22 C 1.38420 * 120.02607 * 269.97705 * 16 15 5 23 23 F 1.35091 * 120.01288 * 0.02562 * 22 16 15 24 24 H 1.09004 * 109.47455 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47529 * 300.00296 * 1 2 3 26 26 H 1.08999 * 109.46868 * 60.00102 * 1 2 3 27 27 H 1.09004 * 109.47066 * 60.00606 * 3 2 1 28 28 H 1.08995 * 109.47315 * 299.99310 * 3 2 1 29 29 H 1.08993 * 109.47453 * 306.16887 * 4 3 2 30 30 H 1.08996 * 109.46861 * 186.16027 * 4 3 2 31 31 H 1.09001 * 109.47033 * 61.54929 * 6 5 4 32 32 H 1.08998 * 109.46905 * 181.55447 * 6 5 4 33 33 H 0.96998 * 120.00506 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47127 * 69.99963 * 15 5 4 35 35 H 1.08997 * 109.47142 * 309.99885 * 15 5 4 36 36 H 1.08003 * 119.98810 * 179.97438 * 19 17 16 37 37 H 1.07997 * 119.97866 * 180.02562 * 20 19 17 38 38 H 1.07990 * 119.98859 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9798 0.5879 -1.2660 6 6 3.6617 -0.8456 -1.3128 7 6 4.3247 -1.5453 -0.1544 8 1 4.8625 -0.9723 0.5865 9 6 4.2445 -2.9169 -0.0403 10 7 4.8226 -3.5276 0.9709 11 14 3.3147 -3.9081 -1.3219 12 1 4.2429 -4.3018 -2.4122 13 1 2.7482 -5.1267 -0.6900 14 1 2.2141 -3.0838 -1.8824 15 6 5.4151 0.8159 -1.4805 16 6 5.7834 0.4125 -2.8850 17 6 5.7193 1.3393 -3.9111 18 9 5.3204 2.6045 -3.6550 19 6 6.0585 0.9678 -5.2012 20 6 6.4615 -0.3278 -5.4644 21 6 6.5260 -1.2541 -4.4406 22 6 6.1868 -0.8848 -3.1498 23 9 6.2499 -1.7904 -2.1493 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8901 28 1 1.6887 1.8464 -0.8900 29 1 3.8495 0.5515 0.8304 30 1 3.9783 2.1745 0.1109 31 1 2.5820 -0.9804 -1.2490 32 1 4.0260 -1.2682 -2.2492 33 1 4.7665 -4.4926 1.0511 34 1 5.9878 0.2204 -0.7695 35 1 5.6409 1.8722 -1.3348 36 1 6.0081 1.6906 -6.0021 37 1 6.7263 -0.6166 -6.4708 38 1 6.8407 -2.2662 -4.6474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:18 Heat of formation + Delta-G solvation = -112.288822 kcal Electronic energy + Delta-G solvation = -23874.486202 eV Core-core repulsion = 20159.999033 eV Total energy + Delta-G solvation = -3714.487169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.87126 -49.74176 -40.03486 -39.13751 -37.59240 -34.47010 -32.95895 -31.14892 -30.77586 -29.16229 -27.09737 -26.13209 -24.27066 -23.62290 -22.65071 -21.23649 -19.13706 -18.87106 -18.13264 -17.61223 -17.16998 -16.92140 -16.75091 -16.40121 -16.27469 -16.14925 -15.66174 -15.57525 -15.31497 -15.18554 -14.53492 -14.40387 -13.67801 -13.53092 -13.28354 -13.08906 -12.99828 -12.81985 -12.64332 -12.47830 -12.39697 -12.31476 -11.98973 -11.78164 -11.59614 -11.48633 -10.67839 -10.31720 -9.81638 -9.61322 -8.96465 -8.18676 -6.13865 0.08966 0.11136 1.31299 1.32279 1.44576 2.40941 2.46249 3.08289 3.09693 3.21444 3.35456 3.59362 3.69960 3.83110 4.01719 4.25243 4.32108 4.40293 4.45988 4.55281 4.58731 4.68219 4.70997 4.77596 4.87097 4.97023 5.06938 5.10019 5.13823 5.16912 5.22339 5.27704 5.48320 5.65659 5.92287 6.14900 6.35376 6.41337 6.54108 6.84280 7.48221 8.98972 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013610 B = 0.008551 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.776013 B = 3273.668727 C = 4527.857205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.076 3.924 4 C 0.051 3.949 5 N -0.521 5.521 6 C 0.163 3.837 7 C -0.497 4.497 8 H 0.030 0.970 9 C 0.024 3.976 10 N -0.954 5.954 11 Si 0.923 3.077 12 H -0.270 1.270 13 H -0.288 1.288 14 H -0.253 1.253 15 C 0.099 3.901 16 C -0.161 4.161 17 C 0.130 3.870 18 F -0.134 7.134 19 C -0.160 4.160 20 C -0.049 4.049 21 C -0.178 4.178 22 C 0.105 3.895 23 F -0.133 7.133 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.009 0.991 33 H 0.258 0.742 34 H 0.027 0.973 35 H 0.089 0.911 36 H 0.175 0.825 37 H 0.186 0.814 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 10.887 -13.429 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.001 4.001 4 C -0.077 4.077 5 N -0.244 5.244 6 C 0.035 3.965 7 C -0.536 4.536 8 H 0.048 0.952 9 C -0.173 4.173 10 N -0.596 5.596 11 Si 0.748 3.252 12 H -0.196 1.196 13 H -0.214 1.214 14 H -0.177 1.177 15 C -0.029 4.029 16 C -0.163 4.163 17 C 0.110 3.890 18 F -0.112 7.112 19 C -0.179 4.179 20 C -0.067 4.067 21 C -0.197 4.197 22 C 0.085 3.915 23 F -0.112 7.112 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.107 0.893 36 H 0.192 0.808 37 H 0.203 0.797 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.376 10.828 -13.674 17.496 hybrid contribution 0.007 -1.192 1.304 1.767 sum -1.369 9.635 -12.370 15.739 Atomic orbital electron populations 1.22832 0.81065 1.02643 1.00652 1.88199 1.20256 1.28638 1.95172 1.22521 0.92486 0.84508 1.00548 1.22178 0.95008 0.99104 0.91376 1.62630 1.13489 1.15404 1.32827 1.20192 0.97564 0.84718 0.93977 1.21505 1.31331 0.92022 1.08700 0.95157 1.25482 0.96009 0.98933 0.96855 1.70058 1.47450 1.09268 1.32871 0.86074 0.80223 0.78571 0.80321 1.19579 1.21432 1.17703 1.20693 0.90371 1.00370 0.91475 1.19890 1.05663 0.93376 0.97401 1.17355 0.99110 0.78929 0.93597 1.91473 1.88177 1.36550 1.95005 1.21523 1.02759 0.99061 0.94549 1.21261 0.94726 0.90620 1.00100 1.21546 1.04593 1.03070 0.90511 1.17965 1.00399 0.86540 0.86548 1.91679 1.93421 1.65825 1.60237 0.90523 0.92887 0.93139 0.91495 0.92157 0.95475 0.88498 0.93015 0.97294 0.93266 0.95474 0.89266 0.80772 0.79672 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -16.29 7.69 -148.98 -1.15 -17.43 16 3 C 0.08 2.58 6.24 71.98 0.45 3.03 16 4 C 0.05 2.01 5.35 86.31 0.46 2.47 16 5 N -0.52 -22.40 4.65 -905.35 -4.21 -26.61 16 6 C 0.16 8.20 3.24 85.56 0.28 8.47 16 7 C -0.50 -29.07 6.33 25.60 0.16 -28.91 16 8 H 0.03 1.98 6.19 -2.91 -0.02 1.96 16 9 C 0.02 1.43 5.39 84.65 0.46 1.89 16 10 N -0.95 -62.10 13.96 21.45 0.30 -61.80 16 11 Si 0.92 47.41 27.38 68.60 1.88 49.29 16 12 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 13 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 14 H -0.25 -12.44 6.67 99.48 0.66 -11.77 16 15 C 0.10 4.03 4.62 85.56 0.40 4.42 16 16 C -0.16 -5.96 4.90 -19.78 -0.10 -6.06 16 17 C 0.13 3.88 7.24 22.37 0.16 4.04 16 18 F -0.13 -3.98 16.48 44.97 0.74 -3.24 16 19 C -0.16 -3.45 10.02 22.32 0.22 -3.22 16 20 C -0.05 -0.98 10.04 22.26 0.22 -0.76 16 21 C -0.18 -5.05 10.03 22.32 0.22 -4.83 16 22 C 0.11 4.06 5.90 22.37 0.13 4.19 16 23 F -0.13 -6.48 13.65 44.97 0.61 -5.87 16 24 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.03 1.28 5.96 -2.39 -0.01 1.27 16 30 H 0.10 3.12 7.79 -2.39 -0.02 3.10 16 31 H 0.05 2.73 4.81 -2.39 -0.01 2.72 16 32 H 0.01 0.47 4.62 -2.39 -0.01 0.46 16 33 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 34 H 0.03 1.31 6.26 -2.38 -0.01 1.29 16 35 H 0.09 3.17 7.35 -2.39 -0.02 3.15 16 36 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.15 3.73 8.06 -2.92 -0.02 3.70 16 Total: -1.00 -75.15 311.20 3.53 -71.63 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.03 Total: 7.32 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 4.32 Total: -13.29 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -3.91 Total: -88.41 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -1.15 Total: -17.43 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 1.35 Total: -9.11 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.88 Total: 49.29 kcal Total: -75.15 3.53 -71.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.663 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds