Wall clock time and date at job start Tue Mar 31 2020 06:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48495 * 109.46954 * 270.00236 * 3 2 1 5 5 H 1.48508 * 109.46969 * 29.99796 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.99809 * 3 2 1 7 7 C 1.38814 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00339 * 201.37428 * 7 2 1 9 9 N 1.36942 * 119.99930 * 21.37892 * 7 2 1 10 10 C 1.46503 * 120.00026 * 37.15693 * 9 7 2 11 11 C 1.50704 * 109.46689 * 90.00190 * 10 9 7 12 12 C 1.34002 * 126.90610 * 259.97276 * 11 10 9 13 13 O 1.34448 * 110.15281 * 180.02562 * 12 11 10 14 14 C 1.34814 * 110.88643 * 0.02562 * 13 12 11 15 15 C 1.38943 * 133.49015 * 180.02562 * 14 13 12 16 16 C 1.37855 * 119.81453 * 179.97438 * 15 14 13 17 17 C 1.38741 * 120.68254 * 0.02574 * 16 15 14 18 18 C 1.36737 * 120.42269 * 359.97361 * 17 16 15 19 19 C 1.39409 * 119.71191 * 0.02562 * 18 17 16 20 20 C 1.46492 * 119.99837 * 217.16222 * 9 7 2 21 21 C 1.54265 * 110.03514 * 60.87029 * 20 9 7 22 22 C 1.54964 * 104.16089 * 217.13694 * 21 20 9 23 23 C 1.54889 * 102.77745 * 37.88411 * 22 21 20 24 24 C 1.53876 * 110.03396 * 303.64874 * 20 9 7 25 25 H 0.96991 * 120.00173 * 354.95408 * 1 2 3 26 26 H 1.08998 * 109.47014 * 330.00709 * 10 9 7 27 27 H 1.08995 * 109.47328 * 210.00389 * 10 9 7 28 28 H 1.07999 * 124.91807 * 0.02562 * 12 11 10 29 29 H 1.07998 * 120.09459 * 0.22884 * 15 14 13 30 30 H 1.07999 * 119.65535 * 179.97438 * 16 15 14 31 31 H 1.08007 * 119.78760 * 179.97438 * 17 16 15 32 32 H 1.07994 * 120.14457 * 180.02562 * 18 17 16 33 33 H 1.09005 * 110.01511 * 182.26448 * 20 9 7 34 34 H 1.09002 * 110.48540 * 335.78236 * 21 20 9 35 35 H 1.09002 * 110.48518 * 98.42815 * 21 20 9 36 36 H 1.09006 * 110.72000 * 279.57109 * 22 21 20 37 37 H 1.08997 * 110.92400 * 156.29921 * 22 21 20 38 38 H 1.09003 * 110.48540 * 203.40124 * 23 22 21 39 39 H 1.09002 * 110.59834 * 80.82086 * 23 22 21 40 40 H 1.08997 * 110.03850 * 238.57292 * 24 20 9 41 41 H 1.09003 * 110.03050 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0346 -1.2342 0.3414 9 7 1.3963 -2.3475 -0.4313 10 6 0.4642 -2.2979 -1.5604 11 6 1.2198 -2.5188 -2.8455 12 6 1.6230 -1.5807 -3.7133 13 8 2.2681 -2.1514 -4.7457 14 6 2.3163 -3.4909 -4.6011 15 6 2.8549 -4.5168 -5.3680 16 6 2.7402 -5.8231 -4.9429 17 6 2.0909 -6.1266 -3.7549 18 6 1.5540 -5.1319 -2.9855 19 6 1.6602 -3.8048 -3.3992 20 6 1.6715 -3.6223 0.2360 21 6 1.2545 -3.5433 1.7191 22 6 2.3399 -4.3625 2.4622 23 6 3.6325 -3.9973 1.6910 24 6 3.1827 -3.9113 0.2179 25 1 -0.4850 0.8367 0.0739 26 1 -0.0218 -1.3227 -1.5878 27 1 -0.2896 -3.0764 -1.4438 28 1 1.4542 -0.5201 -3.5998 29 1 3.3655 -4.2910 -6.2925 30 1 3.1593 -6.6185 -5.5412 31 1 2.0090 -7.1552 -3.4358 32 1 1.0500 -5.3732 -2.0614 33 1 1.1314 -4.4279 -0.2614 34 1 1.2568 -2.5084 2.0614 35 1 0.2715 -3.9917 1.8634 36 1 2.1348 -5.4305 2.3886 37 1 2.4127 -4.0558 3.5056 38 1 4.3841 -4.7769 1.8156 39 1 4.0216 -3.0364 2.0279 40 1 3.3760 -4.8575 -0.2874 41 1 3.7115 -3.1028 -0.2869 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093563173.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:06 Heat of formation + Delta-G solvation = 40.249840 kcal Electronic energy + Delta-G solvation = -23119.214823 eV Core-core repulsion = 19965.571756 eV Total energy + Delta-G solvation = -3153.643067 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.81544 -37.74997 -37.41952 -34.66398 -32.38414 -30.80543 -30.04537 -29.02039 -27.82950 -26.68401 -25.71218 -22.87784 -22.46549 -21.76382 -19.90910 -19.46029 -19.03820 -16.80443 -16.71089 -15.97896 -15.49175 -15.35408 -15.23000 -14.72026 -14.18304 -13.76618 -13.37442 -13.36203 -12.99483 -12.64702 -12.46714 -12.12833 -11.90157 -11.69889 -11.17700 -11.07258 -10.85987 -10.78129 -10.51887 -10.43658 -10.32759 -10.25494 -10.06923 -9.87443 -9.81279 -9.54743 -9.30438 -8.52129 -8.21766 -7.54812 -6.55821 -5.85360 -3.36853 1.36096 1.75007 3.05311 3.31649 3.38181 3.40539 3.42572 4.11475 4.44481 5.00882 5.12947 5.20633 5.25038 5.40411 5.47090 5.47817 5.56890 5.61775 5.77331 5.79821 6.02030 6.11222 6.18045 6.28775 6.33721 6.35308 6.47613 6.53483 6.57011 6.62533 6.64599 6.71128 6.80339 6.85762 6.88577 6.99175 7.07756 7.18429 7.24568 7.38032 7.53160 7.80489 7.84549 8.51691 9.16115 9.78923 10.37751 11.17806 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.007562 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.612472 B = 3701.827384 C = 5096.584147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.013 3.987 3 Si 0.892 3.108 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.061 0.939 9 N -0.568 5.568 10 C 0.203 3.797 11 C -0.155 4.155 12 C -0.010 4.010 13 O -0.205 6.205 14 C 0.043 3.957 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.149 4.149 18 C -0.063 4.063 19 C -0.112 4.112 20 C 0.175 3.825 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.131 4.131 25 H 0.256 0.744 26 H 0.108 0.892 27 H 0.035 0.965 28 H 0.201 0.799 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -9.407 -4.937 11.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.187 4.187 3 Si 0.722 3.278 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.079 0.921 9 N -0.286 5.286 10 C 0.077 3.923 11 C -0.159 4.159 12 C -0.075 4.075 13 O -0.107 6.107 14 C -0.005 4.005 15 C -0.133 4.133 16 C -0.125 4.125 17 C -0.167 4.167 18 C -0.081 4.081 19 C -0.113 4.113 20 C 0.067 3.933 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.171 4.171 25 H 0.067 0.933 26 H 0.125 0.875 27 H 0.053 0.947 28 H 0.218 0.782 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.909 -9.113 -5.186 10.882 hybrid contribution 0.544 0.946 0.147 1.101 sum 3.453 -8.168 -5.039 10.199 Atomic orbital electron populations 1.69872 1.05408 1.25977 1.52040 1.25146 0.95006 0.98405 1.00159 0.86457 0.79582 0.83906 0.77885 1.21317 1.21769 1.20333 1.18938 0.94463 0.85044 1.39072 0.92123 1.43874 1.51600 1.03062 1.30054 1.19476 0.89582 1.03013 0.80230 1.22748 1.04342 0.89293 0.99554 1.23763 0.98250 0.98826 0.86700 1.83946 1.65068 1.17783 1.43901 1.19679 1.01200 0.82722 0.96885 1.19802 1.03409 0.89921 1.00147 1.20748 1.00015 0.94795 0.96902 1.20651 1.01251 0.98972 0.95803 1.20318 0.98160 0.90559 0.99035 1.20062 1.01291 0.94656 0.95303 1.21032 0.92507 0.88243 0.91476 1.22817 0.95992 1.01158 0.97012 1.22442 0.96430 0.98912 0.98352 1.22250 0.96631 1.00206 0.96426 1.22545 0.99078 1.00117 0.95332 0.93349 0.87482 0.94683 0.78221 0.85933 0.85660 0.86128 0.86015 0.93579 0.89662 0.93659 0.92914 0.92880 0.93499 0.92042 0.93885 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 11.43 55.49 0.63 -23.28 16 2 C 0.01 0.33 4.96 -17.43 -0.09 0.24 16 3 Si 0.89 20.73 29.61 -169.99 -5.03 15.70 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.23 7.74 -15.06 -0.12 -6.35 16 8 H 0.06 1.59 7.03 -52.48 -0.37 1.23 16 9 N -0.57 -13.15 2.37 -165.75 -0.39 -13.54 16 10 C 0.20 4.57 5.81 -5.19 -0.03 4.54 16 11 C -0.16 -3.21 5.94 -102.66 -0.61 -3.82 16 12 C -0.01 -0.21 11.89 29.24 0.35 0.14 16 13 O -0.21 -3.94 10.58 3.90 0.04 -3.90 16 14 C 0.04 0.79 7.42 -38.48 -0.29 0.50 16 15 C -0.11 -1.71 10.07 -39.46 -0.40 -2.11 16 16 C -0.11 -1.40 10.01 -39.54 -0.40 -1.79 16 17 C -0.15 -2.06 9.98 -39.94 -0.40 -2.46 16 18 C -0.06 -1.04 10.05 -39.69 -0.40 -1.44 16 19 C -0.11 -2.13 6.38 -105.17 -0.67 -2.80 16 20 C 0.17 3.55 3.41 -66.82 -0.23 3.32 16 21 C -0.13 -2.56 6.42 -25.03 -0.16 -2.72 16 22 C -0.12 -2.03 6.91 -24.70 -0.17 -2.20 16 23 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 24 C -0.13 -2.49 6.15 -25.61 -0.16 -2.65 16 25 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 26 H 0.11 2.67 5.48 -51.93 -0.28 2.38 16 27 H 0.03 0.76 7.95 -51.93 -0.41 0.35 16 28 H 0.20 3.64 8.06 -52.49 -0.42 3.22 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.12 1.94 6.68 -52.49 -0.35 1.59 16 33 H 0.05 0.90 6.47 -51.93 -0.34 0.56 16 34 H 0.08 1.96 7.15 -51.93 -0.37 1.59 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.50 6.81 -51.93 -0.35 1.15 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -27.29 332.26 -9.51 -36.80 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.84 Total: 4.97 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -3.93 Total: -21.76 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.24 Total: -36.82 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.29 -9.51 -36.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563173.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.052 kcal (2) G-P(sol) polarization free energy of solvation -27.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds