Wall clock time and date at job start Tue Mar 31 2020 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48495 * 109.46954 * 270.00236 * 3 2 1 5 5 H 1.48508 * 109.46969 * 29.99796 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.99809 * 3 2 1 7 7 C 1.38814 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00339 * 201.37428 * 7 2 1 9 9 N 1.36942 * 119.99930 * 21.37892 * 7 2 1 10 10 C 1.46503 * 120.00026 * 37.15693 * 9 7 2 11 11 C 1.50704 * 109.46689 * 90.00190 * 10 9 7 12 12 C 1.34002 * 126.90610 * 259.97276 * 11 10 9 13 13 O 1.34448 * 110.15281 * 180.02562 * 12 11 10 14 14 C 1.34814 * 110.88643 * 0.02562 * 13 12 11 15 15 C 1.38943 * 133.49015 * 180.02562 * 14 13 12 16 16 C 1.37855 * 119.81453 * 179.97438 * 15 14 13 17 17 C 1.38741 * 120.68254 * 0.02574 * 16 15 14 18 18 C 1.36737 * 120.42269 * 359.97361 * 17 16 15 19 19 C 1.39409 * 119.71191 * 0.02562 * 18 17 16 20 20 C 1.46492 * 119.99837 * 217.16222 * 9 7 2 21 21 C 1.54265 * 110.03514 * 60.87029 * 20 9 7 22 22 C 1.54964 * 104.16089 * 217.13694 * 21 20 9 23 23 C 1.54889 * 102.77745 * 37.88411 * 22 21 20 24 24 C 1.53876 * 110.03396 * 303.64874 * 20 9 7 25 25 H 0.96991 * 120.00173 * 354.95408 * 1 2 3 26 26 H 1.08998 * 109.47014 * 330.00709 * 10 9 7 27 27 H 1.08995 * 109.47328 * 210.00389 * 10 9 7 28 28 H 1.07999 * 124.91807 * 0.02562 * 12 11 10 29 29 H 1.07998 * 120.09459 * 0.22884 * 15 14 13 30 30 H 1.07999 * 119.65535 * 179.97438 * 16 15 14 31 31 H 1.08007 * 119.78760 * 179.97438 * 17 16 15 32 32 H 1.07994 * 120.14457 * 180.02562 * 18 17 16 33 33 H 1.09005 * 110.01511 * 182.26448 * 20 9 7 34 34 H 1.09002 * 110.48540 * 335.78236 * 21 20 9 35 35 H 1.09002 * 110.48518 * 98.42815 * 21 20 9 36 36 H 1.09006 * 110.72000 * 279.57109 * 22 21 20 37 37 H 1.08997 * 110.92400 * 156.29921 * 22 21 20 38 38 H 1.09003 * 110.48540 * 203.40124 * 23 22 21 39 39 H 1.09002 * 110.59834 * 80.82086 * 23 22 21 40 40 H 1.08997 * 110.03850 * 238.57292 * 24 20 9 41 41 H 1.09003 * 110.03050 * 0.02562 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0346 -1.2342 0.3414 9 7 1.3963 -2.3475 -0.4313 10 6 0.4642 -2.2979 -1.5604 11 6 1.2198 -2.5188 -2.8455 12 6 1.6230 -1.5807 -3.7133 13 8 2.2681 -2.1514 -4.7457 14 6 2.3163 -3.4909 -4.6011 15 6 2.8549 -4.5168 -5.3680 16 6 2.7402 -5.8231 -4.9429 17 6 2.0909 -6.1266 -3.7549 18 6 1.5540 -5.1319 -2.9855 19 6 1.6602 -3.8048 -3.3992 20 6 1.6715 -3.6223 0.2360 21 6 1.2545 -3.5433 1.7191 22 6 2.3399 -4.3625 2.4622 23 6 3.6325 -3.9973 1.6910 24 6 3.1827 -3.9113 0.2179 25 1 -0.4850 0.8367 0.0739 26 1 -0.0218 -1.3227 -1.5878 27 1 -0.2896 -3.0764 -1.4438 28 1 1.4542 -0.5201 -3.5998 29 1 3.3655 -4.2910 -6.2925 30 1 3.1593 -6.6185 -5.5412 31 1 2.0090 -7.1552 -3.4358 32 1 1.0500 -5.3732 -2.0614 33 1 1.1314 -4.4279 -0.2614 34 1 1.2568 -2.5084 2.0614 35 1 0.2715 -3.9917 1.8634 36 1 2.1348 -5.4305 2.3886 37 1 2.4127 -4.0558 3.5056 38 1 4.3841 -4.7769 1.8156 39 1 4.0216 -3.0364 2.0279 40 1 3.3760 -4.8575 -0.2874 41 1 3.7115 -3.1028 -0.2869 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093563173.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:04 Heat of formation + Delta-G solvation = 28.508663 kcal Electronic energy + Delta-G solvation = -23119.723959 eV Core-core repulsion = 19965.571756 eV Total energy + Delta-G solvation = -3154.152202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.21591 -39.35322 -38.64503 -36.33917 -34.02651 -32.54343 -31.29223 -30.35526 -29.34746 -28.26912 -27.56368 -24.31290 -24.05835 -23.03890 -21.33821 -20.91755 -20.74792 -18.39650 -18.05829 -17.63680 -17.02689 -16.89393 -16.54238 -16.29374 -15.92532 -15.11778 -14.96639 -14.66249 -14.59930 -14.16814 -13.95074 -13.70611 -13.15439 -13.10287 -12.87157 -12.78929 -12.59827 -12.29839 -12.22578 -11.96166 -11.86716 -11.74377 -11.72545 -11.50487 -11.33660 -11.16289 -10.72561 -10.48487 -9.47711 -8.94894 -8.45657 -7.82265 -5.36472 0.10645 0.51688 1.41609 1.46804 1.52587 1.58140 2.00974 2.50947 2.88391 3.25849 3.70045 3.75057 3.86223 3.98810 4.03594 4.15886 4.23786 4.33528 4.42096 4.55981 4.66998 4.72109 4.73769 4.78335 4.92279 4.95393 4.97826 5.00809 5.15365 5.20325 5.25146 5.31536 5.41662 5.44562 5.52076 5.57705 5.64023 5.69006 5.69984 5.71649 5.84881 5.89212 6.36100 6.55121 7.21164 7.91363 8.44859 9.17839 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.007562 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.612472 B = 3701.827384 C = 5096.584147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.027 4.027 3 Si 0.941 3.059 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.048 0.952 9 N -0.578 5.578 10 C 0.213 3.787 11 C -0.174 4.174 12 C -0.019 4.019 13 O -0.212 6.212 14 C 0.017 3.983 15 C -0.118 4.118 16 C -0.090 4.090 17 C -0.135 4.135 18 C -0.081 4.081 19 C -0.137 4.137 20 C 0.169 3.831 21 C -0.130 4.130 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.122 4.122 25 H 0.252 0.748 26 H 0.079 0.921 27 H 0.032 0.968 28 H 0.203 0.797 29 H 0.148 0.852 30 H 0.172 0.828 31 H 0.158 0.842 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.060 0.940 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -12.563 -5.682 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.224 4.224 3 Si 0.770 3.230 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.065 0.935 9 N -0.297 5.297 10 C 0.086 3.914 11 C -0.178 4.178 12 C -0.084 4.084 13 O -0.114 6.114 14 C -0.030 4.030 15 C -0.137 4.137 16 C -0.108 4.108 17 C -0.153 4.153 18 C -0.099 4.099 19 C -0.138 4.138 20 C 0.062 3.938 21 C -0.169 4.169 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.162 4.162 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.220 0.780 29 H 0.166 0.834 30 H 0.189 0.811 31 H 0.175 0.825 32 H 0.139 0.861 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.490 -12.289 -5.936 14.367 hybrid contribution 0.069 1.754 0.305 1.782 sum 4.559 -10.535 -5.631 12.786 Atomic orbital electron populations 1.69983 1.06359 1.26049 1.53658 1.25616 0.95528 1.00528 1.00765 0.85679 0.78473 0.81127 0.77672 1.21136 1.22054 1.20244 1.18934 0.93871 0.86161 1.38142 0.93458 1.43991 1.51394 1.03516 1.30785 1.19172 0.89644 1.01256 0.81310 1.22557 1.04978 0.91155 0.99115 1.23807 0.98516 0.99023 0.87071 1.83910 1.65170 1.18792 1.43564 1.20245 1.02450 0.82622 0.97696 1.20306 1.02868 0.89792 1.00712 1.21331 0.97948 0.95009 0.96497 1.21124 0.99047 0.99962 0.95187 1.20493 0.99351 0.90201 0.99891 1.20163 1.02648 0.94978 0.96034 1.21214 0.93728 0.87168 0.91651 1.22720 0.97667 0.99462 0.97067 1.22393 0.94313 0.99795 0.98368 1.22229 0.97657 1.00471 0.94763 1.22411 0.97398 0.99631 0.96724 0.93819 0.90302 0.94967 0.78006 0.83385 0.81076 0.82455 0.86128 0.92739 0.93717 0.93281 0.90194 0.91683 0.90428 0.93735 0.92100 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.47 11.43 21.65 0.25 -51.22 16 2 C -0.03 -1.46 4.96 84.86 0.42 -1.04 16 3 Si 0.94 44.05 29.61 68.60 2.03 46.08 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.24 -12.74 7.74 84.03 0.65 -12.09 16 8 H 0.05 2.60 7.03 -2.91 -0.02 2.58 16 9 N -0.58 -27.80 2.37 -678.31 -1.60 -29.41 16 10 C 0.21 10.04 5.81 85.63 0.50 10.54 16 11 C -0.17 -7.50 5.94 -18.59 -0.11 -7.61 16 12 C -0.02 -0.79 11.89 66.85 0.79 0.01 16 13 O -0.21 -8.31 10.58 -8.96 -0.09 -8.40 16 14 C 0.02 0.61 7.42 22.99 0.17 0.78 16 15 C -0.12 -3.18 10.07 22.35 0.23 -2.95 16 16 C -0.09 -1.92 10.01 22.30 0.22 -1.70 16 17 C -0.14 -3.18 9.98 22.04 0.22 -2.96 16 18 C -0.08 -2.55 10.05 22.20 0.22 -2.33 16 19 C -0.14 -5.22 6.38 -20.22 -0.13 -5.35 16 20 C 0.17 6.89 3.41 45.72 0.16 7.05 16 21 C -0.13 -5.11 6.42 31.69 0.20 -4.90 16 22 C -0.11 -3.39 6.91 31.91 0.22 -3.17 16 23 C -0.11 -3.64 6.83 31.67 0.22 -3.43 16 24 C -0.12 -4.55 6.15 31.32 0.19 -4.35 16 25 H 0.25 13.83 8.32 -92.72 -0.77 13.06 16 26 H 0.08 4.19 5.48 -2.39 -0.01 4.17 16 27 H 0.03 1.48 7.95 -2.39 -0.02 1.46 16 28 H 0.20 7.90 8.06 -2.91 -0.02 7.88 16 29 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.12 3.71 6.68 -2.91 -0.02 3.69 16 33 H 0.05 2.11 6.47 -2.38 -0.02 2.09 16 34 H 0.04 2.12 7.15 -2.39 -0.02 2.10 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.63 6.81 -2.39 -0.02 1.61 16 Total: -1.00 -62.16 332.26 5.77 -56.39 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 1.02 Total: 20.07 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 4.17 Total: -33.51 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -1.36 Total: -80.63 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.09 Total: -8.40 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.16 5.77 -56.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563173.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.899 kcal (2) G-P(sol) polarization free energy of solvation -62.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds