Wall clock time and date at job start Tue Mar 31 2020 06:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99889 * 2 1 4 4 C 1.53003 * 109.46848 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46567 * 65.00280 * 4 3 2 6 6 C 1.46504 * 119.99769 * 90.00176 * 5 4 3 7 7 C 1.50698 * 109.47404 * 89.99749 * 6 5 4 8 8 H 1.08001 * 119.99819 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00012 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00254 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99846 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47620 * 89.99863 * 11 9 7 13 13 H 1.48501 * 109.46880 * 210.00071 * 11 9 7 14 14 H 1.48505 * 109.47144 * 329.99543 * 11 9 7 15 15 C 1.34775 * 120.00411 * 269.99517 * 5 4 3 16 16 O 1.21279 * 120.00399 * 180.02562 * 15 5 4 17 17 C 1.50709 * 119.99648 * 0.02562 * 15 5 4 18 18 H 1.08999 * 115.54805 * 60.77785 * 17 15 5 19 19 C 1.52993 * 117.49523 * 206.48590 * 17 15 5 20 20 C 1.52995 * 117.49650 * 275.10976 * 17 15 5 21 21 H 1.08998 * 117.49608 * 145.02288 * 20 17 15 22 22 C 1.50699 * 117.50161 * 0.02562 * 20 17 15 23 23 O 1.20827 * 120.00218 * 272.75645 * 22 20 17 24 24 O 1.34224 * 120.00084 * 92.75445 * 22 20 17 25 25 C 1.45198 * 117.00176 * 180.02562 * 24 22 20 26 26 H 1.09004 * 109.47067 * 299.99931 * 1 2 3 27 27 H 1.09004 * 109.47152 * 59.99547 * 1 2 3 28 28 H 1.08994 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47360 * 300.00287 * 3 2 1 30 30 H 1.08998 * 109.47020 * 60.00212 * 3 2 1 31 31 H 1.08996 * 109.46929 * 184.99962 * 4 3 2 32 32 H 1.08992 * 109.47278 * 305.00698 * 4 3 2 33 33 H 1.09004 * 109.46920 * 209.99710 * 6 5 4 34 34 H 1.08998 * 109.47415 * 329.99151 * 6 5 4 35 35 H 0.96998 * 120.00428 * 180.02562 * 10 9 7 36 36 H 1.09006 * 117.49719 * 214.97713 * 19 17 15 37 37 H 1.08997 * 117.50438 * 0.02562 * 19 17 15 38 38 H 1.08995 * 109.47102 * 60.00341 * 25 24 22 39 39 H 1.09005 * 109.47279 * 180.02562 * 25 24 22 40 40 H 1.09003 * 109.46938 * 299.99780 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2882 1.3999 -2.4130 7 6 5.7461 1.7803 -2.3818 8 1 6.3775 1.4337 -1.5771 9 6 6.2740 2.5699 -3.3812 10 7 5.5053 2.9916 -4.3614 11 14 8.0813 3.0409 -3.3428 12 1 8.8747 2.0194 -4.0723 13 1 8.2618 4.3642 -3.9920 14 1 8.5441 3.1135 -1.9336 15 6 4.0959 -0.7760 -1.3333 16 8 4.4615 -1.2897 -2.3693 17 6 3.7749 -1.6359 -0.1380 18 1 2.7507 -1.5678 0.2287 19 6 4.4733 -2.9933 -0.0364 20 6 4.8824 -1.8508 0.8954 21 1 4.5868 -1.9245 1.9419 22 6 6.2106 -1.1859 0.6405 23 8 7.0482 -1.7456 -0.0266 24 8 6.4630 0.0280 1.1545 25 6 7.7629 0.6080 0.8678 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8464 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 3.9785 2.1765 0.0902 32 1 3.8508 0.5684 0.8426 33 1 4.0771 0.8448 -3.3270 34 1 3.6767 2.3018 -2.3863 35 1 5.8768 3.5469 -5.0646 36 1 3.9086 -3.8187 0.3972 37 1 5.1653 -3.2643 -0.8338 38 1 7.8829 0.7157 -0.2102 39 1 7.8365 1.5869 1.3415 40 1 8.5453 -0.0434 1.2572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:57 Heat of formation + Delta-G solvation = -133.105200 kcal Electronic energy + Delta-G solvation = -24481.014743 eV Core-core repulsion = 20876.712424 eV Total energy + Delta-G solvation = -3604.302319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46505 -39.04823 -37.64145 -36.51960 -35.46235 -34.76947 -32.62734 -29.57345 -27.86483 -27.41515 -26.21038 -24.55203 -23.93008 -22.69270 -21.65101 -20.21526 -18.47225 -17.45869 -16.67886 -16.59470 -16.47976 -16.04812 -15.60901 -15.49871 -15.14944 -14.72996 -14.49652 -14.17848 -13.52810 -13.27985 -12.78985 -12.59382 -12.31972 -12.13977 -11.88797 -11.76940 -11.72800 -11.59114 -11.19228 -11.05874 -10.82479 -10.64687 -10.49024 -10.45499 -10.32884 -10.08311 -10.03671 -9.62564 -9.52086 -8.85644 -8.42327 -7.61852 -6.03252 -4.07184 2.44795 2.92169 3.29568 3.31983 3.36304 3.38044 3.74995 3.92355 4.13527 4.44338 4.82336 4.94636 4.97069 5.18097 5.24335 5.30860 5.34029 5.43228 5.44924 5.49813 5.54823 5.59147 5.66729 5.70379 5.81602 5.95520 5.97967 6.05822 6.25041 6.39834 6.73557 7.06522 7.23091 7.47371 7.60447 7.93956 8.09214 8.25595 8.45860 8.92449 9.16214 9.57494 11.04889 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.007893 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.587104 B = 3546.657257 C = 4706.176886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.042 3.958 4 C 0.116 3.884 5 N -0.587 5.587 6 C 0.247 3.753 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.893 3.107 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.536 3.464 16 O -0.533 6.533 17 C -0.148 4.148 18 H 0.154 0.846 19 C -0.123 4.123 20 C -0.156 4.156 21 H 0.141 0.859 22 C 0.488 3.512 23 O -0.495 6.495 24 O -0.350 6.350 25 C 0.037 3.963 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 -4.418 15.021 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.036 4.036 4 C -0.009 4.009 5 N -0.318 5.318 6 C 0.128 3.872 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.721 3.279 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.322 3.678 16 O -0.410 6.410 17 C -0.169 4.169 18 H 0.171 0.829 19 C -0.160 4.160 20 C -0.176 4.176 21 H 0.158 0.842 22 C 0.330 3.670 23 O -0.382 6.382 24 O -0.266 6.266 25 C -0.056 4.056 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.483 -4.847 14.065 16.228 hybrid contribution 0.885 0.807 -0.014 1.198 sum -5.599 -4.040 14.050 15.655 Atomic orbital electron populations 1.22693 0.81727 1.02323 0.99721 1.87822 1.19169 1.28315 1.95398 1.23185 0.95345 0.84616 1.00431 1.21512 0.90775 1.00633 0.87987 1.48022 1.64556 1.05538 1.13733 1.19272 0.95801 0.89076 0.83092 1.21424 0.94780 1.30702 1.09091 0.92504 1.24909 0.97885 0.96032 0.95190 1.69925 1.35519 1.35845 1.12083 0.86586 0.85404 0.77784 0.78170 1.20533 1.21125 1.19915 1.19287 0.77916 0.82638 0.87978 1.90683 1.46403 1.72927 1.31019 1.22723 0.98582 0.99287 0.96300 0.82918 1.23089 1.01795 0.90849 1.00248 1.21779 0.91708 1.04916 0.99177 0.84169 1.22478 0.88559 0.79724 0.76271 1.90673 1.47475 1.64472 1.35542 1.86413 1.38014 1.32531 1.69669 1.23290 0.81250 0.97785 1.03297 0.94434 0.94205 0.90017 0.92621 0.92798 0.88493 0.90262 0.93961 0.95106 0.92778 0.86896 0.86678 0.91003 0.88219 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.28 7.56 -35.23 -0.27 -5.55 16 3 C 0.04 0.57 6.28 37.16 0.23 0.81 16 4 C 0.12 1.90 5.78 -4.04 -0.02 1.87 16 5 N -0.59 -12.69 2.44 -175.06 -0.43 -13.12 16 6 C 0.25 6.48 5.16 -5.19 -0.03 6.46 16 7 C -0.52 -14.74 9.39 -34.44 -0.32 -15.06 16 8 H 0.06 1.61 6.89 -52.49 -0.36 1.24 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 11 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.54 11.88 6.07 -10.98 -0.07 11.82 16 16 O -0.53 -14.45 16.16 5.56 0.09 -14.36 16 17 C -0.15 -2.43 4.25 -91.77 -0.39 -2.81 16 18 H 0.15 2.17 5.62 -51.93 -0.29 1.88 16 19 C -0.12 -1.81 9.55 -26.73 -0.26 -2.07 16 20 C -0.16 -2.30 5.64 -91.77 -0.52 -2.82 16 21 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 22 C 0.49 9.04 6.70 36.01 0.24 9.28 16 23 O -0.50 -10.87 16.18 -18.75 -0.30 -11.17 16 24 O -0.35 -6.04 10.42 -39.24 -0.41 -6.44 16 25 C 0.04 0.60 10.56 101.05 1.07 1.67 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.58 8.07 -51.93 -0.42 1.17 16 32 H 0.08 1.18 6.19 -51.93 -0.32 0.86 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.11 2.07 7.57 -51.93 -0.39 1.68 16 38 H 0.07 1.39 7.22 -51.93 -0.37 1.02 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -35.88 341.37 -5.41 -41.29 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.91 Total: 0.94 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 0.95 Total: 12.24 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.31 Total: -39.01 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.89 Total: -37.52 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.88 -5.41 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.815 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds