Wall clock time and date at job start Tue Mar 31 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99889 * 2 1 4 4 C 1.53003 * 109.46848 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46567 * 65.00280 * 4 3 2 6 6 C 1.46504 * 119.99769 * 90.00176 * 5 4 3 7 7 C 1.50698 * 109.47404 * 89.99749 * 6 5 4 8 8 H 1.08001 * 119.99819 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00012 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00254 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99846 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47620 * 89.99863 * 11 9 7 13 13 H 1.48501 * 109.46880 * 210.00071 * 11 9 7 14 14 H 1.48505 * 109.47144 * 329.99543 * 11 9 7 15 15 C 1.34775 * 120.00411 * 269.99517 * 5 4 3 16 16 O 1.21279 * 120.00399 * 180.02562 * 15 5 4 17 17 C 1.50709 * 119.99648 * 0.02562 * 15 5 4 18 18 H 1.08999 * 115.54805 * 60.77785 * 17 15 5 19 19 C 1.52993 * 117.49523 * 206.48590 * 17 15 5 20 20 C 1.52995 * 117.49650 * 275.10976 * 17 15 5 21 21 H 1.08998 * 117.49608 * 145.02288 * 20 17 15 22 22 C 1.50699 * 117.50161 * 0.02562 * 20 17 15 23 23 O 1.20827 * 120.00218 * 272.75645 * 22 20 17 24 24 O 1.34224 * 120.00084 * 92.75445 * 22 20 17 25 25 C 1.45198 * 117.00176 * 180.02562 * 24 22 20 26 26 H 1.09004 * 109.47067 * 299.99931 * 1 2 3 27 27 H 1.09004 * 109.47152 * 59.99547 * 1 2 3 28 28 H 1.08994 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47360 * 300.00287 * 3 2 1 30 30 H 1.08998 * 109.47020 * 60.00212 * 3 2 1 31 31 H 1.08996 * 109.46929 * 184.99962 * 4 3 2 32 32 H 1.08992 * 109.47278 * 305.00698 * 4 3 2 33 33 H 1.09004 * 109.46920 * 209.99710 * 6 5 4 34 34 H 1.08998 * 109.47415 * 329.99151 * 6 5 4 35 35 H 0.96998 * 120.00428 * 180.02562 * 10 9 7 36 36 H 1.09006 * 117.49719 * 214.97713 * 19 17 15 37 37 H 1.08997 * 117.50438 * 0.02562 * 19 17 15 38 38 H 1.08995 * 109.47102 * 60.00341 * 25 24 22 39 39 H 1.09005 * 109.47279 * 180.02562 * 25 24 22 40 40 H 1.09003 * 109.46938 * 299.99780 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2882 1.3999 -2.4130 7 6 5.7461 1.7803 -2.3818 8 1 6.3775 1.4337 -1.5771 9 6 6.2740 2.5699 -3.3812 10 7 5.5053 2.9916 -4.3614 11 14 8.0813 3.0409 -3.3428 12 1 8.8747 2.0194 -4.0723 13 1 8.2618 4.3642 -3.9920 14 1 8.5441 3.1135 -1.9336 15 6 4.0959 -0.7760 -1.3333 16 8 4.4615 -1.2897 -2.3693 17 6 3.7749 -1.6359 -0.1380 18 1 2.7507 -1.5678 0.2287 19 6 4.4733 -2.9933 -0.0364 20 6 4.8824 -1.8508 0.8954 21 1 4.5868 -1.9245 1.9419 22 6 6.2106 -1.1859 0.6405 23 8 7.0482 -1.7456 -0.0266 24 8 6.4630 0.0280 1.1545 25 6 7.7629 0.6080 0.8678 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8464 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 3.9785 2.1765 0.0902 32 1 3.8508 0.5684 0.8426 33 1 4.0771 0.8448 -3.3270 34 1 3.6767 2.3018 -2.3863 35 1 5.8768 3.5469 -5.0646 36 1 3.9086 -3.8187 0.3972 37 1 5.1653 -3.2643 -0.8338 38 1 7.8829 0.7157 -0.2102 39 1 7.8365 1.5869 1.3415 40 1 8.5453 -0.0434 1.2572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103215961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:56 Heat of formation + Delta-G solvation = -158.463535 kcal Electronic energy + Delta-G solvation = -24482.114363 eV Core-core repulsion = 20876.712424 eV Total energy + Delta-G solvation = -3605.401939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.91734 -40.63075 -38.74730 -37.94135 -36.94252 -36.49455 -34.74397 -31.06030 -29.31971 -29.17227 -27.12823 -26.17250 -25.46563 -24.07969 -23.24380 -21.56085 -20.00270 -18.95437 -18.67174 -18.06972 -17.74999 -17.55154 -16.92716 -16.87771 -16.71729 -16.09314 -15.97580 -15.59205 -15.09231 -14.77470 -14.30863 -14.23559 -13.97084 -13.50431 -13.42163 -13.16704 -13.05607 -13.01139 -12.90915 -12.69467 -12.54164 -12.19039 -12.05308 -11.86007 -11.78210 -11.67232 -11.52543 -11.43200 -10.67252 -10.63568 -10.52145 -9.44799 -8.24238 -6.37651 1.01655 1.29902 1.35201 1.42565 1.62016 1.72818 2.21236 2.39183 2.76162 2.91261 3.05406 3.51852 3.66556 3.73323 3.90524 4.21690 4.22564 4.24943 4.27710 4.33987 4.54856 4.63076 4.65497 4.66390 4.72118 4.82242 4.86994 4.96265 4.99139 5.02032 5.19424 5.22652 5.35830 5.56552 5.82785 6.05331 6.31534 6.66823 6.68312 6.76612 7.26644 7.47214 8.82949 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.007893 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.587104 B = 3546.657257 C = 4706.176886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.051 3.949 4 C 0.109 3.891 5 N -0.589 5.589 6 C 0.263 3.737 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.954 3.046 12 H -0.289 1.289 13 H -0.271 1.271 14 H -0.252 1.252 15 C 0.523 3.477 16 O -0.601 6.601 17 C -0.149 4.149 18 H 0.185 0.815 19 C -0.118 4.118 20 C -0.139 4.139 21 H 0.200 0.800 22 C 0.476 3.524 23 O -0.541 6.541 24 O -0.345 6.345 25 C 0.033 3.967 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.098 0.902 29 H 0.034 0.966 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.103 0.897 33 H -0.011 1.011 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.168 0.832 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.134 0.866 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 -4.452 18.713 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.027 4.027 4 C -0.014 4.014 5 N -0.318 5.318 6 C 0.142 3.858 7 C -0.572 4.572 8 H 0.071 0.929 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.779 3.221 12 H -0.216 1.216 13 H -0.196 1.196 14 H -0.176 1.176 15 C 0.312 3.688 16 O -0.482 6.482 17 C -0.169 4.169 18 H 0.202 0.798 19 C -0.155 4.155 20 C -0.157 4.157 21 H 0.217 0.783 22 C 0.320 3.680 23 O -0.430 6.430 24 O -0.261 6.261 25 C -0.060 4.060 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.116 0.884 29 H 0.052 0.948 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.008 0.992 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.185 0.815 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.152 0.848 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.281 -4.847 17.828 19.858 hybrid contribution 1.088 0.825 -1.194 1.814 sum -6.192 -4.022 16.634 18.199 Atomic orbital electron populations 1.22890 0.79798 1.03722 1.00453 1.87748 1.21176 1.28009 1.95568 1.23020 0.93113 0.85134 1.01406 1.21834 0.93039 1.00541 0.85952 1.48023 1.64146 1.05536 1.14132 1.18719 0.95083 0.88619 0.83399 1.21661 0.95667 1.30709 1.09204 0.92947 1.25783 1.02477 0.95943 0.94709 1.70040 1.37555 1.36392 1.12709 0.85614 0.79642 0.77554 0.79320 1.21569 1.19585 1.17590 1.20348 0.76468 0.82970 0.89064 1.90642 1.49385 1.74136 1.34083 1.22600 1.00454 0.99353 0.94536 0.79778 1.23266 1.00965 0.91853 0.99397 1.22145 0.88546 1.03393 1.01650 0.78308 1.23414 0.89629 0.79746 0.75187 1.90661 1.49366 1.65550 1.37467 1.86420 1.38503 1.32032 1.69132 1.23441 0.81501 1.00028 1.01023 0.91947 0.95192 0.88382 0.94755 0.88607 0.88734 0.87910 0.99242 0.95489 0.92488 0.81484 0.90828 0.95134 0.84772 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -9.86 7.56 -148.98 -1.13 -10.99 16 3 C 0.05 1.27 6.28 71.98 0.45 1.72 16 4 C 0.11 3.41 5.78 86.38 0.50 3.91 16 5 N -0.59 -26.01 2.44 -826.15 -2.02 -28.02 16 6 C 0.26 14.60 5.16 85.63 0.44 15.04 16 7 C -0.53 -31.37 9.39 25.60 0.24 -31.13 16 8 H 0.05 3.06 6.89 -2.91 -0.02 3.04 16 9 C 0.01 0.58 5.46 84.66 0.46 1.04 16 10 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 11 Si 0.95 45.71 29.54 68.60 2.03 47.73 16 12 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.25 -11.09 7.11 99.48 0.71 -10.38 16 15 C 0.52 23.70 6.07 87.66 0.53 24.23 16 16 O -0.60 -34.57 16.16 -3.03 -0.05 -34.62 16 17 C -0.15 -4.56 4.25 -11.54 -0.05 -4.61 16 18 H 0.19 4.50 5.62 -2.39 -0.01 4.49 16 19 C -0.12 -3.21 9.55 30.59 0.29 -2.91 16 20 C -0.14 -3.61 5.64 -11.54 -0.07 -3.67 16 21 H 0.20 2.87 8.14 -2.39 -0.02 2.85 16 22 C 0.48 17.09 6.70 71.24 0.48 17.57 16 23 O -0.54 -24.15 16.18 21.96 0.36 -23.80 16 24 O -0.35 -11.31 10.42 -51.36 -0.54 -11.84 16 25 C 0.03 1.04 10.56 113.37 1.20 2.23 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 2.99 8.07 -2.39 -0.02 2.97 16 32 H 0.10 2.74 6.19 -2.39 -0.01 2.72 16 33 H -0.01 -0.69 7.42 -2.38 -0.02 -0.71 16 34 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.17 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.07 2.69 7.57 -2.39 -0.02 2.67 16 38 H 0.03 1.19 7.22 -2.39 -0.02 1.17 16 39 H 0.13 3.15 8.14 -2.38 -0.02 3.13 16 40 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 Total: -1.00 -86.00 341.37 5.70 -80.30 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.04 Total: 12.86 kcal Atomic # 6 Polarization: 19.42 SS G_CDS: 5.73 Total: 25.14 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -1.73 Total: -84.79 kcal Atomic # 8 Polarization: -79.89 SS G_CDS: -1.36 Total: -81.25 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -86.00 5.70 -80.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.164 kcal (2) G-P(sol) polarization free energy of solvation -86.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds