Wall clock time and date at job start Tue Mar 31 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47135 * 2 1 4 4 C 1.53004 * 109.46859 * 119.99544 * 2 1 3 5 5 C 1.52998 * 109.47056 * 65.00374 * 4 2 1 6 6 N 1.46904 * 109.46987 * 178.02204 * 5 4 2 7 7 C 1.46897 * 110.99939 * 287.83571 * 6 5 4 8 8 C 1.50698 * 109.47063 * 160.48674 * 7 6 5 9 9 H 1.08008 * 120.00108 * 4.68507 * 8 7 6 10 10 C 1.37871 * 120.00484 * 184.68475 * 8 7 6 11 11 N 1.31516 * 119.99497 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00408 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47049 * 60.00379 * 12 10 8 14 14 H 1.48506 * 109.47368 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47225 * 299.99959 * 12 10 8 16 16 C 1.46901 * 110.99709 * 163.88445 * 6 5 4 17 17 N 1.46506 * 109.47069 * 293.95284 * 16 6 5 18 18 C 1.35039 * 126.03835 * 95.00571 * 17 16 6 19 19 C 1.35370 * 107.73187 * 179.97438 * 18 17 16 20 20 Cl 1.73595 * 126.04721 * 179.97438 * 19 18 17 21 21 C 1.39933 * 107.90786 * 359.97438 * 19 18 17 22 22 N 1.30855 * 108.20982 * 359.75734 * 21 19 18 23 23 H 1.08999 * 109.47411 * 300.00564 * 1 2 3 24 24 H 1.09003 * 109.46691 * 60.00081 * 1 2 3 25 25 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47411 * 239.99436 * 2 1 3 27 27 H 1.09004 * 109.47100 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46830 * 299.99875 * 3 2 1 29 29 H 1.09001 * 109.47222 * 59.99943 * 3 2 1 30 30 H 1.08999 * 109.47492 * 304.99880 * 4 2 1 31 31 H 1.09005 * 109.46857 * 185.00423 * 4 2 1 32 32 H 1.08995 * 109.47063 * 58.02265 * 5 4 2 33 33 H 1.09003 * 109.47099 * 298.01800 * 5 4 2 34 34 H 1.08991 * 109.47494 * 280.48729 * 7 6 5 35 35 H 1.08999 * 109.46859 * 40.49308 * 7 6 5 36 36 H 0.97004 * 120.00033 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.46699 * 173.95611 * 16 6 5 38 38 H 1.08996 * 109.47541 * 53.95212 * 16 6 5 39 39 H 1.08004 * 126.13518 * 359.93600 * 18 17 16 40 40 H 1.07998 * 125.89406 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1654 -2.8979 2.3643 7 6 3.6215 -3.0647 2.2659 8 6 4.1900 -3.3336 3.6354 9 1 3.5285 -3.4516 4.4811 10 6 5.5544 -3.4291 3.8090 11 7 6.3598 -3.2849 2.7793 12 14 6.2590 -3.7632 5.5064 13 1 5.7417 -5.0607 6.0105 14 1 7.7407 -3.8197 5.4250 15 1 5.8548 -2.6754 6.4330 16 6 1.4983 -4.1938 2.5484 17 7 0.0881 -3.9744 2.8796 18 6 -0.9418 -3.9704 2.0062 19 6 -2.0756 -3.7338 2.7069 20 17 -3.6791 -3.6287 2.0501 21 6 -1.7265 -3.5890 4.0542 22 7 -0.4308 -3.7386 4.1592 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6054 -0.2616 2.1370 31 1 3.1263 -0.6442 1.2953 32 1 2.0407 -2.6461 0.2824 33 1 0.5481 -2.2736 1.1776 34 1 3.8475 -3.9034 1.6076 35 1 4.0648 -2.1551 1.8608 36 1 7.3198 -3.3517 2.9014 37 1 1.9814 -4.7391 3.3591 38 1 1.5694 -4.7731 1.6278 39 1 -0.8731 -4.1271 0.9398 40 1 -2.4092 -3.3924 4.8676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103459960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:01 Heat of formation + Delta-G solvation = 63.174989 kcal Electronic energy + Delta-G solvation = -20738.049034 eV Core-core repulsion = 17615.259978 eV Total energy + Delta-G solvation = -3122.789056 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06068 -37.68433 -36.32797 -35.55063 -32.83198 -31.70840 -29.87816 -28.90371 -27.05605 -26.91045 -24.71694 -22.94220 -21.24871 -20.97106 -20.16474 -19.59570 -17.17953 -16.65615 -15.62270 -14.97910 -14.84726 -14.63483 -14.37778 -14.02847 -13.79510 -13.54526 -13.24585 -13.02469 -12.68516 -12.23102 -12.06286 -11.80288 -11.73765 -11.58037 -11.37985 -11.24827 -11.09757 -10.81305 -10.73689 -10.43749 -10.39604 -10.29038 -10.18845 -9.81476 -9.52298 -9.26851 -8.51836 -8.29249 -7.57016 -6.11879 -4.14188 1.92105 2.14684 2.76868 3.00186 3.30614 3.34507 3.38820 4.33827 4.56575 4.80118 4.87901 5.09446 5.12249 5.19558 5.22343 5.26812 5.58241 5.62722 5.72289 5.72965 5.82235 5.86283 5.92286 5.92676 5.98179 6.11720 6.25734 6.27773 6.40261 6.51513 6.62654 6.75357 6.92112 6.95994 7.16780 7.66412 7.79953 7.87121 7.99458 8.33537 8.93583 9.51273 10.98250 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.005359 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.357102 B = 5224.015283 C = 7024.727378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.105 4.105 5 C 0.050 3.950 6 N -0.544 5.544 7 C 0.198 3.802 8 C -0.513 4.513 9 H 0.065 0.935 10 C 0.059 3.941 11 N -0.898 5.898 12 Si 0.899 3.101 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.275 1.275 16 C 0.303 3.697 17 N -0.340 5.340 18 C 0.068 3.932 19 C -0.192 4.192 20 Cl -0.057 7.057 21 C 0.048 3.952 22 N -0.256 5.256 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.061 0.939 34 H -0.007 1.007 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.120 0.880 38 H 0.062 0.938 39 H 0.175 0.825 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 1.767 -5.674 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.143 4.143 5 C -0.078 4.078 6 N -0.270 5.270 7 C 0.074 3.926 8 C -0.552 4.552 9 H 0.083 0.917 10 C -0.143 4.143 11 N -0.537 5.537 12 Si 0.727 3.273 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.201 1.201 16 C 0.093 3.907 17 N -0.123 5.123 18 C -0.081 4.081 19 C -0.231 4.231 20 Cl -0.029 7.029 21 C -0.139 4.139 22 N -0.078 5.078 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.011 0.989 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.192 0.808 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.296 2.010 -4.605 14.214 hybrid contribution -0.202 -0.562 -0.526 0.796 sum -13.499 1.448 -5.131 14.513 Atomic orbital electron populations 1.21856 0.95609 1.01503 1.01180 1.21114 0.95524 0.96178 0.98723 1.21810 1.01164 0.96037 1.01189 1.21570 1.01860 0.93980 0.96897 1.22198 0.98833 0.95262 0.91547 1.62016 1.08662 1.17762 1.38537 1.19778 0.78219 0.96993 0.97581 1.21128 0.91416 1.48607 0.94014 0.91682 1.24957 0.96980 0.95258 0.97074 1.69935 1.03709 1.50054 1.29991 0.86541 0.77596 0.78984 0.84219 1.20202 1.21357 1.20082 1.22259 0.74406 0.92701 1.01321 1.48929 1.07234 1.52078 1.04028 1.22168 0.87148 1.01633 0.97147 1.20706 0.86747 1.21938 0.93749 1.98294 1.21130 1.97657 1.85860 1.23829 0.93201 1.01280 0.95611 1.77627 1.08918 1.20110 1.01114 0.92821 0.93322 0.92820 0.91655 0.92587 0.93211 0.92803 0.91644 0.91026 0.95619 0.92092 0.98917 0.93611 0.92739 0.86227 0.92089 0.80823 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.95 37.16 0.33 -1.39 16 2 C -0.10 -1.27 2.92 -90.61 -0.26 -1.54 16 3 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 4 C -0.11 -1.73 4.78 -26.73 -0.13 -1.86 16 5 C 0.05 0.84 4.59 -3.82 -0.02 0.82 16 6 N -0.54 -10.88 4.52 -239.99 -1.08 -11.97 16 7 C 0.20 4.76 4.59 -4.98 -0.02 4.73 16 8 C -0.51 -13.73 8.61 -34.44 -0.30 -14.03 16 9 H 0.06 1.77 7.65 -52.48 -0.40 1.37 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 12 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.30 5.38 6.00 -63.31 -0.38 5.00 16 17 N -0.34 -5.59 3.51 -64.34 -0.23 -5.82 16 18 C 0.07 0.94 9.70 -17.16 -0.17 0.77 16 19 C -0.19 -2.59 6.65 -39.97 -0.27 -2.86 16 20 Cl -0.06 -0.67 29.30 -51.86 -1.52 -2.19 16 21 C 0.05 0.69 12.02 -17.33 -0.21 0.48 16 22 N -0.26 -4.50 12.58 30.64 0.39 -4.11 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.64 6.61 -51.93 -0.34 0.30 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.34 6.50 -51.93 -0.34 1.00 16 32 H 0.03 0.42 8.05 -51.93 -0.42 0.01 16 33 H 0.06 0.94 4.37 -51.93 -0.23 0.72 16 34 H -0.01 -0.17 8.00 -51.93 -0.42 -0.59 16 35 H 0.05 1.18 6.24 -51.93 -0.32 0.86 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.12 2.35 7.31 -51.93 -0.38 1.97 16 38 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 39 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.19 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -28.61 341.75 -8.96 -37.57 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.21 Total: -0.32 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.17 Total: -9.76 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.19 Total: -46.69 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.52 Total: -2.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.61 -8.96 -37.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.748 kcal (2) G-P(sol) polarization free energy of solvation -28.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds