Wall clock time and date at job start Tue Mar 31 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47135 * 2 1 4 4 C 1.53004 * 109.46859 * 119.99544 * 2 1 3 5 5 C 1.52998 * 109.47056 * 65.00374 * 4 2 1 6 6 N 1.46904 * 109.46987 * 178.02204 * 5 4 2 7 7 C 1.46897 * 110.99939 * 287.83571 * 6 5 4 8 8 C 1.50698 * 109.47063 * 160.48674 * 7 6 5 9 9 H 1.08008 * 120.00108 * 4.68507 * 8 7 6 10 10 C 1.37871 * 120.00484 * 184.68475 * 8 7 6 11 11 N 1.31516 * 119.99497 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00408 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47049 * 60.00379 * 12 10 8 14 14 H 1.48506 * 109.47368 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47225 * 299.99959 * 12 10 8 16 16 C 1.46901 * 110.99709 * 163.88445 * 6 5 4 17 17 N 1.46506 * 109.47069 * 293.95284 * 16 6 5 18 18 C 1.35039 * 126.03835 * 95.00571 * 17 16 6 19 19 C 1.35370 * 107.73187 * 179.97438 * 18 17 16 20 20 Cl 1.73595 * 126.04721 * 179.97438 * 19 18 17 21 21 C 1.39933 * 107.90786 * 359.97438 * 19 18 17 22 22 N 1.30855 * 108.20982 * 359.75734 * 21 19 18 23 23 H 1.08999 * 109.47411 * 300.00564 * 1 2 3 24 24 H 1.09003 * 109.46691 * 60.00081 * 1 2 3 25 25 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47411 * 239.99436 * 2 1 3 27 27 H 1.09004 * 109.47100 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46830 * 299.99875 * 3 2 1 29 29 H 1.09001 * 109.47222 * 59.99943 * 3 2 1 30 30 H 1.08999 * 109.47492 * 304.99880 * 4 2 1 31 31 H 1.09005 * 109.46857 * 185.00423 * 4 2 1 32 32 H 1.08995 * 109.47063 * 58.02265 * 5 4 2 33 33 H 1.09003 * 109.47099 * 298.01800 * 5 4 2 34 34 H 1.08991 * 109.47494 * 280.48729 * 7 6 5 35 35 H 1.08999 * 109.46859 * 40.49308 * 7 6 5 36 36 H 0.97004 * 120.00033 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.46699 * 173.95611 * 16 6 5 38 38 H 1.08996 * 109.47541 * 53.95212 * 16 6 5 39 39 H 1.08004 * 126.13518 * 359.93600 * 18 17 16 40 40 H 1.07998 * 125.89406 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1654 -2.8979 2.3643 7 6 3.6215 -3.0647 2.2659 8 6 4.1900 -3.3336 3.6354 9 1 3.5285 -3.4516 4.4811 10 6 5.5544 -3.4291 3.8090 11 7 6.3598 -3.2849 2.7793 12 14 6.2590 -3.7632 5.5064 13 1 5.7417 -5.0607 6.0105 14 1 7.7407 -3.8197 5.4250 15 1 5.8548 -2.6754 6.4330 16 6 1.4983 -4.1938 2.5484 17 7 0.0881 -3.9744 2.8796 18 6 -0.9418 -3.9704 2.0062 19 6 -2.0756 -3.7338 2.7069 20 17 -3.6791 -3.6287 2.0501 21 6 -1.7265 -3.5890 4.0542 22 7 -0.4308 -3.7386 4.1592 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6054 -0.2616 2.1370 31 1 3.1263 -0.6442 1.2953 32 1 2.0407 -2.6461 0.2824 33 1 0.5481 -2.2736 1.1776 34 1 3.8475 -3.9034 1.6076 35 1 4.0648 -2.1551 1.8608 36 1 7.3198 -3.3517 2.9014 37 1 1.9814 -4.7391 3.3591 38 1 1.5694 -4.7731 1.6278 39 1 -0.8731 -4.1271 0.9398 40 1 -2.4092 -3.3924 4.8676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103459960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:00 Heat of formation + Delta-G solvation = 47.282403 kcal Electronic energy + Delta-G solvation = -20738.738188 eV Core-core repulsion = 17615.259978 eV Total energy + Delta-G solvation = -3123.478210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23369 -39.10876 -37.32685 -36.81811 -34.79437 -33.06943 -31.05078 -30.36796 -28.63785 -28.00318 -26.16112 -24.64298 -22.59837 -22.09833 -21.52978 -20.79357 -18.65155 -18.36263 -17.18709 -16.52180 -16.13054 -15.99720 -15.74886 -15.28511 -15.02032 -14.84190 -14.42472 -14.27779 -14.09827 -13.72004 -13.47762 -13.25780 -13.05070 -12.79111 -12.69090 -12.67292 -12.51549 -12.31006 -12.24496 -12.02464 -11.56488 -11.50208 -11.40917 -11.35604 -11.27770 -10.64036 -10.58501 -9.43091 -9.15717 -8.21652 -6.30624 0.77849 1.03403 1.40677 1.42253 1.50402 1.67422 1.84458 2.39144 3.05890 3.15606 3.66360 3.77833 3.92118 3.99115 4.03086 4.12014 4.32144 4.39080 4.49626 4.58811 4.62274 4.66291 4.78574 4.83158 4.92508 5.01790 5.05942 5.10409 5.18290 5.21164 5.31094 5.43637 5.48358 5.52230 5.62354 5.82615 6.04238 6.21807 6.45579 6.68025 6.83055 7.38803 8.87882 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.005359 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.357102 B = 5224.015283 C = 7024.727378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.100 4.100 5 C 0.055 3.945 6 N -0.559 5.559 7 C 0.217 3.783 8 C -0.524 4.524 9 H 0.054 0.946 10 C 0.012 3.988 11 N -0.928 5.928 12 Si 0.959 3.041 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.275 1.275 16 C 0.310 3.690 17 N -0.353 5.353 18 C 0.073 3.927 19 C -0.194 4.194 20 Cl -0.037 7.037 21 C 0.056 3.944 22 N -0.308 5.308 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.080 0.920 34 H -0.022 1.022 35 H 0.022 0.978 36 H 0.265 0.735 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.204 0.796 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.409 1.836 -6.336 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.138 4.138 5 C -0.073 4.073 6 N -0.285 5.285 7 C 0.092 3.908 8 C -0.563 4.563 9 H 0.072 0.928 10 C -0.187 4.187 11 N -0.568 5.568 12 Si 0.785 3.215 13 H -0.194 1.194 14 H -0.206 1.206 15 H -0.201 1.201 16 C 0.100 3.900 17 N -0.136 5.136 18 C -0.075 4.075 19 C -0.233 4.233 20 Cl -0.008 7.008 21 C -0.131 4.131 22 N -0.129 5.129 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.098 0.902 34 H -0.004 1.004 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.221 0.779 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -15.263 2.076 -5.270 16.280 hybrid contribution 0.255 -0.571 -0.339 0.711 sum -15.008 1.505 -5.609 16.092 Atomic orbital electron populations 1.21809 0.94054 1.01819 1.01943 1.21084 0.96731 0.96353 0.96880 1.21804 1.00549 0.95552 1.02184 1.21510 0.99779 0.94345 0.98131 1.22231 0.99683 0.94876 0.90461 1.61838 1.06644 1.19548 1.40479 1.19336 0.80821 0.94975 0.95704 1.21384 0.91681 1.48308 0.94910 0.92758 1.25714 0.97370 0.95087 1.00509 1.70034 1.03944 1.51012 1.31813 0.85588 0.77078 0.78913 0.79953 1.19443 1.20645 1.20071 1.22014 0.75128 0.91511 1.01366 1.48690 1.06934 1.53557 1.04436 1.22668 0.86348 1.00303 0.98156 1.20782 0.87713 1.21319 0.93457 1.98306 1.19469 1.97562 1.85509 1.24330 0.92573 0.99317 0.96929 1.77587 1.10634 1.22428 1.02225 0.93397 0.91210 0.92702 0.91105 0.93635 0.90963 0.93029 0.93313 0.94140 0.95034 0.90171 1.00427 0.95990 0.92613 0.88877 0.89612 0.77925 0.77265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.95 71.98 0.64 -2.33 16 2 C -0.09 -2.31 2.92 -10.79 -0.03 -2.34 16 3 C -0.14 -3.33 9.19 71.98 0.66 -2.67 16 4 C -0.10 -3.32 4.78 30.59 0.15 -3.18 16 5 C 0.06 1.83 4.59 86.30 0.40 2.22 16 6 N -0.56 -22.79 4.52 -913.18 -4.13 -26.92 16 7 C 0.22 10.80 4.59 85.56 0.39 11.19 16 8 C -0.52 -28.91 8.61 25.60 0.22 -28.69 16 9 H 0.05 3.05 7.65 -2.91 -0.02 3.03 16 10 C 0.01 0.67 5.46 84.65 0.46 1.13 16 11 N -0.93 -53.85 13.29 21.45 0.28 -53.56 16 12 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 C 0.31 11.07 6.00 170.80 1.02 12.09 16 17 N -0.35 -11.34 3.51 -357.46 -1.25 -12.59 16 18 C 0.07 1.85 9.70 83.54 0.81 2.66 16 19 C -0.19 -4.75 6.65 22.02 0.15 -4.61 16 20 Cl -0.04 -0.74 29.30 -2.72 -0.08 -0.82 16 21 C 0.06 1.50 12.02 85.25 1.02 2.53 16 22 N -0.31 -10.65 12.58 -56.97 -0.72 -11.36 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.15 6.61 -2.39 -0.02 1.14 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.58 6.50 -2.38 -0.02 1.57 16 32 H 0.03 1.02 8.05 -2.39 -0.02 1.00 16 33 H 0.08 2.35 4.37 -2.39 -0.01 2.34 16 34 H -0.02 -1.13 8.00 -2.39 -0.02 -1.15 16 35 H 0.02 1.19 6.24 -2.39 -0.01 1.18 16 36 H 0.27 14.59 8.31 -92.71 -0.77 13.81 16 37 H 0.09 3.79 7.31 -2.39 -0.02 3.77 16 38 H 0.09 2.60 8.11 -2.39 -0.02 2.58 16 39 H 0.20 3.73 8.06 -2.91 -0.02 3.70 16 40 H 0.21 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -62.59 341.75 3.04 -59.55 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.01 Total: 11.54 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 5.90 Total: -11.98 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -5.81 Total: -104.43 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -62.59 3.04 -59.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.832 kcal (2) G-P(sol) polarization free energy of solvation -62.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds