Wall clock time and date at job start Tue Mar 31 2020 05:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99858 * 2 1 4 4 C 1.53002 * 109.47356 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46745 * 68.07893 * 4 3 2 6 6 C 1.46905 * 110.99762 * 157.93533 * 5 4 3 7 7 C 1.50704 * 109.46643 * 287.98164 * 6 5 4 8 8 H 1.08006 * 120.00182 * 2.76206 * 7 6 5 9 9 C 1.37874 * 119.99736 * 182.77063 * 7 6 5 10 10 N 1.31517 * 120.00452 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99803 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47284 * 89.99499 * 11 9 7 13 13 H 1.48504 * 109.46973 * 209.99671 * 11 9 7 14 14 H 1.48504 * 109.46797 * 329.99083 * 11 9 7 15 15 C 1.46906 * 111.00002 * 281.88012 * 5 4 3 16 16 C 1.50695 * 109.47285 * 164.66393 * 15 5 4 17 17 C 1.38262 * 119.96233 * 270.02328 * 16 15 5 18 18 C 1.38216 * 120.06980 * 179.97438 * 17 16 15 19 19 C 1.38409 * 119.99771 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.03084 * 180.27815 * 19 18 17 21 21 C 1.38643 * 119.93377 * 359.97438 * 19 18 17 22 22 F 1.35097 * 120.03830 * 180.02562 * 21 19 18 23 23 C 1.38203 * 119.96594 * 90.00250 * 16 15 5 24 24 H 1.09001 * 109.47605 * 59.99776 * 1 2 3 25 25 H 1.09009 * 109.46742 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47427 * 299.99463 * 1 2 3 27 27 H 1.09004 * 109.47310 * 60.00164 * 3 2 1 28 28 H 1.09004 * 109.47047 * 300.00248 * 3 2 1 29 29 H 1.09002 * 109.46800 * 308.07910 * 4 3 2 30 30 H 1.08999 * 109.47230 * 188.07611 * 4 3 2 31 31 H 1.09000 * 109.47453 * 47.97562 * 6 5 4 32 32 H 1.09000 * 109.47005 * 167.98307 * 6 5 4 33 33 H 0.96995 * 119.99878 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46614 * 44.65862 * 15 5 4 35 35 H 1.08998 * 109.47169 * 284.66460 * 15 5 4 36 36 H 1.08001 * 119.96683 * 359.97438 * 17 16 15 37 37 H 1.08000 * 119.99807 * 180.02562 * 18 17 16 38 38 H 1.08001 * 120.00215 * 0.04352 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9821 0.6309 -1.2858 6 6 5.3871 0.9720 -1.5461 7 6 5.4948 2.4381 -1.8781 8 1 4.6152 3.0641 -1.8505 9 6 6.7164 2.9801 -2.2171 10 7 7.7877 2.2179 -2.2504 11 14 6.8501 4.7975 -2.6279 12 1 7.1324 5.5656 -1.3888 13 1 7.9524 5.0052 -3.6011 14 1 5.5717 5.2663 -3.2206 15 6 3.7760 -0.8229 -1.3327 16 6 3.8820 -1.2995 -2.7583 17 6 2.7541 -1.3460 -3.5566 18 6 2.8489 -1.7823 -4.8646 19 6 4.0738 -2.1738 -5.3765 20 9 4.1682 -2.5951 -6.6566 21 6 5.2049 -2.1272 -4.5761 22 9 6.4016 -2.5083 -5.0737 23 6 5.1067 -1.6893 -3.2666 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8479 0.5241 0.8081 30 1 3.9779 2.1703 0.1437 31 1 5.9838 0.7554 -0.6600 32 1 5.7549 0.3814 -2.3852 33 1 8.6471 2.5994 -2.4886 34 1 2.7870 -1.0623 -0.9420 35 1 4.5354 -1.3172 -0.7269 36 1 1.7979 -1.0411 -3.1576 37 1 1.9671 -1.8178 -5.4873 38 1 5.9870 -1.6529 -2.6420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110363981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:21 Heat of formation + Delta-G solvation = -106.006937 kcal Electronic energy + Delta-G solvation = -22806.752375 eV Core-core repulsion = 19092.537609 eV Total energy + Delta-G solvation = -3714.214766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.12584 -48.19908 -39.05564 -37.84239 -35.98982 -32.62810 -31.34471 -30.41995 -29.18546 -27.06912 -26.20048 -24.35117 -22.99267 -22.32130 -21.45152 -19.98047 -17.59451 -16.89841 -16.70746 -16.37590 -16.14836 -15.96466 -15.65156 -15.05528 -14.64469 -14.62611 -14.28903 -14.15302 -14.05074 -13.67880 -13.48860 -12.73403 -12.60893 -12.25394 -11.80333 -11.67601 -11.55536 -11.39903 -11.26237 -11.02953 -10.90706 -10.70845 -10.63620 -10.34564 -9.85802 -9.32952 -9.23639 -8.70494 -8.42921 -8.27878 -7.31638 -6.04011 -4.05179 1.25943 1.35371 3.30018 3.37306 3.40620 3.66973 4.00706 4.13406 4.41780 4.64692 4.84405 4.92636 5.13323 5.29834 5.31889 5.32773 5.40709 5.50876 5.63552 5.67910 5.73000 5.79830 5.92105 6.03578 6.14119 6.24258 6.28781 6.34317 6.40530 6.55514 6.82948 7.09343 7.21553 7.28049 7.37474 7.78521 8.06270 8.16303 8.50190 9.01594 9.58900 11.06592 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.009527 B = 0.007334 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.323712 B = 3816.770744 C = 6051.084812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.066 3.934 4 C 0.064 3.936 5 N -0.527 5.527 6 C 0.184 3.816 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.081 3.919 16 C -0.036 4.036 17 C -0.081 4.081 18 C -0.132 4.132 19 C 0.052 3.948 20 F -0.138 7.138 21 C 0.067 3.933 22 F -0.133 7.133 23 C -0.109 4.109 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.099 0.901 31 H -0.011 1.011 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.104 0.896 35 H 0.033 0.967 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 -7.393 1.494 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.010 4.010 4 C -0.065 4.065 5 N -0.252 5.252 6 C 0.059 3.941 7 C -0.545 4.545 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.046 4.046 16 C -0.037 4.037 17 C -0.100 4.100 18 C -0.151 4.151 19 C 0.032 3.968 20 F -0.116 7.116 21 C 0.047 3.953 22 F -0.112 7.112 23 C -0.128 4.128 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.007 0.993 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.051 0.949 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.548 -7.358 1.026 14.582 hybrid contribution 0.870 0.843 -0.072 1.213 sum -11.678 -6.515 0.954 13.407 Atomic orbital electron populations 1.22672 0.82297 1.02024 0.99604 1.87852 1.18690 1.29005 1.95226 1.22773 0.94651 0.83914 0.99709 1.22068 0.91867 1.01596 0.90930 1.62110 1.25269 1.07782 1.30014 1.19918 0.81034 0.97221 0.95945 1.21123 0.93803 0.93631 1.45958 0.91966 1.24973 0.95803 0.98051 0.95692 1.69940 0.99301 1.35476 1.48880 0.86546 0.77780 0.85241 0.78148 1.20770 1.21274 1.19815 1.21332 1.02642 0.90342 0.90331 1.19819 0.91596 0.94946 0.97314 1.20901 0.99295 0.97648 0.92162 1.20963 0.95618 1.01575 0.96951 1.17636 0.94217 1.05230 0.79698 1.91476 1.96947 1.88028 1.35192 1.17647 0.80120 1.04188 0.93381 1.91502 1.43002 1.88953 1.87710 1.21144 0.99664 0.98796 0.93216 0.94284 0.90269 0.94700 0.93905 0.92358 0.95055 0.88265 0.99273 0.94179 0.92899 0.87822 0.94907 0.84513 0.84307 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.33 7.93 -35.23 -0.28 -5.61 16 3 C 0.07 0.95 6.25 37.16 0.23 1.19 16 4 C 0.06 1.12 5.36 -3.82 -0.02 1.10 16 5 N -0.53 -10.56 4.32 -237.51 -1.03 -11.59 16 6 C 0.18 4.53 4.56 -4.97 -0.02 4.51 16 7 C -0.51 -13.72 8.37 -34.44 -0.29 -14.01 16 8 H 0.06 1.66 7.65 -52.48 -0.40 1.26 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 11 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.08 1.39 4.92 -4.97 -0.02 1.37 16 16 C -0.04 -0.60 5.07 -104.63 -0.53 -1.14 16 17 C -0.08 -1.19 9.70 -39.58 -0.38 -1.57 16 18 C -0.13 -1.86 10.02 -39.53 -0.40 -2.26 16 19 C 0.05 0.86 7.31 -39.37 -0.29 0.57 16 20 F -0.14 -2.28 17.18 2.25 0.04 -2.24 16 21 C 0.07 1.20 7.31 -39.36 -0.29 0.91 16 22 F -0.13 -2.51 17.18 2.25 0.04 -2.47 16 23 C -0.11 -1.96 8.05 -39.53 -0.32 -2.28 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.54 7.96 -51.93 -0.41 0.12 16 30 H 0.10 1.89 7.00 -51.93 -0.36 1.53 16 31 H -0.01 -0.28 8.05 -51.93 -0.42 -0.70 16 32 H 0.04 1.05 5.33 -51.93 -0.28 0.78 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 34 H 0.10 1.63 5.09 -51.93 -0.26 1.37 16 35 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 36 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.14 2.67 7.57 -52.49 -0.40 2.27 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -29.83 325.92 -6.96 -36.79 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.04 Total: -1.94 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.31 Total: -8.70 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.29 Total: -37.12 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.28 Total: -5.61 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.08 Total: -4.71 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.83 -6.96 -36.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110363981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.220 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds