Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34631 * 117.00190 * 2 1 4 4 O 1.21514 * 119.99751 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00168 * 179.97438 * 3 2 1 6 6 C 1.46932 * 120.62822 * 0.02562 * 5 3 2 7 7 C 1.53194 * 108.77672 * 233.58855 * 6 5 3 8 8 C 1.53046 * 109.30871 * 305.36738 * 7 6 5 9 9 C 1.53041 * 109.54081 * 61.36673 * 8 7 6 10 10 H 1.09004 * 109.52408 * 58.59520 * 9 8 7 11 11 C 1.50693 * 109.50009 * 178.68045 * 9 8 7 12 12 O 1.20829 * 119.99721 * 359.83794 * 11 9 8 13 13 O 1.34225 * 120.00501 * 179.83765 * 11 9 8 14 14 C 1.45200 * 117.00537 * 180.02562 * 13 11 9 15 15 H 1.09007 * 109.46502 * 329.99927 * 14 13 11 16 16 C 1.52998 * 109.47076 * 89.99893 * 14 13 11 17 17 C 1.50701 * 109.47210 * 210.00283 * 14 13 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27726 * 17 14 13 20 20 N 1.31523 * 119.99908 * 179.72112 * 19 17 14 21 21 Si 1.86800 * 120.00405 * 359.71709 * 19 17 14 22 22 H 1.48500 * 109.47210 * 90.00069 * 21 19 17 23 23 H 1.48504 * 109.47424 * 210.00300 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00390 * 21 19 17 25 25 C 1.46928 * 120.63337 * 180.02562 * 5 3 2 26 26 H 1.09001 * 109.47071 * 60.00141 * 1 2 3 27 27 H 1.08999 * 109.47408 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47689 * 300.00284 * 1 2 3 29 29 H 1.08995 * 109.58557 * 353.37439 * 6 5 3 30 30 H 1.09002 * 109.58257 * 113.65700 * 6 5 3 31 31 H 1.08994 * 109.49574 * 65.31409 * 7 6 5 32 32 H 1.09000 * 109.49731 * 185.38321 * 7 6 5 33 33 H 1.08997 * 109.45890 * 301.34353 * 8 7 6 34 34 H 1.09009 * 109.45504 * 181.38691 * 8 7 6 35 35 H 1.08998 * 109.47156 * 60.00051 * 16 14 13 36 36 H 1.09004 * 109.46783 * 180.02562 * 16 14 13 37 37 H 1.09005 * 109.46870 * 300.00112 * 16 14 13 38 38 H 0.96995 * 120.00181 * 179.97438 * 20 19 17 39 39 H 1.08999 * 109.58113 * 6.61905 * 25 5 3 40 40 H 1.08999 * 109.58351 * 246.19965 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2186 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2229 0.0467 0.0005 7 6 5.2124 0.1126 1.1682 8 6 6.0233 1.4069 1.0718 9 6 5.0816 2.6094 1.1683 10 1 4.5351 2.5695 2.1106 11 6 5.8842 3.8833 1.1059 12 8 7.0868 3.8349 0.9985 13 8 5.2634 5.0716 1.1696 14 6 6.0997 6.2567 1.1030 15 1 7.0780 6.0355 1.5299 16 6 6.2649 6.6829 -0.3572 17 6 5.4524 7.3727 1.8819 18 1 4.5069 7.2079 2.3771 19 6 6.0643 8.6059 1.9571 20 7 5.4967 9.5816 2.6323 21 14 7.6994 8.8912 1.1001 22 1 7.4558 9.3732 -0.2832 23 1 8.4797 9.9091 1.8487 24 1 8.4626 7.6182 1.0535 25 6 4.0906 2.5718 0.0011 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.5758 -0.8225 0.1186 30 1 4.7687 -0.0291 -0.9400 31 1 4.6648 0.0957 2.1104 32 1 5.8857 -0.7434 1.1232 33 1 6.5511 1.4346 0.1186 34 1 6.7453 1.4447 1.8877 35 1 5.2867 6.9040 -0.7840 36 1 6.8931 7.5723 -0.4071 37 1 6.7331 5.8756 -0.9205 38 1 5.9273 10.4491 2.6855 39 1 3.3563 3.3685 0.1194 40 1 4.6276 2.7034 -0.9383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -163.893985 kcal Electronic energy + Delta-G solvation = -23328.315970 eV Core-core repulsion = 19722.678549 eV Total energy + Delta-G solvation = -3605.637421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.89580 -39.94791 -38.15104 -36.39627 -35.93161 -33.30785 -33.09170 -31.69311 -30.49373 -27.99507 -25.53044 -25.24786 -24.67999 -22.42509 -21.30362 -20.26073 -19.48487 -18.34824 -17.23077 -17.18418 -16.66680 -16.56686 -15.77967 -15.70209 -14.95228 -14.73281 -14.30430 -14.20641 -14.06531 -13.65224 -13.27235 -12.95295 -12.86124 -12.67474 -12.31388 -12.25556 -11.84328 -11.79053 -11.45093 -11.21593 -11.16707 -10.93646 -10.90205 -10.78765 -10.58739 -10.23220 -10.02080 -9.78931 -9.59657 -9.12975 -8.97908 -8.68852 -6.22137 -4.24688 1.90926 2.64439 2.77762 3.18433 3.30419 3.31847 3.36938 3.70964 4.26379 4.52671 4.62568 4.68968 4.77420 4.94488 5.03059 5.03981 5.08689 5.21177 5.24865 5.33092 5.49581 5.55874 5.59505 5.65818 5.74703 5.97110 6.09803 6.14315 6.15265 6.19344 6.27088 6.39568 6.58009 7.01507 7.12711 7.33678 7.50243 8.11911 8.20068 8.56153 8.85487 9.34551 10.90032 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.004074 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.129328 B = 6871.439246 C = 7613.646689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.648 3.352 4 O -0.563 6.563 5 N -0.593 5.593 6 C 0.109 3.891 7 C -0.134 4.134 8 C -0.105 4.105 9 C -0.097 4.097 10 H 0.111 0.889 11 C 0.460 3.540 12 O -0.517 6.517 13 O -0.337 6.337 14 C 0.190 3.810 15 H 0.046 0.954 16 C -0.170 4.170 17 C -0.525 4.525 18 H 0.088 0.912 19 C 0.080 3.920 20 N -0.888 5.888 21 Si 0.880 3.120 22 H -0.273 1.273 23 H -0.290 1.290 24 H -0.263 1.263 25 C 0.138 3.862 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.269 0.731 39 H 0.114 0.886 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.199 -22.414 -6.013 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.451 6.451 5 N -0.333 5.333 6 C -0.013 4.013 7 C -0.172 4.172 8 C -0.143 4.143 9 C -0.118 4.118 10 H 0.129 0.871 11 C 0.302 3.698 12 O -0.407 6.407 13 O -0.253 6.253 14 C 0.137 3.863 15 H 0.064 0.936 16 C -0.227 4.227 17 C -0.563 4.563 18 H 0.106 0.894 19 C -0.124 4.124 20 N -0.525 5.525 21 Si 0.709 3.291 22 H -0.200 1.200 23 H -0.217 1.217 24 H -0.187 1.187 25 C 0.017 3.983 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.132 -21.881 -5.986 23.058 hybrid contribution 0.859 0.455 -0.406 1.053 sum -3.273 -21.425 -6.392 22.597 Atomic orbital electron populations 1.23193 0.74456 1.03301 1.02925 1.86204 1.24111 1.31088 1.87225 1.18002 0.83068 0.82191 0.76485 1.91049 1.64019 1.34773 1.55285 1.46861 1.01968 1.08371 1.76141 1.21809 0.93914 0.86455 0.99152 1.21957 0.98119 0.98262 0.98875 1.21439 0.97023 0.91555 1.04288 1.21394 0.97043 0.91162 1.02162 0.87090 1.23120 0.87189 0.86463 0.73010 1.90602 1.15945 1.88202 1.45903 1.86537 1.42933 1.14702 1.81096 1.20947 0.91576 0.80129 0.93666 0.93618 1.22531 1.01765 0.99945 0.98504 1.20795 1.09592 0.93529 1.32393 0.89431 1.24736 0.97342 0.95341 0.94948 1.69842 1.38973 1.03011 1.40647 0.86965 0.84246 0.78593 0.79302 1.19987 1.21693 1.18749 1.21550 0.95312 0.84207 0.97276 0.91828 0.88077 0.91744 0.88841 0.90871 0.91066 0.89814 0.90598 0.90235 0.91660 0.92517 0.94436 0.92063 0.86729 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -4.02 9.20 -40.30 -0.37 -4.39 16 3 C 0.65 8.78 8.43 54.05 0.46 9.24 16 4 O -0.56 -9.64 15.55 -19.28 -0.30 -9.94 16 5 N -0.59 -7.03 2.97 -178.58 -0.53 -7.56 16 6 C 0.11 0.91 6.45 -3.71 -0.02 0.89 16 7 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 8 C -0.11 -1.17 4.46 -26.69 -0.12 -1.29 16 9 C -0.10 -1.36 2.78 -91.67 -0.25 -1.61 16 10 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 11 C 0.46 8.79 7.23 36.00 0.26 9.05 16 12 O -0.52 -10.92 15.20 -18.75 -0.29 -11.21 16 13 O -0.34 -7.64 9.79 -39.24 -0.38 -8.02 16 14 C 0.19 4.81 2.15 -27.88 -0.06 4.75 16 15 H 0.05 1.21 6.22 -51.93 -0.32 0.89 16 16 C -0.17 -3.87 9.03 37.16 0.34 -3.54 16 17 C -0.53 -15.19 9.48 -34.44 -0.33 -15.51 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 20 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 21 Si 0.88 21.72 24.37 -169.99 -4.14 17.57 16 22 H -0.27 -6.47 6.86 56.52 0.39 -6.08 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 25 C 0.14 1.86 5.64 -3.73 -0.02 1.83 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.68 6.93 -51.93 -0.36 0.32 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 34 H 0.08 0.93 8.07 -51.92 -0.42 0.51 16 35 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.06 1.31 3.25 -51.93 -0.17 1.14 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.11 1.81 7.00 -51.93 -0.36 1.45 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -34.17 326.66 -5.15 -39.32 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.89 Total: -0.85 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 1.05 Total: 6.28 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.24 Total: -33.69 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.34 Total: -33.56 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.17 -5.15 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.569 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds