Wall clock time and date at job start Tue Mar 31 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34631 * 117.00190 * 2 1 4 4 O 1.21514 * 119.99751 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00168 * 179.97438 * 3 2 1 6 6 C 1.46932 * 120.62822 * 0.02562 * 5 3 2 7 7 C 1.53194 * 108.77672 * 233.58855 * 6 5 3 8 8 C 1.53046 * 109.30871 * 305.36738 * 7 6 5 9 9 C 1.53041 * 109.54081 * 61.36673 * 8 7 6 10 10 H 1.09004 * 109.52408 * 58.59520 * 9 8 7 11 11 C 1.50693 * 109.50009 * 178.68045 * 9 8 7 12 12 O 1.20829 * 119.99721 * 359.83794 * 11 9 8 13 13 O 1.34225 * 120.00501 * 179.83765 * 11 9 8 14 14 C 1.45200 * 117.00537 * 180.02562 * 13 11 9 15 15 H 1.09007 * 109.46502 * 329.99927 * 14 13 11 16 16 C 1.52998 * 109.47076 * 89.99893 * 14 13 11 17 17 C 1.50701 * 109.47210 * 210.00283 * 14 13 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27726 * 17 14 13 20 20 N 1.31523 * 119.99908 * 179.72112 * 19 17 14 21 21 Si 1.86800 * 120.00405 * 359.71709 * 19 17 14 22 22 H 1.48500 * 109.47210 * 90.00069 * 21 19 17 23 23 H 1.48504 * 109.47424 * 210.00300 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00390 * 21 19 17 25 25 C 1.46928 * 120.63337 * 180.02562 * 5 3 2 26 26 H 1.09001 * 109.47071 * 60.00141 * 1 2 3 27 27 H 1.08999 * 109.47408 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47689 * 300.00284 * 1 2 3 29 29 H 1.08995 * 109.58557 * 353.37439 * 6 5 3 30 30 H 1.09002 * 109.58257 * 113.65700 * 6 5 3 31 31 H 1.08994 * 109.49574 * 65.31409 * 7 6 5 32 32 H 1.09000 * 109.49731 * 185.38321 * 7 6 5 33 33 H 1.08997 * 109.45890 * 301.34353 * 8 7 6 34 34 H 1.09009 * 109.45504 * 181.38691 * 8 7 6 35 35 H 1.08998 * 109.47156 * 60.00051 * 16 14 13 36 36 H 1.09004 * 109.46783 * 180.02562 * 16 14 13 37 37 H 1.09005 * 109.46870 * 300.00112 * 16 14 13 38 38 H 0.96995 * 120.00181 * 179.97438 * 20 19 17 39 39 H 1.08999 * 109.58113 * 6.61905 * 25 5 3 40 40 H 1.08999 * 109.58351 * 246.19965 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2186 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2229 0.0467 0.0005 7 6 5.2124 0.1126 1.1682 8 6 6.0233 1.4069 1.0718 9 6 5.0816 2.6094 1.1683 10 1 4.5351 2.5695 2.1106 11 6 5.8842 3.8833 1.1059 12 8 7.0868 3.8349 0.9985 13 8 5.2634 5.0716 1.1696 14 6 6.0997 6.2567 1.1030 15 1 7.0780 6.0355 1.5299 16 6 6.2649 6.6829 -0.3572 17 6 5.4524 7.3727 1.8819 18 1 4.5069 7.2079 2.3771 19 6 6.0643 8.6059 1.9571 20 7 5.4967 9.5816 2.6323 21 14 7.6994 8.8912 1.1001 22 1 7.4558 9.3732 -0.2832 23 1 8.4797 9.9091 1.8487 24 1 8.4626 7.6182 1.0535 25 6 4.0906 2.5718 0.0011 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.5758 -0.8225 0.1186 30 1 4.7687 -0.0291 -0.9400 31 1 4.6648 0.0957 2.1104 32 1 5.8857 -0.7434 1.1232 33 1 6.5511 1.4346 0.1186 34 1 6.7453 1.4447 1.8877 35 1 5.2867 6.9040 -0.7840 36 1 6.8931 7.5723 -0.4071 37 1 6.7331 5.8756 -0.9205 38 1 5.9273 10.4491 2.6855 39 1 3.3563 3.3685 0.1194 40 1 4.6276 2.7034 -0.9383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:15 Heat of formation + Delta-G solvation = -187.233554 kcal Electronic energy + Delta-G solvation = -23329.328050 eV Core-core repulsion = 19722.678549 eV Total energy + Delta-G solvation = -3606.649501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.00608 -41.37420 -39.21279 -37.75121 -37.28252 -35.32570 -34.20414 -32.93749 -32.20418 -28.73842 -27.38256 -26.37008 -25.89065 -23.72128 -22.59485 -21.56614 -20.76694 -19.46527 -18.93833 -18.45280 -18.17819 -17.69637 -17.41535 -17.12600 -16.35801 -15.74644 -15.62157 -15.19463 -15.08034 -14.92836 -14.63383 -14.43542 -14.23257 -13.96086 -13.89334 -13.56215 -13.41114 -12.95065 -12.86929 -12.61509 -12.24152 -12.12081 -12.04509 -11.84250 -11.79958 -11.73593 -11.65130 -11.55929 -11.33054 -11.22091 -10.84740 -9.93176 -8.45672 -6.55366 0.92032 1.22943 1.25425 1.30512 1.40543 1.64773 1.87808 2.18892 2.86781 2.88378 3.49412 3.61361 3.66416 3.97053 4.07861 4.10010 4.24178 4.37015 4.38524 4.39940 4.44326 4.51100 4.51895 4.61013 4.71317 4.72173 4.75781 4.86675 4.99714 5.12361 5.19192 5.23298 5.30959 5.32796 5.35513 5.62679 6.11773 6.18205 6.48871 6.82289 7.09586 7.12822 8.70660 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.004074 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.129328 B = 6871.439246 C = 7613.646689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.364 6.364 3 C 0.645 3.355 4 O -0.609 6.609 5 N -0.589 5.589 6 C 0.105 3.895 7 C -0.123 4.123 8 C -0.101 4.101 9 C -0.087 4.087 10 H 0.113 0.887 11 C 0.458 3.542 12 O -0.534 6.534 13 O -0.355 6.355 14 C 0.193 3.807 15 H 0.035 0.965 16 C -0.164 4.164 17 C -0.543 4.543 18 H 0.042 0.958 19 C 0.029 3.971 20 N -0.932 5.932 21 Si 0.944 3.056 22 H -0.250 1.250 23 H -0.283 1.283 24 H -0.254 1.254 25 C 0.143 3.857 26 H 0.058 0.942 27 H 0.142 0.858 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.276 0.724 39 H 0.084 0.916 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 -25.050 -7.511 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.277 6.277 3 C 0.400 3.600 4 O -0.500 6.500 5 N -0.329 5.329 6 C -0.016 4.016 7 C -0.161 4.161 8 C -0.139 4.139 9 C -0.107 4.107 10 H 0.130 0.870 11 C 0.301 3.699 12 O -0.424 6.424 13 O -0.271 6.271 14 C 0.138 3.862 15 H 0.052 0.948 16 C -0.221 4.221 17 C -0.581 4.581 18 H 0.061 0.939 19 C -0.171 4.171 20 N -0.570 5.570 21 Si 0.769 3.231 22 H -0.176 1.176 23 H -0.209 1.209 24 H -0.178 1.178 25 C 0.021 3.979 26 H 0.077 0.923 27 H 0.160 0.840 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.748 -24.579 -7.490 25.841 hybrid contribution 0.317 1.184 0.142 1.234 sum -2.431 -23.395 -7.348 24.642 Atomic orbital electron populations 1.23515 0.72892 1.05745 1.02381 1.86220 1.25559 1.29197 1.86719 1.18228 0.83477 0.82359 0.75978 1.91022 1.65185 1.36471 1.57368 1.46920 1.01772 1.08853 1.75318 1.22127 0.93948 0.85199 1.00284 1.21940 0.98077 0.97441 0.98665 1.21488 0.96633 0.91439 1.04321 1.21497 0.97258 0.89453 1.02468 0.86951 1.24089 0.87509 0.86523 0.71748 1.90579 1.16889 1.88305 1.46658 1.86542 1.43177 1.15485 1.81872 1.20646 0.90601 0.80197 0.94713 0.94776 1.22416 1.02278 1.00724 0.96707 1.20978 1.08369 0.95559 1.33183 0.93940 1.25622 1.01339 0.94713 0.95433 1.69973 1.41087 1.03801 1.42100 0.85925 0.79107 0.78935 0.79139 1.17567 1.20940 1.17842 1.21338 0.94491 0.84597 0.97502 0.92278 0.84045 0.92519 0.87138 0.88946 0.91174 0.86531 0.90203 0.90750 0.91373 0.92521 0.91939 0.91506 0.89766 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -7.18 9.20 -55.40 -0.51 -7.69 16 3 C 0.64 17.00 8.43 129.79 1.09 18.10 16 4 O -0.61 -21.34 15.55 19.80 0.31 -21.04 16 5 N -0.59 -13.04 2.97 -949.31 -2.82 -15.86 16 6 C 0.11 1.39 6.45 86.36 0.56 1.95 16 7 C -0.12 -1.53 6.08 30.67 0.19 -1.35 16 8 C -0.10 -2.00 4.46 30.62 0.14 -1.86 16 9 C -0.09 -2.35 2.78 -11.48 -0.03 -2.39 16 10 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 11 C 0.46 17.43 7.23 71.23 0.52 17.94 16 12 O -0.53 -22.14 15.20 21.95 0.33 -21.80 16 13 O -0.35 -16.46 9.79 -51.37 -0.50 -16.96 16 14 C 0.19 9.82 2.15 29.85 0.06 9.89 16 15 H 0.03 1.82 6.22 -2.38 -0.01 1.80 16 16 C -0.16 -7.26 9.03 71.98 0.65 -6.61 16 17 C -0.54 -32.59 9.48 25.60 0.24 -32.35 16 18 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 19 C 0.03 1.68 5.45 84.65 0.46 2.14 16 20 N -0.93 -57.93 13.96 21.45 0.30 -57.63 16 21 Si 0.94 44.38 24.37 68.60 1.67 46.05 16 22 H -0.25 -10.85 6.86 99.48 0.68 -10.17 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 24 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 25 C 0.14 3.78 5.64 86.35 0.49 4.26 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.11 1.16 6.93 -2.39 -0.02 1.15 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.54 8.13 -2.39 -0.02 1.53 16 34 H 0.07 1.58 8.07 -2.38 -0.02 1.56 16 35 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.06 2.49 3.25 -2.38 -0.01 2.48 16 37 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.08 2.77 7.00 -2.39 -0.02 2.76 16 40 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -77.06 326.66 5.29 -71.76 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.96 Total: 11.55 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 5.56 Total: 11.60 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -2.52 Total: -73.49 kcal Atomic # 8 Polarization: -67.11 SS G_CDS: -0.37 Total: -67.49 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.67 Total: 46.05 kcal Total: -77.06 5.29 -71.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.469 kcal (2) G-P(sol) polarization free energy of solvation -77.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds