Wall clock time and date at job start Tue Mar 31 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34644 * 116.99730 * 2 1 4 4 O 1.21510 * 120.00054 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99728 * 179.97438 * 3 2 1 6 6 C 1.46929 * 120.63528 * 0.02562 * 5 3 2 7 7 C 1.53195 * 108.77469 * 233.58738 * 6 5 3 8 8 C 1.53039 * 109.33708 * 305.37667 * 7 6 5 9 9 C 1.53037 * 109.53939 * 61.32220 * 8 7 6 10 10 H 1.09004 * 109.50353 * 58.64467 * 9 8 7 11 11 C 1.50696 * 109.50024 * 178.71168 * 9 8 7 12 12 O 1.20830 * 119.99784 * 359.93376 * 11 9 8 13 13 O 1.34231 * 120.00448 * 179.97438 * 11 9 8 14 14 C 1.45198 * 117.00230 * 180.02562 * 13 11 9 15 15 H 1.08998 * 109.46913 * 29.99854 * 14 13 11 16 16 C 1.53000 * 109.46967 * 269.99811 * 14 13 11 17 17 C 1.50694 * 109.47115 * 149.99846 * 14 13 11 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 14 13 20 20 N 1.31516 * 119.99913 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99854 * 179.72538 * 19 17 14 22 22 H 1.48504 * 109.47032 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46816 * 120.00323 * 21 19 17 24 24 H 1.48495 * 109.46630 * 240.00111 * 21 19 17 25 25 C 1.46931 * 120.62961 * 180.02562 * 5 3 2 26 26 H 1.09005 * 109.46802 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47512 * 299.99848 * 1 2 3 28 28 H 1.09002 * 109.47377 * 60.00543 * 1 2 3 29 29 H 1.09002 * 109.58509 * 353.37578 * 6 5 3 30 30 H 1.09003 * 109.58661 * 113.65513 * 6 5 3 31 31 H 1.09000 * 109.49692 * 65.31613 * 7 6 5 32 32 H 1.08999 * 109.48955 * 185.37736 * 7 6 5 33 33 H 1.08997 * 109.43371 * 301.31091 * 8 7 6 34 34 H 1.08998 * 109.48068 * 181.35418 * 8 7 6 35 35 H 1.08998 * 109.47223 * 59.99777 * 16 14 13 36 36 H 1.08995 * 109.47095 * 180.02562 * 16 14 13 37 37 H 1.09000 * 109.47156 * 300.00285 * 16 14 13 38 38 H 0.97001 * 119.99646 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.58261 * 6.62142 * 25 5 3 40 40 H 1.08999 * 109.58614 * 246.20422 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2188 -0.0005 5 7 3.4090 1.2702 0.0005 6 6 4.2229 0.0469 0.0005 7 6 5.2124 0.1131 1.1682 8 6 6.0233 1.4074 1.0725 9 6 5.0814 2.6098 1.1682 10 1 4.5350 2.5699 2.1105 11 6 5.8840 3.8837 1.1057 12 8 7.0865 3.8355 0.9971 13 8 5.2633 5.0720 1.1715 14 6 6.0994 6.2572 1.1047 15 1 6.9852 6.0436 0.5065 16 6 6.5238 6.6622 2.5177 17 6 5.3246 7.3835 0.4706 18 1 4.3058 7.2245 0.1496 19 6 5.9165 8.6172 0.3004 20 7 7.1573 8.8107 0.6909 21 14 4.9586 10.0112 -0.4926 22 1 3.5961 9.5374 -0.8456 23 1 4.8563 11.1459 0.4599 24 1 5.6617 10.4583 -1.7217 25 6 4.0904 2.5720 0.0011 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 3.5759 -0.8223 0.1185 30 1 4.7687 -0.0288 -0.9400 31 1 4.6648 0.0961 2.1105 32 1 5.8857 -0.7429 1.1232 33 1 6.5516 1.4348 0.1196 34 1 6.7448 1.4455 1.8887 35 1 7.0842 5.8475 2.9764 36 1 7.1511 7.5521 2.4676 37 1 5.6380 6.8757 3.1160 38 1 7.5735 9.6787 0.5715 39 1 3.3560 3.3687 0.1194 40 1 4.6273 2.7038 -0.9383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:18 Heat of formation + Delta-G solvation = -173.948138 kcal Electronic energy + Delta-G solvation = -23266.918031 eV Core-core repulsion = 19660.844629 eV Total energy + Delta-G solvation = -3606.073402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.82578 -39.76555 -38.03874 -36.32830 -35.71427 -33.29847 -33.05710 -31.58085 -29.48597 -27.95739 -25.42027 -25.30404 -24.56343 -22.30203 -21.21961 -20.14051 -19.37824 -18.25095 -17.16130 -16.89840 -16.58985 -16.52649 -15.59320 -15.37031 -14.86576 -14.55364 -14.24118 -14.14350 -14.01210 -13.54437 -13.20555 -12.90228 -12.72427 -12.26973 -12.09716 -11.99251 -11.50875 -11.28366 -11.14396 -11.08981 -11.03381 -10.90306 -10.81776 -10.70365 -10.53555 -10.34894 -10.26712 -9.65688 -9.54562 -8.91268 -8.88792 -8.48581 -6.17511 -4.24021 1.96704 2.70687 2.94813 3.25431 3.32113 3.37329 3.56271 3.77915 4.34556 4.61436 4.71368 4.75357 4.87296 4.96801 5.05049 5.13262 5.15903 5.26523 5.29670 5.42794 5.61316 5.63934 5.72557 5.75054 5.83833 6.03855 6.18503 6.23150 6.27170 6.63657 6.88532 6.91115 7.15576 7.18834 7.60921 7.72546 7.93189 8.14507 8.16694 8.61676 8.89090 9.41612 10.89990 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019597 B = 0.004240 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.412482 B = 6602.505060 C = 7730.426042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.648 3.352 4 O -0.564 6.564 5 N -0.592 5.592 6 C 0.109 3.891 7 C -0.134 4.134 8 C -0.105 4.105 9 C -0.097 4.097 10 H 0.107 0.893 11 C 0.459 3.541 12 O -0.516 6.516 13 O -0.353 6.353 14 C 0.215 3.785 15 H 0.047 0.953 16 C -0.155 4.155 17 C -0.520 4.520 18 H 0.070 0.930 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.138 3.862 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.015 0.985 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.265 0.735 39 H 0.114 0.886 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -19.885 -0.191 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.287 6.287 3 C 0.402 3.598 4 O -0.453 6.453 5 N -0.333 5.333 6 C -0.013 4.013 7 C -0.172 4.172 8 C -0.143 4.143 9 C -0.117 4.117 10 H 0.125 0.875 11 C 0.301 3.699 12 O -0.406 6.406 13 O -0.269 6.269 14 C 0.162 3.838 15 H 0.065 0.935 16 C -0.213 4.213 17 C -0.558 4.558 18 H 0.089 0.911 19 C -0.140 4.140 20 N -0.528 5.528 21 Si 0.738 3.262 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.208 1.208 25 C 0.017 3.983 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.034 0.966 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.470 -19.403 -0.230 20.793 hybrid contribution -0.344 0.877 -0.265 0.979 sum -7.814 -18.526 -0.495 20.113 Atomic orbital electron populations 1.23183 0.74555 1.03251 1.02874 1.86209 1.24041 1.31147 1.87269 1.18007 0.83106 0.82149 0.76517 1.91041 1.64042 1.34774 1.55392 1.46892 1.01920 1.08470 1.76000 1.21807 0.93898 0.86431 0.99207 1.21953 0.98104 0.98341 0.98771 1.21430 0.97014 0.91549 1.04317 1.21381 0.97007 0.91554 1.01808 0.87513 1.22997 0.87141 0.86483 0.73303 1.90604 1.15958 1.88213 1.45808 1.86510 1.44123 1.15277 1.80962 1.20661 0.90551 0.77694 0.94857 0.93529 1.22164 1.00418 1.01855 0.96843 1.21086 1.00379 0.94256 1.40050 0.91144 1.24887 0.95127 0.98517 0.95440 1.69911 1.12191 1.24070 1.46631 0.86228 0.79994 0.81141 0.78866 1.19388 1.20726 1.20753 1.21565 0.95312 0.83939 0.97509 0.88115 0.91811 0.91846 0.88913 0.90836 0.91200 0.89877 0.90538 0.90342 0.96564 0.88203 0.94399 0.92478 0.86784 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -4.18 9.20 -40.34 -0.37 -4.55 16 3 C 0.65 9.13 8.43 54.05 0.46 9.58 16 4 O -0.56 -9.94 15.54 -19.28 -0.30 -10.24 16 5 N -0.59 -7.45 2.97 -178.57 -0.53 -7.98 16 6 C 0.11 0.99 6.45 -3.71 -0.02 0.96 16 7 C -0.13 -1.15 6.08 -26.61 -0.16 -1.32 16 8 C -0.11 -1.26 4.46 -26.69 -0.12 -1.38 16 9 C -0.10 -1.44 2.78 -91.67 -0.25 -1.69 16 10 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 11 C 0.46 9.34 7.23 36.00 0.26 9.60 16 12 O -0.52 -11.75 15.20 -18.75 -0.29 -12.03 16 13 O -0.35 -8.39 9.79 -39.26 -0.38 -8.78 16 14 C 0.21 5.79 2.56 -27.89 -0.07 5.72 16 15 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 16 C -0.16 -3.97 9.33 37.16 0.35 -3.62 16 17 C -0.52 -14.74 8.90 -34.44 -0.31 -15.05 16 18 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 21 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.14 2.01 5.64 -3.73 -0.02 1.98 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.73 6.93 -51.93 -0.36 0.37 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.11 1.93 7.00 -51.93 -0.36 1.56 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -33.16 333.49 -6.19 -39.35 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.02 Total: -0.29 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 1.08 Total: 7.95 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.10 Total: -32.79 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.34 Total: -35.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.16 -6.19 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.599 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds