Wall clock time and date at job start Tue Mar 31 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34644 * 116.99730 * 2 1 4 4 O 1.21510 * 120.00054 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99728 * 179.97438 * 3 2 1 6 6 C 1.46929 * 120.63528 * 0.02562 * 5 3 2 7 7 C 1.53195 * 108.77469 * 233.58738 * 6 5 3 8 8 C 1.53039 * 109.33708 * 305.37667 * 7 6 5 9 9 C 1.53037 * 109.53939 * 61.32220 * 8 7 6 10 10 H 1.09004 * 109.50353 * 58.64467 * 9 8 7 11 11 C 1.50696 * 109.50024 * 178.71168 * 9 8 7 12 12 O 1.20830 * 119.99784 * 359.93376 * 11 9 8 13 13 O 1.34231 * 120.00448 * 179.97438 * 11 9 8 14 14 C 1.45198 * 117.00230 * 180.02562 * 13 11 9 15 15 H 1.08998 * 109.46913 * 29.99854 * 14 13 11 16 16 C 1.53000 * 109.46967 * 269.99811 * 14 13 11 17 17 C 1.50694 * 109.47115 * 149.99846 * 14 13 11 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 14 13 20 20 N 1.31516 * 119.99913 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99854 * 179.72538 * 19 17 14 22 22 H 1.48504 * 109.47032 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46816 * 120.00323 * 21 19 17 24 24 H 1.48495 * 109.46630 * 240.00111 * 21 19 17 25 25 C 1.46931 * 120.62961 * 180.02562 * 5 3 2 26 26 H 1.09005 * 109.46802 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47512 * 299.99848 * 1 2 3 28 28 H 1.09002 * 109.47377 * 60.00543 * 1 2 3 29 29 H 1.09002 * 109.58509 * 353.37578 * 6 5 3 30 30 H 1.09003 * 109.58661 * 113.65513 * 6 5 3 31 31 H 1.09000 * 109.49692 * 65.31613 * 7 6 5 32 32 H 1.08999 * 109.48955 * 185.37736 * 7 6 5 33 33 H 1.08997 * 109.43371 * 301.31091 * 8 7 6 34 34 H 1.08998 * 109.48068 * 181.35418 * 8 7 6 35 35 H 1.08998 * 109.47223 * 59.99777 * 16 14 13 36 36 H 1.08995 * 109.47095 * 180.02562 * 16 14 13 37 37 H 1.09000 * 109.47156 * 300.00285 * 16 14 13 38 38 H 0.97001 * 119.99646 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.58261 * 6.62142 * 25 5 3 40 40 H 1.08999 * 109.58614 * 246.20422 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2188 -0.0005 5 7 3.4090 1.2702 0.0005 6 6 4.2229 0.0469 0.0005 7 6 5.2124 0.1131 1.1682 8 6 6.0233 1.4074 1.0725 9 6 5.0814 2.6098 1.1682 10 1 4.5350 2.5699 2.1105 11 6 5.8840 3.8837 1.1057 12 8 7.0865 3.8355 0.9971 13 8 5.2633 5.0720 1.1715 14 6 6.0994 6.2572 1.1047 15 1 6.9852 6.0436 0.5065 16 6 6.5238 6.6622 2.5177 17 6 5.3246 7.3835 0.4706 18 1 4.3058 7.2245 0.1496 19 6 5.9165 8.6172 0.3004 20 7 7.1573 8.8107 0.6909 21 14 4.9586 10.0112 -0.4926 22 1 3.5961 9.5374 -0.8456 23 1 4.8563 11.1459 0.4599 24 1 5.6617 10.4583 -1.7217 25 6 4.0904 2.5720 0.0011 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 3.5759 -0.8223 0.1185 30 1 4.7687 -0.0288 -0.9400 31 1 4.6648 0.0961 2.1105 32 1 5.8857 -0.7429 1.1232 33 1 6.5516 1.4348 0.1196 34 1 6.7448 1.4455 1.8887 35 1 7.0842 5.8475 2.9764 36 1 7.1511 7.5521 2.4676 37 1 5.6380 6.8757 3.1160 38 1 7.5735 9.6787 0.5715 39 1 3.3560 3.3687 0.1194 40 1 4.6273 2.7038 -0.9383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:17 Heat of formation + Delta-G solvation = -194.757647 kcal Electronic energy + Delta-G solvation = -23267.820399 eV Core-core repulsion = 19660.844629 eV Total energy + Delta-G solvation = -3606.975770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96793 -41.30405 -39.17503 -37.65562 -37.26463 -35.36186 -34.18987 -32.66915 -31.49753 -28.73072 -27.48281 -26.35459 -25.85112 -23.65330 -22.60141 -21.50332 -20.76344 -19.35732 -18.71799 -18.41204 -18.14771 -17.61775 -17.24293 -16.99124 -16.33699 -15.73522 -15.51819 -15.18298 -15.08772 -14.81498 -14.53448 -14.19550 -13.93871 -13.84762 -13.72685 -13.19378 -13.05167 -12.93872 -12.83782 -12.58000 -12.41210 -12.17893 -12.10460 -12.05310 -11.79731 -11.77148 -11.60510 -11.57000 -11.31500 -10.99414 -10.61716 -9.93282 -8.30634 -6.46956 0.93298 1.31210 1.40576 1.41025 1.55126 1.65311 1.97743 2.39857 2.88886 3.00032 3.52267 3.63677 3.72565 3.97277 4.08773 4.16449 4.37669 4.39169 4.43650 4.50549 4.52741 4.61326 4.72154 4.74090 4.76481 4.81508 4.86517 4.99281 5.11760 5.13413 5.23226 5.32350 5.35284 5.47777 5.61411 5.89978 6.06610 6.18919 6.57801 6.91961 7.12980 7.24853 8.77261 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019597 B = 0.004240 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.412482 B = 6602.505060 C = 7730.426042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.364 6.364 3 C 0.646 3.354 4 O -0.609 6.609 5 N -0.588 5.588 6 C 0.104 3.896 7 C -0.121 4.121 8 C -0.102 4.102 9 C -0.084 4.084 10 H 0.118 0.882 11 C 0.454 3.546 12 O -0.541 6.541 13 O -0.364 6.364 14 C 0.217 3.783 15 H 0.012 0.988 16 C -0.143 4.143 17 C -0.549 4.549 18 H 0.064 0.936 19 C 0.019 3.981 20 N -0.915 5.915 21 Si 0.980 3.020 22 H -0.267 1.267 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.144 3.856 26 H 0.142 0.858 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.271 0.729 39 H 0.085 0.915 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 -21.761 -0.326 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.277 6.277 3 C 0.401 3.599 4 O -0.500 6.500 5 N -0.328 5.328 6 C -0.016 4.016 7 C -0.159 4.159 8 C -0.140 4.140 9 C -0.104 4.104 10 H 0.136 0.864 11 C 0.298 3.702 12 O -0.432 6.432 13 O -0.280 6.280 14 C 0.164 3.836 15 H 0.029 0.971 16 C -0.200 4.200 17 C -0.586 4.586 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.553 5.553 21 Si 0.804 3.196 22 H -0.191 1.191 23 H -0.195 1.195 24 H -0.199 1.199 25 C 0.022 3.978 26 H 0.160 0.840 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.294 -21.342 -0.357 22.900 hybrid contribution -0.072 1.362 -0.226 1.383 sum -8.366 -19.980 -0.584 21.669 Atomic orbital electron populations 1.23521 0.72864 1.05757 1.02402 1.86225 1.25590 1.29122 1.86731 1.18200 0.83394 0.82388 0.75966 1.91014 1.65151 1.36460 1.57383 1.46915 1.01850 1.08742 1.75308 1.22129 0.94005 0.85262 1.00222 1.21931 0.98011 0.97239 0.98748 1.21480 0.96737 0.91735 1.04035 1.21471 0.97075 0.89412 1.02411 0.86409 1.24109 0.87441 0.86837 0.71817 1.90583 1.17362 1.88442 1.46812 1.86511 1.43969 1.15893 1.81630 1.20357 0.89578 0.78844 0.94836 0.97067 1.21989 1.00370 1.01351 0.96338 1.21323 1.00397 0.95463 1.41441 0.91801 1.25787 0.96043 1.00809 0.95477 1.70013 1.13480 1.25005 1.46848 0.85172 0.78519 0.77780 0.78172 1.19119 1.19529 1.19861 1.21290 0.94524 0.84632 0.97398 0.84031 0.92355 0.92380 0.86880 0.89342 0.90765 0.86579 0.90898 0.90689 0.95543 0.89956 0.93752 0.91929 0.89660 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 10.56 113.37 1.20 1.90 16 2 O -0.36 -7.36 9.20 -55.53 -0.51 -7.87 16 3 C 0.65 17.58 8.43 129.79 1.09 18.68 16 4 O -0.61 -21.73 15.54 19.81 0.31 -21.42 16 5 N -0.59 -13.96 2.97 -949.29 -2.82 -16.78 16 6 C 0.10 1.55 6.45 86.36 0.56 2.10 16 7 C -0.12 -1.67 6.08 30.67 0.19 -1.48 16 8 C -0.10 -2.26 4.46 30.62 0.14 -2.12 16 9 C -0.08 -2.44 2.78 -11.48 -0.03 -2.47 16 10 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 11 C 0.45 18.91 7.23 71.23 0.52 19.42 16 12 O -0.54 -25.25 15.20 21.95 0.33 -24.92 16 13 O -0.36 -17.91 9.79 -51.43 -0.50 -18.42 16 14 C 0.22 12.14 2.56 29.85 0.08 12.21 16 15 H 0.01 0.71 7.16 -2.39 -0.02 0.69 16 16 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 17 C -0.55 -31.95 8.90 25.60 0.23 -31.72 16 18 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 19 C 0.02 1.04 5.30 84.66 0.45 1.49 16 20 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 21 Si 0.98 43.88 29.54 68.60 2.03 45.90 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 C 0.14 4.19 5.64 86.35 0.49 4.68 16 26 H 0.14 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 1.30 6.93 -2.39 -0.02 1.28 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 34 H 0.07 1.74 8.07 -2.39 -0.02 1.72 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 4.60 6.07 -2.39 -0.01 4.59 16 37 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.08 3.01 7.00 -2.39 -0.02 2.99 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -74.02 333.49 5.67 -68.35 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.03 Total: 12.06 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 5.57 Total: 15.88 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -2.58 Total: -69.57 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -0.37 Total: -72.62 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -74.02 5.67 -68.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.406 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds