Wall clock time and date at job start Tue Mar 31 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34640 * 117.00137 * 2 1 4 4 O 1.21507 * 119.99843 * 0.02562 * 3 2 1 5 5 N 1.34769 * 119.99873 * 179.97438 * 3 2 1 6 6 C 1.46929 * 120.63490 * 0.02840 * 5 3 2 7 7 C 1.53186 * 108.77572 * 126.36384 * 6 5 3 8 8 C 1.53046 * 109.31370 * 54.63665 * 7 6 5 9 9 C 1.53036 * 109.53774 * 298.63453 * 8 7 6 10 10 H 1.09005 * 109.52309 * 301.39533 * 9 8 7 11 11 C 1.50698 * 109.49636 * 181.31402 * 9 8 7 12 12 O 1.20825 * 120.00098 * 0.16534 * 11 9 8 13 13 O 1.34236 * 119.99933 * 180.16058 * 11 9 8 14 14 C 1.45202 * 117.00026 * 180.02562 * 13 11 9 15 15 H 1.08997 * 109.46770 * 330.00388 * 14 13 11 16 16 C 1.53007 * 109.46838 * 89.99947 * 14 13 11 17 17 C 1.50700 * 109.47091 * 210.00038 * 14 13 11 18 18 H 1.07999 * 119.99654 * 354.36439 * 17 14 13 19 19 C 1.37878 * 119.99672 * 174.36150 * 17 14 13 20 20 N 1.31519 * 119.99316 * 156.84718 * 19 17 14 21 21 Si 1.86792 * 120.00200 * 336.84796 * 19 17 14 22 22 H 1.48503 * 109.47133 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47463 * 60.00099 * 21 19 17 24 24 H 1.48498 * 109.47074 * 299.99863 * 21 19 17 25 25 C 1.46926 * 120.63044 * 180.02562 * 5 3 2 26 26 H 1.08989 * 109.47256 * 59.99882 * 1 2 3 27 27 H 1.09002 * 109.46805 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46909 * 299.99660 * 1 2 3 29 29 H 1.08997 * 109.58571 * 246.15055 * 6 5 3 30 30 H 1.09002 * 109.58600 * 6.43690 * 6 5 3 31 31 H 1.08998 * 109.50157 * 174.58576 * 7 6 5 32 32 H 1.08998 * 109.50164 * 294.65424 * 7 6 5 33 33 H 1.09000 * 109.46209 * 178.60784 * 8 7 6 34 34 H 1.09002 * 109.45701 * 58.65328 * 8 7 6 35 35 H 1.08995 * 109.47472 * 293.10260 * 16 14 13 36 36 H 1.08996 * 109.47302 * 53.10556 * 16 14 13 37 37 H 1.08996 * 109.46393 * 173.10202 * 16 14 13 38 38 H 0.96995 * 119.99934 * 354.92416 * 20 19 17 39 39 H 1.08999 * 109.58759 * 113.84494 * 25 5 3 40 40 H 1.09006 * 109.70051 * 353.48950 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.2229 0.0468 0.0005 7 6 5.2124 0.1129 -1.1671 8 6 6.0234 1.4072 -1.0706 9 6 5.0816 2.6096 -1.1670 10 1 4.5353 2.5698 -2.1094 11 6 5.8843 3.8835 -1.1043 12 8 7.0868 3.8352 -0.9969 13 8 5.2634 5.0719 -1.1680 14 6 6.0998 6.2570 -1.1023 15 1 6.9869 6.0430 -0.5062 16 6 6.5210 6.6629 -2.5161 17 6 5.3264 7.3830 -0.4657 18 1 4.2815 7.2524 -0.2261 19 6 5.9529 8.5797 -0.1893 20 7 5.2442 9.6815 -0.0739 21 14 7.8081 8.6359 0.0211 22 1 8.2316 10.0298 0.3093 23 1 8.4624 8.1685 -1.2274 24 1 8.2054 7.7543 1.1481 25 6 4.0906 2.5718 0.0011 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.7706 -0.0278 0.9399 30 1 3.5757 -0.8226 -0.1152 31 1 5.8862 -0.7427 -1.1219 32 1 4.6650 0.0954 -2.1094 33 1 6.7454 1.4450 -1.8863 34 1 6.5512 1.4348 -0.1173 35 1 7.1821 5.9020 -2.9308 36 1 5.6363 6.7579 -3.1456 37 1 7.0447 7.6181 -2.4789 38 1 4.2915 9.6667 -0.2554 39 1 4.6275 2.7027 0.9406 40 1 3.3577 3.3703 -0.1153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:20 Heat of formation + Delta-G solvation = -173.306533 kcal Electronic energy + Delta-G solvation = -23331.565618 eV Core-core repulsion = 19725.520038 eV Total energy + Delta-G solvation = -3606.045580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.88239 -39.92143 -38.13261 -36.38223 -35.89205 -33.32277 -33.10780 -31.68165 -30.24023 -27.99170 -25.47788 -25.05174 -24.54241 -22.32984 -21.15882 -20.13203 -19.47701 -18.33974 -17.66142 -17.19261 -16.87351 -16.61599 -15.83148 -15.53220 -14.91191 -14.35243 -14.32048 -14.20547 -13.75303 -13.64291 -13.22467 -12.96168 -12.82438 -12.75500 -12.30107 -12.17645 -11.85887 -11.53484 -11.45054 -11.19419 -11.16622 -10.93235 -10.78838 -10.58954 -10.57241 -10.16266 -10.06185 -9.77852 -9.73605 -9.00026 -8.96151 -8.31386 -6.64842 -4.22416 1.92051 2.65374 2.79371 3.34142 3.39413 3.40765 3.56857 3.72349 4.39460 4.53145 4.63779 4.68521 4.78638 4.94605 5.03080 5.05501 5.06752 5.21650 5.25163 5.34821 5.51360 5.57150 5.62405 5.66101 5.76148 5.96158 6.11927 6.15824 6.18602 6.22768 6.44660 6.48586 6.69564 7.14105 7.14681 7.35760 7.83171 8.13061 8.26173 8.44094 8.85446 9.42606 10.75922 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022639 B = 0.004240 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.490558 B = 6602.639164 C = 7461.911714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.648 3.352 4 O -0.564 6.564 5 N -0.592 5.592 6 C 0.109 3.891 7 C -0.134 4.134 8 C -0.105 4.105 9 C -0.097 4.097 10 H 0.108 0.892 11 C 0.458 3.542 12 O -0.518 6.518 13 O -0.341 6.341 14 C 0.197 3.803 15 H 0.037 0.963 16 C -0.164 4.164 17 C -0.615 4.615 18 H 0.070 0.930 19 C 0.046 3.954 20 N -0.886 5.886 21 Si 1.030 2.970 22 H -0.279 1.279 23 H -0.274 1.274 24 H -0.279 1.279 25 C 0.138 3.862 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.274 0.726 39 H 0.081 0.919 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 -22.708 -1.433 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.402 3.598 4 O -0.452 6.452 5 N -0.333 5.333 6 C -0.014 4.014 7 C -0.172 4.172 8 C -0.143 4.143 9 C -0.117 4.117 10 H 0.126 0.874 11 C 0.300 3.700 12 O -0.408 6.408 13 O -0.256 6.256 14 C 0.143 3.857 15 H 0.055 0.945 16 C -0.222 4.222 17 C -0.652 4.652 18 H 0.089 0.911 19 C -0.161 4.161 20 N -0.518 5.518 21 Si 0.856 3.144 22 H -0.204 1.204 23 H -0.200 1.200 24 H -0.205 1.205 25 C 0.016 3.984 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.266 -21.338 -1.007 21.481 hybrid contribution -1.307 -0.914 -0.467 1.662 sum -3.573 -22.252 -1.474 22.585 Atomic orbital electron populations 1.23190 0.74492 1.03284 1.02906 1.86206 1.24086 1.31099 1.87253 1.18005 0.83087 0.82175 0.76510 1.91048 1.64030 1.34783 1.55293 1.46869 1.01951 1.08395 1.76094 1.21809 0.93898 0.86450 0.99195 1.21952 0.98112 0.98276 0.98831 1.21440 0.96991 0.91551 1.04327 1.21404 0.97045 0.91289 1.01972 0.87371 1.23139 0.87210 0.86572 0.73051 1.90592 1.15956 1.88218 1.45990 1.86580 1.43233 1.14799 1.81022 1.20888 0.91234 0.79462 0.94093 0.94501 1.22497 1.00230 1.00757 0.98730 1.21869 0.99327 0.97171 1.46819 0.91141 1.25615 1.06541 0.90958 0.93021 1.70846 1.09852 1.27191 1.43872 0.84246 0.75613 0.76660 0.77861 1.20389 1.20031 1.20469 1.21566 0.95315 0.84086 0.97408 0.91800 0.88073 0.91816 0.90828 0.88828 0.89812 0.91168 0.90327 0.90492 0.95125 0.92709 0.91265 0.91616 0.90076 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -4.15 9.20 -40.33 -0.37 -4.52 16 3 C 0.65 9.10 8.43 54.05 0.46 9.56 16 4 O -0.56 -9.99 15.55 -19.28 -0.30 -10.28 16 5 N -0.59 -7.36 2.97 -178.54 -0.53 -7.89 16 6 C 0.11 0.95 6.45 -3.71 -0.02 0.93 16 7 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 8 C -0.11 -1.19 4.46 -26.69 -0.12 -1.31 16 9 C -0.10 -1.38 2.78 -91.63 -0.25 -1.64 16 10 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 11 C 0.46 8.93 7.23 36.00 0.26 9.19 16 12 O -0.52 -11.08 15.20 -18.75 -0.28 -11.36 16 13 O -0.34 -7.90 9.79 -39.27 -0.38 -8.29 16 14 C 0.20 5.03 2.15 -27.88 -0.06 4.97 16 15 H 0.04 0.97 5.73 -51.93 -0.30 0.68 16 16 C -0.16 -3.82 9.27 37.16 0.34 -3.48 16 17 C -0.61 -17.75 9.11 -34.44 -0.31 -18.07 16 18 H 0.07 2.20 8.06 -52.49 -0.42 1.77 16 19 C 0.05 1.33 5.19 -17.82 -0.09 1.23 16 20 N -0.89 -26.79 13.70 55.43 0.76 -26.04 16 21 Si 1.03 25.05 26.44 -169.99 -4.50 20.55 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.23 6.15 56.52 0.35 -5.89 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.14 1.98 5.64 -3.69 -0.02 1.96 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.71 6.93 -51.93 -0.36 0.35 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.08 0.90 8.13 -51.93 -0.42 0.47 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.62 5.48 -51.93 -0.28 1.34 16 38 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.11 1.94 7.01 -51.93 -0.36 1.57 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -34.00 330.11 -5.55 -39.55 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.00 Total: -0.31 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 1.08 Total: 3.61 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.23 Total: -33.93 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.34 Total: -34.46 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.50 Total: 20.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.00 -5.55 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.754 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds