Wall clock time and date at job start Tue Mar 31 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34640 * 117.00137 * 2 1 4 4 O 1.21507 * 119.99843 * 0.02562 * 3 2 1 5 5 N 1.34769 * 119.99873 * 179.97438 * 3 2 1 6 6 C 1.46929 * 120.63490 * 0.02840 * 5 3 2 7 7 C 1.53186 * 108.77572 * 126.36384 * 6 5 3 8 8 C 1.53046 * 109.31370 * 54.63665 * 7 6 5 9 9 C 1.53036 * 109.53774 * 298.63453 * 8 7 6 10 10 H 1.09005 * 109.52309 * 301.39533 * 9 8 7 11 11 C 1.50698 * 109.49636 * 181.31402 * 9 8 7 12 12 O 1.20825 * 120.00098 * 0.16534 * 11 9 8 13 13 O 1.34236 * 119.99933 * 180.16058 * 11 9 8 14 14 C 1.45202 * 117.00026 * 180.02562 * 13 11 9 15 15 H 1.08997 * 109.46770 * 330.00388 * 14 13 11 16 16 C 1.53007 * 109.46838 * 89.99947 * 14 13 11 17 17 C 1.50700 * 109.47091 * 210.00038 * 14 13 11 18 18 H 1.07999 * 119.99654 * 354.36439 * 17 14 13 19 19 C 1.37878 * 119.99672 * 174.36150 * 17 14 13 20 20 N 1.31519 * 119.99316 * 156.84718 * 19 17 14 21 21 Si 1.86792 * 120.00200 * 336.84796 * 19 17 14 22 22 H 1.48503 * 109.47133 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47463 * 60.00099 * 21 19 17 24 24 H 1.48498 * 109.47074 * 299.99863 * 21 19 17 25 25 C 1.46926 * 120.63044 * 180.02562 * 5 3 2 26 26 H 1.08989 * 109.47256 * 59.99882 * 1 2 3 27 27 H 1.09002 * 109.46805 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46909 * 299.99660 * 1 2 3 29 29 H 1.08997 * 109.58571 * 246.15055 * 6 5 3 30 30 H 1.09002 * 109.58600 * 6.43690 * 6 5 3 31 31 H 1.08998 * 109.50157 * 174.58576 * 7 6 5 32 32 H 1.08998 * 109.50164 * 294.65424 * 7 6 5 33 33 H 1.09000 * 109.46209 * 178.60784 * 8 7 6 34 34 H 1.09002 * 109.45701 * 58.65328 * 8 7 6 35 35 H 1.08995 * 109.47472 * 293.10260 * 16 14 13 36 36 H 1.08996 * 109.47302 * 53.10556 * 16 14 13 37 37 H 1.08996 * 109.46393 * 173.10202 * 16 14 13 38 38 H 0.96995 * 119.99934 * 354.92416 * 20 19 17 39 39 H 1.08999 * 109.58759 * 113.84494 * 25 5 3 40 40 H 1.09006 * 109.70051 * 353.48950 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.2229 0.0468 0.0005 7 6 5.2124 0.1129 -1.1671 8 6 6.0234 1.4072 -1.0706 9 6 5.0816 2.6096 -1.1670 10 1 4.5353 2.5698 -2.1094 11 6 5.8843 3.8835 -1.1043 12 8 7.0868 3.8352 -0.9969 13 8 5.2634 5.0719 -1.1680 14 6 6.0998 6.2570 -1.1023 15 1 6.9869 6.0430 -0.5062 16 6 6.5210 6.6629 -2.5161 17 6 5.3264 7.3830 -0.4657 18 1 4.2815 7.2524 -0.2261 19 6 5.9529 8.5797 -0.1893 20 7 5.2442 9.6815 -0.0739 21 14 7.8081 8.6359 0.0211 22 1 8.2316 10.0298 0.3093 23 1 8.4624 8.1685 -1.2274 24 1 8.2054 7.7543 1.1481 25 6 4.0906 2.5718 0.0011 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.7706 -0.0278 0.9399 30 1 3.5757 -0.8226 -0.1152 31 1 5.8862 -0.7427 -1.1219 32 1 4.6650 0.0954 -2.1094 33 1 6.7454 1.4450 -1.8863 34 1 6.5512 1.4348 -0.1173 35 1 7.1821 5.9020 -2.9308 36 1 5.6363 6.7579 -3.1456 37 1 7.0447 7.6181 -2.4789 38 1 4.2915 9.6667 -0.2554 39 1 4.6275 2.7027 0.9406 40 1 3.3577 3.3703 -0.1153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:20 Heat of formation + Delta-G solvation = -196.019005 kcal Electronic energy + Delta-G solvation = -23332.550505 eV Core-core repulsion = 19725.520038 eV Total energy + Delta-G solvation = -3607.030467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02520 -41.38590 -39.23102 -37.74240 -37.31419 -35.40181 -34.23242 -32.85890 -32.05184 -28.76937 -27.09332 -26.37441 -25.86626 -23.56873 -22.52670 -21.50500 -20.82616 -19.89613 -19.28106 -18.50286 -18.20853 -17.66023 -17.34567 -16.97802 -15.89484 -15.73144 -15.55171 -15.22086 -15.11639 -14.99854 -14.74457 -14.45817 -14.22191 -13.93724 -13.77122 -13.63814 -13.30204 -12.98144 -12.62101 -12.53423 -12.15695 -12.13938 -12.07435 -11.87320 -11.83567 -11.80716 -11.65065 -11.59400 -11.37634 -11.10544 -10.55437 -9.96846 -8.96813 -6.55538 0.88208 1.23929 1.40921 1.45808 1.61050 1.66793 1.90378 2.36615 2.83788 2.85233 3.47937 3.58495 3.65867 3.95137 4.05938 4.07768 4.26108 4.34399 4.35668 4.39740 4.49483 4.50894 4.57967 4.59583 4.69059 4.71034 4.83158 4.85024 4.97600 5.10156 5.19595 5.26639 5.29326 5.33607 5.45008 5.82845 5.91751 6.14935 6.36757 6.82846 7.09146 7.19498 8.43100 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022639 B = 0.004240 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.490558 B = 6602.639164 C = 7461.911714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.363 6.363 3 C 0.645 3.355 4 O -0.611 6.611 5 N -0.588 5.588 6 C 0.104 3.896 7 C -0.122 4.122 8 C -0.101 4.101 9 C -0.085 4.085 10 H 0.118 0.882 11 C 0.455 3.545 12 O -0.533 6.533 13 O -0.361 6.361 14 C 0.196 3.804 15 H 0.034 0.966 16 C -0.158 4.158 17 C -0.628 4.628 18 H 0.028 0.972 19 C 0.004 3.996 20 N -0.910 5.910 21 Si 1.069 2.931 22 H -0.272 1.272 23 H -0.245 1.245 24 H -0.267 1.267 25 C 0.142 3.858 26 H 0.057 0.943 27 H 0.143 0.857 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.260 0.740 39 H 0.083 0.917 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -25.816 -1.960 25.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.276 6.276 3 C 0.400 3.600 4 O -0.502 6.502 5 N -0.328 5.328 6 C -0.017 4.017 7 C -0.160 4.160 8 C -0.139 4.139 9 C -0.105 4.105 10 H 0.136 0.864 11 C 0.299 3.701 12 O -0.423 6.423 13 O -0.277 6.277 14 C 0.142 3.858 15 H 0.052 0.948 16 C -0.215 4.215 17 C -0.665 4.665 18 H 0.047 0.953 19 C -0.197 4.197 20 N -0.543 5.543 21 Si 0.888 3.112 22 H -0.197 1.197 23 H -0.169 1.169 24 H -0.192 1.192 25 C 0.020 3.980 26 H 0.076 0.924 27 H 0.161 0.839 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.601 -24.513 -1.545 24.569 hybrid contribution -1.959 -0.043 -0.272 1.979 sum -2.560 -24.557 -1.817 24.757 Atomic orbital electron populations 1.23525 0.72864 1.05807 1.02354 1.86223 1.25579 1.29050 1.86715 1.18227 0.83466 0.82375 0.75966 1.91021 1.65229 1.36564 1.57430 1.46913 1.01797 1.08777 1.75296 1.22150 0.94029 0.85128 1.00386 1.21936 0.98002 0.97445 0.98607 1.21494 0.96664 0.91393 1.04331 1.21504 0.97135 0.89617 1.02226 0.86423 1.24103 0.87563 0.86621 0.71822 1.90568 1.16833 1.88308 1.46617 1.86574 1.43611 1.15697 1.81797 1.20646 0.90488 0.79611 0.95064 0.94834 1.22374 1.00678 1.01328 0.97153 1.21975 0.97781 0.99188 1.47599 0.95325 1.27022 1.10589 0.90346 0.91770 1.70955 1.09267 1.28304 1.45766 0.83764 0.70462 0.77414 0.79563 1.19667 1.16884 1.19226 1.21303 0.94537 0.84567 0.97621 0.92406 0.83901 0.92464 0.89279 0.86951 0.86424 0.90833 0.90207 0.90639 0.92780 0.92744 0.91402 0.93070 0.89837 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -7.41 9.20 -55.50 -0.51 -7.93 16 3 C 0.64 17.79 8.43 129.79 1.09 18.88 16 4 O -0.61 -22.37 15.55 19.82 0.31 -22.06 16 5 N -0.59 -13.85 2.97 -949.19 -2.82 -16.67 16 6 C 0.10 1.46 6.45 86.36 0.56 2.02 16 7 C -0.12 -1.51 6.08 30.67 0.19 -1.33 16 8 C -0.10 -2.01 4.46 30.62 0.14 -1.87 16 9 C -0.08 -2.33 2.78 -11.45 -0.03 -2.37 16 10 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 11 C 0.46 17.56 7.23 71.24 0.52 18.08 16 12 O -0.53 -22.14 15.20 21.97 0.33 -21.81 16 13 O -0.36 -17.04 9.79 -51.47 -0.50 -17.54 16 14 C 0.20 10.07 2.15 29.85 0.06 10.13 16 15 H 0.03 1.75 5.73 -2.39 -0.01 1.74 16 16 C -0.16 -7.17 9.27 71.98 0.67 -6.50 16 17 C -0.63 -37.52 9.11 25.60 0.23 -37.28 16 18 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 19 C 0.00 0.26 5.19 84.65 0.44 0.70 16 20 N -0.91 -56.56 13.70 21.45 0.29 -56.26 16 21 Si 1.07 49.76 26.44 68.60 1.81 51.58 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.24 -10.21 6.15 99.48 0.61 -9.60 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 C 0.14 4.10 5.64 86.38 0.49 4.58 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 1.24 6.93 -2.39 -0.02 1.23 16 31 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.61 8.07 -2.39 -0.02 1.59 16 34 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 3.07 5.48 -2.39 -0.01 3.05 16 38 H 0.26 16.41 8.73 -92.71 -0.81 15.60 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.08 2.87 7.01 -2.38 -0.02 2.85 16 Total: -1.00 -76.70 330.11 5.36 -71.34 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.90 Total: 12.39 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.55 Total: 6.96 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -2.53 Total: -72.93 kcal Atomic # 8 Polarization: -68.96 SS G_CDS: -0.37 Total: -69.34 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 1.81 Total: 51.58 kcal Total: -76.70 5.36 -71.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.682 kcal (2) G-P(sol) polarization free energy of solvation -76.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds