Wall clock time and date at job start Tue Mar 31 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34634 * 116.99896 * 2 1 4 4 O 1.21512 * 120.00215 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99691 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63434 * 0.02562 * 5 3 2 7 7 C 1.53194 * 108.78054 * 126.36452 * 6 5 3 8 8 C 1.53041 * 109.30804 * 54.63579 * 7 6 5 9 9 C 1.53040 * 109.54104 * 298.63430 * 8 7 6 10 10 H 1.08996 * 109.52434 * 301.40056 * 9 8 7 11 11 C 1.50701 * 109.49918 * 181.31879 * 9 8 7 12 12 O 1.20829 * 119.99658 * 0.16153 * 11 9 8 13 13 O 1.34228 * 120.00046 * 180.16185 * 11 9 8 14 14 C 1.45199 * 116.99847 * 179.97438 * 13 11 9 15 15 H 1.08995 * 109.47228 * 30.00663 * 14 13 11 16 16 C 1.53000 * 109.47472 * 269.99816 * 14 13 11 17 17 C 1.50702 * 109.46562 * 150.00038 * 14 13 11 18 18 H 1.07996 * 120.00374 * 5.35488 * 17 14 13 19 19 C 1.37876 * 119.99749 * 185.34882 * 17 14 13 20 20 N 1.31518 * 120.00343 * 5.14958 * 19 17 14 21 21 Si 1.86807 * 120.00265 * 185.14783 * 19 17 14 22 22 H 1.48494 * 109.47145 * 84.99953 * 21 19 17 23 23 H 1.48497 * 109.47300 * 205.00262 * 21 19 17 24 24 H 1.48503 * 109.46685 * 325.00509 * 21 19 17 25 25 C 1.46932 * 120.62984 * 179.97438 * 5 3 2 26 26 H 1.08997 * 109.47017 * 59.99851 * 1 2 3 27 27 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46857 * 300.00300 * 1 2 3 29 29 H 1.08997 * 109.58375 * 246.15982 * 6 5 3 30 30 H 1.09011 * 109.58337 * 6.43684 * 6 5 3 31 31 H 1.08997 * 109.49715 * 174.58344 * 7 6 5 32 32 H 1.08995 * 109.49505 * 294.65615 * 7 6 5 33 33 H 1.09003 * 109.46011 * 178.61585 * 8 7 6 34 34 H 1.09003 * 109.46051 * 58.65930 * 8 7 6 35 35 H 1.08998 * 109.46491 * 54.97799 * 16 14 13 36 36 H 1.09004 * 109.46982 * 174.97196 * 16 14 13 37 37 H 1.08998 * 109.47372 * 294.98005 * 16 14 13 38 38 H 0.96999 * 120.00186 * 179.97438 * 20 19 17 39 39 H 1.08994 * 109.58287 * 113.84739 * 25 5 3 40 40 H 1.09000 * 109.70415 * 353.49008 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2229 0.0468 0.0005 7 6 5.2126 0.1127 -1.1670 8 6 6.0235 1.4070 -1.0705 9 6 5.0818 2.6095 -1.1671 10 1 4.5355 2.5697 -2.1094 11 6 5.8845 3.8834 -1.1045 12 8 7.0870 3.8350 -0.9969 13 8 5.2636 5.0718 -1.1682 14 6 6.0999 6.2568 -1.1014 15 1 7.0781 6.0357 -1.5283 16 6 6.2650 6.6830 0.3587 17 6 5.4526 7.3728 -1.8803 18 1 4.4682 7.2361 -2.3030 19 6 6.1171 8.5685 -2.0532 20 7 7.3542 8.7009 -1.6269 21 14 5.2603 10.0004 -2.8930 22 1 4.4600 10.7531 -1.8940 23 1 6.2762 10.9015 -3.4940 24 1 4.3637 9.4846 -3.9585 25 6 4.0906 2.5718 0.0000 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.7705 -0.0277 0.9400 30 1 3.5756 -0.8227 -0.1151 31 1 5.8863 -0.7429 -1.1216 32 1 4.6651 0.0953 -2.1093 33 1 6.7455 1.4449 -1.8863 34 1 6.5513 1.4347 -0.1172 35 1 6.6503 5.8455 0.9402 36 1 6.9638 7.5176 0.4168 37 1 5.2987 6.9895 0.7593 38 1 7.8218 9.5420 -1.7488 39 1 4.6275 2.7035 0.9393 40 1 3.3579 3.3702 -0.1172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:23 Heat of formation + Delta-G solvation = -175.271376 kcal Electronic energy + Delta-G solvation = -23254.703154 eV Core-core repulsion = 19648.572372 eV Total energy + Delta-G solvation = -3606.130782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84071 -39.76863 -38.04717 -36.34216 -35.71095 -33.25915 -33.05339 -31.58983 -29.59293 -27.96915 -25.45335 -25.25015 -24.57275 -22.32233 -21.22857 -20.20476 -19.32783 -18.27317 -17.17236 -16.91016 -16.60559 -16.54774 -15.55739 -15.37613 -14.87554 -14.54957 -14.27431 -14.14752 -13.98662 -13.57991 -13.19438 -12.91162 -12.76170 -12.24338 -12.22169 -11.84491 -11.62516 -11.24505 -11.23640 -11.09412 -10.99842 -10.91724 -10.81385 -10.71392 -10.55414 -10.42936 -10.30123 -9.67286 -9.49727 -8.92727 -8.92467 -8.48744 -6.18469 -4.23317 1.95103 2.69065 2.94914 3.27207 3.31913 3.35006 3.55682 3.76587 4.34713 4.60884 4.70742 4.75045 4.86140 4.95741 5.03913 5.11754 5.16132 5.25633 5.28761 5.41863 5.60910 5.62371 5.71599 5.72852 5.83194 6.04234 6.16912 6.22319 6.25806 6.60840 6.83220 6.86717 7.13408 7.16912 7.58013 7.67433 7.87746 8.12705 8.14842 8.61688 8.89769 9.41679 10.90835 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.004007 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.662008 B = 6985.395523 C = 7864.367040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.648 3.352 4 O -0.565 6.565 5 N -0.592 5.592 6 C 0.109 3.891 7 C -0.134 4.134 8 C -0.105 4.105 9 C -0.098 4.098 10 H 0.108 0.892 11 C 0.459 3.541 12 O -0.516 6.516 13 O -0.353 6.353 14 C 0.213 3.787 15 H 0.052 0.948 16 C -0.148 4.148 17 C -0.523 4.523 18 H 0.069 0.931 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.910 3.090 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.139 3.861 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.018 0.982 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.266 0.734 39 H 0.079 0.921 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.161 -19.771 3.408 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.402 3.598 4 O -0.453 6.453 5 N -0.333 5.333 6 C -0.013 4.013 7 C -0.172 4.172 8 C -0.143 4.143 9 C -0.118 4.118 10 H 0.126 0.874 11 C 0.301 3.699 12 O -0.405 6.405 13 O -0.269 6.269 14 C 0.161 3.839 15 H 0.070 0.930 16 C -0.206 4.206 17 C -0.561 4.561 18 H 0.087 0.913 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.737 3.263 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.196 1.196 25 C 0.017 3.983 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.939 -19.298 3.457 21.151 hybrid contribution -0.304 0.918 -0.431 1.058 sum -8.243 -18.380 3.027 20.370 Atomic orbital electron populations 1.23186 0.74528 1.03271 1.02876 1.86209 1.24058 1.31128 1.87248 1.18004 0.83097 0.82157 0.76493 1.91039 1.64053 1.34782 1.55422 1.46885 1.01929 1.08455 1.76008 1.21810 0.93893 0.86410 0.99214 1.21955 0.98098 0.98356 0.98791 1.21432 0.97034 0.91534 1.04304 1.21385 0.97006 0.91571 1.01848 0.87398 1.22992 0.87138 0.86467 0.73318 1.90607 1.15933 1.88214 1.45769 1.86505 1.44115 1.15275 1.80999 1.20657 0.91167 0.77778 0.94298 0.93011 1.22086 1.01155 1.00584 0.96768 1.21002 1.03776 0.96775 1.34513 0.91256 1.24896 0.94711 0.98698 0.95547 1.69959 1.10064 1.26195 1.46427 0.86319 0.79089 0.81342 0.79584 1.20233 1.21051 1.19649 1.21543 0.95282 0.84009 0.97441 0.91795 0.88099 0.91849 0.90872 0.88881 0.89866 0.91152 0.90268 0.90596 0.96277 0.89768 0.93986 0.92408 0.90268 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -4.12 9.20 -40.31 -0.37 -4.49 16 3 C 0.65 8.99 8.43 54.06 0.46 9.45 16 4 O -0.56 -9.79 15.55 -19.28 -0.30 -10.09 16 5 N -0.59 -7.32 2.97 -178.58 -0.53 -7.85 16 6 C 0.11 0.97 6.45 -3.71 -0.02 0.95 16 7 C -0.13 -1.16 6.08 -26.61 -0.16 -1.32 16 8 C -0.11 -1.26 4.46 -26.69 -0.12 -1.38 16 9 C -0.10 -1.45 2.78 -91.67 -0.25 -1.70 16 10 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 11 C 0.46 9.34 7.23 36.01 0.26 9.60 16 12 O -0.52 -11.75 15.20 -18.75 -0.29 -12.03 16 13 O -0.35 -8.38 9.79 -39.25 -0.38 -8.76 16 14 C 0.21 5.74 2.43 -27.88 -0.07 5.67 16 15 H 0.05 1.54 7.14 -51.93 -0.37 1.17 16 16 C -0.15 -3.71 9.32 37.16 0.35 -3.36 16 17 C -0.52 -14.85 8.83 -34.44 -0.30 -15.16 16 18 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 19 C 0.06 1.78 5.29 -17.82 -0.09 1.69 16 20 N -0.89 -25.59 11.98 55.43 0.66 -24.93 16 21 Si 0.91 21.38 29.54 -169.99 -5.02 16.35 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.14 1.96 5.64 -3.73 -0.02 1.94 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.72 6.93 -51.92 -0.36 0.36 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 34 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 2.24 6.84 -51.93 -0.36 1.88 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.11 1.86 7.01 -51.93 -0.36 1.50 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -33.29 334.70 -6.16 -39.45 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.06 Total: -0.59 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 1.08 Total: 7.89 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.13 Total: -32.78 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.34 Total: -35.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.29 -6.16 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.820 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds