Wall clock time and date at job start Tue Mar 31 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34634 * 116.99896 * 2 1 4 4 O 1.21512 * 120.00215 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99691 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63434 * 0.02562 * 5 3 2 7 7 C 1.53194 * 108.78054 * 126.36452 * 6 5 3 8 8 C 1.53041 * 109.30804 * 54.63579 * 7 6 5 9 9 C 1.53040 * 109.54104 * 298.63430 * 8 7 6 10 10 H 1.08996 * 109.52434 * 301.40056 * 9 8 7 11 11 C 1.50701 * 109.49918 * 181.31879 * 9 8 7 12 12 O 1.20829 * 119.99658 * 0.16153 * 11 9 8 13 13 O 1.34228 * 120.00046 * 180.16185 * 11 9 8 14 14 C 1.45199 * 116.99847 * 179.97438 * 13 11 9 15 15 H 1.08995 * 109.47228 * 30.00663 * 14 13 11 16 16 C 1.53000 * 109.47472 * 269.99816 * 14 13 11 17 17 C 1.50702 * 109.46562 * 150.00038 * 14 13 11 18 18 H 1.07996 * 120.00374 * 5.35488 * 17 14 13 19 19 C 1.37876 * 119.99749 * 185.34882 * 17 14 13 20 20 N 1.31518 * 120.00343 * 5.14958 * 19 17 14 21 21 Si 1.86807 * 120.00265 * 185.14783 * 19 17 14 22 22 H 1.48494 * 109.47145 * 84.99953 * 21 19 17 23 23 H 1.48497 * 109.47300 * 205.00262 * 21 19 17 24 24 H 1.48503 * 109.46685 * 325.00509 * 21 19 17 25 25 C 1.46932 * 120.62984 * 179.97438 * 5 3 2 26 26 H 1.08997 * 109.47017 * 59.99851 * 1 2 3 27 27 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46857 * 300.00300 * 1 2 3 29 29 H 1.08997 * 109.58375 * 246.15982 * 6 5 3 30 30 H 1.09011 * 109.58337 * 6.43684 * 6 5 3 31 31 H 1.08997 * 109.49715 * 174.58344 * 7 6 5 32 32 H 1.08995 * 109.49505 * 294.65615 * 7 6 5 33 33 H 1.09003 * 109.46011 * 178.61585 * 8 7 6 34 34 H 1.09003 * 109.46051 * 58.65930 * 8 7 6 35 35 H 1.08998 * 109.46491 * 54.97799 * 16 14 13 36 36 H 1.09004 * 109.46982 * 174.97196 * 16 14 13 37 37 H 1.08998 * 109.47372 * 294.98005 * 16 14 13 38 38 H 0.96999 * 120.00186 * 179.97438 * 20 19 17 39 39 H 1.08994 * 109.58287 * 113.84739 * 25 5 3 40 40 H 1.09000 * 109.70415 * 353.49008 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2229 0.0468 0.0005 7 6 5.2126 0.1127 -1.1670 8 6 6.0235 1.4070 -1.0705 9 6 5.0818 2.6095 -1.1671 10 1 4.5355 2.5697 -2.1094 11 6 5.8845 3.8834 -1.1045 12 8 7.0870 3.8350 -0.9969 13 8 5.2636 5.0718 -1.1682 14 6 6.0999 6.2568 -1.1014 15 1 7.0781 6.0357 -1.5283 16 6 6.2650 6.6830 0.3587 17 6 5.4526 7.3728 -1.8803 18 1 4.4682 7.2361 -2.3030 19 6 6.1171 8.5685 -2.0532 20 7 7.3542 8.7009 -1.6269 21 14 5.2603 10.0004 -2.8930 22 1 4.4600 10.7531 -1.8940 23 1 6.2762 10.9015 -3.4940 24 1 4.3637 9.4846 -3.9585 25 6 4.0906 2.5718 0.0000 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.7705 -0.0277 0.9400 30 1 3.5756 -0.8227 -0.1151 31 1 5.8863 -0.7429 -1.1216 32 1 4.6651 0.0953 -2.1093 33 1 6.7455 1.4449 -1.8863 34 1 6.5513 1.4347 -0.1172 35 1 6.6503 5.8455 0.9402 36 1 6.9638 7.5176 0.4168 37 1 5.2987 6.9895 0.7593 38 1 7.8218 9.5420 -1.7488 39 1 4.6275 2.7035 0.9393 40 1 3.3579 3.3702 -0.1172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:22 Heat of formation + Delta-G solvation = -196.230214 kcal Electronic energy + Delta-G solvation = -23255.611998 eV Core-core repulsion = 19648.572372 eV Total energy + Delta-G solvation = -3607.039625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96518 -41.30012 -39.17073 -37.64787 -37.25958 -35.31358 -34.18580 -32.67235 -31.58727 -28.72676 -27.44737 -26.35548 -25.83605 -23.68105 -22.59573 -21.52808 -20.72648 -19.36214 -18.71387 -18.41157 -18.16951 -17.61832 -17.19521 -16.99063 -16.31680 -15.73808 -15.55211 -15.14755 -15.08588 -14.79924 -14.56085 -14.12298 -14.05472 -13.87985 -13.64488 -13.28215 -12.96389 -12.93942 -12.80108 -12.62090 -12.48571 -12.19669 -12.10407 -12.04799 -11.80431 -11.78759 -11.57310 -11.55388 -11.30364 -11.01402 -10.62569 -9.92876 -8.32166 -6.46804 0.94237 1.31042 1.40332 1.42846 1.52947 1.65668 1.97889 2.39707 2.89114 3.00095 3.52147 3.64269 3.72052 3.97236 4.08987 4.17132 4.37821 4.39409 4.44117 4.50624 4.53470 4.61088 4.72437 4.72781 4.74517 4.79874 4.86328 4.99296 5.12234 5.12504 5.23654 5.32549 5.35210 5.46878 5.55851 5.84538 6.06859 6.19126 6.58098 6.92364 7.13268 7.24610 8.77511 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.004007 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.662008 B = 6985.395523 C = 7864.367040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.364 6.364 3 C 0.646 3.354 4 O -0.608 6.608 5 N -0.588 5.588 6 C 0.105 3.895 7 C -0.122 4.122 8 C -0.102 4.102 9 C -0.085 4.085 10 H 0.114 0.886 11 C 0.455 3.545 12 O -0.541 6.541 13 O -0.364 6.364 14 C 0.215 3.785 15 H 0.014 0.986 16 C -0.135 4.135 17 C -0.552 4.552 18 H 0.064 0.936 19 C 0.019 3.981 20 N -0.917 5.917 21 Si 0.979 3.021 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.267 1.267 25 C 0.145 3.855 26 H 0.057 0.943 27 H 0.141 0.859 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.271 0.729 39 H 0.086 0.914 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -21.599 3.363 23.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.277 6.277 3 C 0.401 3.599 4 O -0.500 6.500 5 N -0.328 5.328 6 C -0.015 4.015 7 C -0.160 4.160 8 C -0.140 4.140 9 C -0.105 4.105 10 H 0.132 0.868 11 C 0.298 3.702 12 O -0.432 6.432 13 O -0.280 6.280 14 C 0.162 3.838 15 H 0.032 0.968 16 C -0.193 4.193 17 C -0.589 4.589 18 H 0.083 0.917 19 C -0.181 4.181 20 N -0.555 5.555 21 Si 0.802 3.198 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.191 1.191 25 C 0.023 3.977 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.856 -21.188 3.421 23.217 hybrid contribution -0.004 1.380 -0.412 1.440 sum -8.860 -19.808 3.008 21.906 Atomic orbital electron populations 1.23519 0.72860 1.05744 1.02410 1.86224 1.25593 1.29173 1.86722 1.18200 0.83397 0.82385 0.75959 1.91012 1.65144 1.36428 1.57380 1.46916 1.01847 1.08770 1.75312 1.22122 0.93951 0.85273 1.00196 1.21933 0.98046 0.97250 0.98778 1.21480 0.96716 0.91739 1.04046 1.21473 0.97143 0.89419 1.02461 0.86775 1.24101 0.87427 0.86828 0.71830 1.90586 1.17350 1.88448 1.46815 1.86505 1.43924 1.15880 1.81686 1.20359 0.89683 0.78886 0.94844 0.96833 1.21902 1.01050 1.00314 0.96017 1.21275 1.03924 0.98010 1.35689 0.91741 1.25809 0.95255 1.01177 0.95862 1.70067 1.11327 1.27101 1.46962 0.85250 0.78146 0.77684 0.78680 1.19149 1.20112 1.19117 1.21291 0.94461 0.84655 0.97331 0.92423 0.84075 0.92282 0.89164 0.86919 0.86602 0.90963 0.90981 0.90629 0.94949 0.91562 0.93249 0.91962 0.89551 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 10.56 113.37 1.20 1.88 16 2 O -0.36 -7.24 9.20 -55.43 -0.51 -7.75 16 3 C 0.65 17.22 8.43 129.79 1.09 18.31 16 4 O -0.61 -21.25 15.55 19.80 0.31 -20.95 16 5 N -0.59 -13.59 2.97 -949.31 -2.82 -16.42 16 6 C 0.11 1.52 6.45 86.36 0.56 2.07 16 7 C -0.12 -1.69 6.08 30.67 0.19 -1.51 16 8 C -0.10 -2.26 4.46 30.62 0.14 -2.13 16 9 C -0.08 -2.48 2.78 -11.47 -0.03 -2.51 16 10 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 11 C 0.45 18.92 7.23 71.24 0.52 19.43 16 12 O -0.54 -25.32 15.20 21.96 0.33 -24.98 16 13 O -0.36 -17.85 9.79 -51.40 -0.50 -18.36 16 14 C 0.22 12.02 2.43 29.85 0.07 12.09 16 15 H 0.01 0.86 7.14 -2.39 -0.02 0.84 16 16 C -0.13 -6.94 9.32 71.98 0.67 -6.27 16 17 C -0.55 -32.10 8.83 25.60 0.23 -31.87 16 18 H 0.06 3.72 7.82 -2.91 -0.02 3.69 16 19 C 0.02 1.07 5.29 84.65 0.45 1.52 16 20 N -0.92 -53.65 11.98 21.45 0.26 -53.40 16 21 Si 0.98 43.82 29.54 68.60 2.03 45.85 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.15 4.06 5.64 86.35 0.49 4.55 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.11 1.26 6.93 -2.38 -0.02 1.25 16 31 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.72 8.07 -2.39 -0.02 1.70 16 34 H 0.08 1.70 8.13 -2.39 -0.02 1.68 16 35 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 3.61 6.84 -2.38 -0.02 3.60 16 37 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.09 2.92 7.01 -2.39 -0.02 2.91 16 Total: -1.00 -74.33 334.70 5.68 -68.66 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.03 Total: 11.76 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 5.56 Total: 15.57 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -2.57 Total: -69.81 kcal Atomic # 8 Polarization: -71.66 SS G_CDS: -0.37 Total: -72.03 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -74.33 5.68 -68.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.573 kcal (2) G-P(sol) polarization free energy of solvation -74.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds