Wall clock time and date at job start Tue Mar 31 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47096 * 28.41837 * 3 2 1 5 5 N 1.46893 * 109.46811 * 181.78860 * 4 3 2 6 6 C 1.46900 * 111.00391 * 75.96131 * 5 4 3 7 7 C 1.50691 * 109.47329 * 195.85707 * 6 5 4 8 8 H 1.07997 * 120.00589 * 355.42004 * 7 6 5 9 9 C 1.37881 * 120.00087 * 175.41904 * 7 6 5 10 10 N 1.31521 * 119.99733 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47033 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47199 * 119.99810 * 11 9 7 14 14 H 1.48500 * 109.46783 * 239.99654 * 11 9 7 15 15 C 1.46908 * 111.00148 * 199.91347 * 5 4 3 16 16 C 1.50702 * 109.47059 * 66.04402 * 15 5 4 17 17 C 1.35006 * 125.68460 * 95.00176 * 16 15 5 18 18 N 1.36838 * 107.09411 * 179.97438 * 17 16 15 19 19 C 1.36458 * 132.73206 * 180.02562 * 18 17 16 20 20 C 1.35576 * 119.07453 * 179.97438 * 19 18 17 21 21 C 1.40202 * 119.32612 * 359.97438 * 20 19 18 22 22 N 1.31228 * 120.37991 * 359.97438 * 21 20 19 23 23 C 1.34083 * 120.92173 * 0.02562 * 22 21 20 24 24 N 1.32518 * 131.94821 * 180.31581 * 23 22 21 25 25 H 1.09009 * 109.46810 * 268.42037 * 3 2 1 26 26 H 1.08999 * 109.46984 * 148.42407 * 3 2 1 27 27 H 1.09005 * 109.46904 * 61.79236 * 4 3 2 28 28 H 1.08997 * 109.47146 * 301.79120 * 4 3 2 29 29 H 1.09006 * 109.46583 * 315.85796 * 6 5 4 30 30 H 1.08998 * 109.46937 * 75.85190 * 6 5 4 31 31 H 0.96999 * 119.99820 * 179.97438 * 10 9 7 32 32 H 1.08993 * 109.47129 * 186.04664 * 15 5 4 33 33 H 1.09001 * 109.46962 * 306.05077 * 15 5 4 34 34 H 1.07997 * 126.44969 * 359.97438 * 17 16 15 35 35 H 1.07999 * 120.45960 * 359.95512 * 19 18 17 36 36 H 1.07999 * 120.33644 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.81372 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2678 -0.6865 5 7 4.5869 -1.2878 -0.6486 6 6 5.0742 -1.6492 0.6894 7 6 6.5326 -1.2886 0.8072 8 1 7.0651 -0.9051 -0.0506 9 6 7.1872 -1.4484 2.0101 10 7 6.5387 -1.9149 3.0548 11 14 8.9949 -1.0008 2.1563 12 1 9.4887 -0.5019 0.8478 13 1 9.1613 0.0573 3.1849 14 1 9.7719 -2.2027 2.5525 15 6 5.1276 -2.1962 -1.6687 16 6 4.8117 -1.6567 -3.0399 17 6 5.6309 -0.8928 -3.7936 18 7 4.9677 -0.6207 -4.9592 19 6 5.3048 0.0951 -6.0710 20 6 4.4155 0.1869 -7.0902 21 6 3.1739 -0.4546 -6.9780 22 7 2.8750 -1.1377 -5.8981 23 6 3.7450 -1.2368 -4.8827 24 7 3.6771 -1.8611 -3.7157 25 1 2.9713 0.0292 1.0274 26 1 2.9710 0.8763 -0.5381 27 1 2.7817 -1.2806 -1.7231 28 1 2.7297 -2.1436 -0.1672 29 1 4.5035 -1.1059 1.4427 30 1 4.9512 -2.7211 0.8435 31 1 6.9993 -2.0276 3.9010 32 1 6.2081 -2.2748 -1.5492 33 1 4.6766 -3.1818 -1.5534 34 1 6.6229 -0.5594 -3.5269 35 1 6.2665 0.5819 -6.1379 36 1 4.6609 0.7485 -7.9794 37 1 2.4597 -0.3870 -7.7853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120278831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:03 Heat of formation + Delta-G solvation = 144.019804 kcal Electronic energy + Delta-G solvation = -21410.149218 eV Core-core repulsion = 18189.758363 eV Total energy + Delta-G solvation = -3220.390855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.96396 -38.56153 -37.18169 -35.94128 -34.56028 -32.71049 -31.67449 -30.67839 -29.36642 -27.40264 -25.81833 -23.85342 -23.43810 -22.94313 -21.06185 -19.79012 -18.18524 -17.63602 -17.11643 -16.55350 -16.28335 -16.17453 -15.09357 -14.57170 -14.53602 -14.27499 -14.04299 -13.82740 -13.61443 -13.20124 -12.68511 -12.44606 -12.40672 -12.11196 -11.97875 -11.73472 -11.34599 -11.29191 -10.96523 -10.86471 -10.67436 -10.45854 -10.33335 -9.93678 -9.68184 -9.31296 -9.00029 -8.48606 -8.07839 -7.40015 -6.07776 -4.09510 0.43420 1.00121 2.37407 2.77456 3.09197 3.13752 3.27343 3.35721 3.37892 3.52808 3.58248 4.15692 4.29501 4.32720 4.41951 4.62864 4.91538 5.11685 5.26018 5.29129 5.32841 5.47079 5.54556 5.58191 5.68247 6.01900 6.05385 6.09698 6.28346 6.33567 6.47153 6.63976 6.67612 7.11884 7.26736 7.53224 7.72890 7.89397 7.97361 8.02680 8.10299 8.43454 8.97568 9.55048 11.02792 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.004888 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.503456 B = 5726.729395 C = 7352.214844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.221 3.779 3 C -0.024 4.024 4 C 0.053 3.947 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.139 3.861 16 C 0.098 3.902 17 C -0.074 4.074 18 N -0.401 5.401 19 C 0.115 3.885 20 C -0.217 4.217 21 C 0.160 3.840 22 N -0.436 5.436 23 C 0.368 3.632 24 N -0.465 5.465 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.040 0.960 30 H -0.006 1.006 31 H 0.261 0.739 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.190 0.810 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 5.092 -19.027 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.097 4.097 3 C -0.065 4.065 4 C -0.077 4.077 5 N -0.253 5.253 6 C 0.064 3.936 7 C -0.546 4.546 8 H 0.083 0.917 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.212 1.212 15 C 0.010 3.990 16 C -0.035 4.035 17 C -0.205 4.205 18 N -0.079 5.079 19 C -0.018 4.018 20 C -0.240 4.240 21 C -0.028 4.028 22 N -0.147 5.147 23 C 0.021 3.979 24 N -0.188 5.188 25 H 0.133 0.867 26 H 0.127 0.873 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.012 0.988 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.207 0.793 35 H 0.189 0.811 36 H 0.178 0.822 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.227 4.525 -18.284 18.967 hybrid contribution 2.645 0.434 -0.044 2.680 sum 0.418 4.960 -18.327 18.991 Atomic orbital electron populations 1.81132 1.13254 1.09421 1.09974 1.29448 0.95500 0.92467 0.92243 1.19334 0.80104 1.01780 1.05236 1.22023 0.90303 0.94415 1.01006 1.62036 1.04830 1.50992 1.07427 1.19874 0.96157 0.94766 0.82803 1.21155 0.94419 1.42683 0.96338 0.91706 1.24973 0.98312 0.95390 0.95781 1.69957 1.36379 1.45851 1.01357 0.86485 0.85063 0.78005 0.78077 1.19716 1.21104 1.21206 1.20415 1.01837 0.93351 0.83394 1.21227 0.88760 0.96598 0.96903 1.22571 1.02159 1.09643 0.86117 1.43989 1.16562 1.34024 1.13297 1.22163 1.01026 0.93570 0.84998 1.21718 0.95627 1.06048 1.00621 1.23210 0.95080 0.90331 0.94179 1.67851 1.29452 1.18072 0.99362 1.21953 0.82285 0.98160 0.95541 1.70643 1.23751 1.23057 1.01375 0.86723 0.87332 0.89777 0.94601 0.94178 0.98774 0.92908 0.87617 0.93651 0.79259 0.81053 0.82194 0.80526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.64 18.54 42.15 0.78 -7.86 16 2 C 0.22 3.71 15.43 -20.76 -0.32 3.39 16 3 C -0.02 -0.37 5.84 -29.52 -0.17 -0.55 16 4 C 0.05 0.93 4.80 -3.83 -0.02 0.91 16 5 N -0.53 -10.11 4.37 -237.52 -1.04 -11.15 16 6 C 0.19 4.35 4.55 -4.98 -0.02 4.33 16 7 C -0.51 -12.72 8.53 -34.44 -0.29 -13.02 16 8 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 9 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -24.97 13.29 55.43 0.74 -24.23 16 11 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.14 2.46 5.34 -4.97 -0.03 2.44 16 16 C 0.10 1.62 5.86 -82.95 -0.49 1.13 16 17 C -0.07 -1.02 11.67 -16.47 -0.19 -1.21 16 18 N -0.40 -5.15 2.95 -64.40 -0.19 -5.34 16 19 C 0.12 0.95 11.07 -16.44 -0.18 0.76 16 20 C -0.22 -1.40 10.06 -39.80 -0.40 -1.80 16 21 C 0.16 1.39 11.27 -17.07 -0.19 1.20 16 22 N -0.44 -6.17 10.48 -13.70 -0.14 -6.31 16 23 C 0.37 5.87 8.92 -322.53 -2.88 2.99 16 24 N -0.46 -8.36 9.87 -10.66 -0.11 -8.47 16 25 H 0.11 1.80 6.72 -51.92 -0.35 1.46 16 26 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 27 H 0.08 1.53 5.77 -51.93 -0.30 1.23 16 28 H 0.04 0.65 8.00 -51.93 -0.42 0.24 16 29 H 0.04 0.98 6.53 -51.93 -0.34 0.64 16 30 H -0.01 -0.14 8.05 -51.93 -0.42 -0.56 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.11 1.87 7.01 -51.93 -0.36 1.51 16 33 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.19 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.16 0.38 8.06 -52.49 -0.42 -0.05 16 37 H 0.18 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -33.20 325.44 -9.60 -42.80 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.25 Total: -1.42 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -5.28 Total: 1.98 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.04 Total: -63.36 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.20 -9.60 -42.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120278831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.822 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds