Wall clock time and date at job start Tue Mar 31 2020 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47096 * 28.41837 * 3 2 1 5 5 N 1.46893 * 109.46811 * 181.78860 * 4 3 2 6 6 C 1.46900 * 111.00391 * 75.96131 * 5 4 3 7 7 C 1.50691 * 109.47329 * 195.85707 * 6 5 4 8 8 H 1.07997 * 120.00589 * 355.42004 * 7 6 5 9 9 C 1.37881 * 120.00087 * 175.41904 * 7 6 5 10 10 N 1.31521 * 119.99733 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47033 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47199 * 119.99810 * 11 9 7 14 14 H 1.48500 * 109.46783 * 239.99654 * 11 9 7 15 15 C 1.46908 * 111.00148 * 199.91347 * 5 4 3 16 16 C 1.50702 * 109.47059 * 66.04402 * 15 5 4 17 17 C 1.35006 * 125.68460 * 95.00176 * 16 15 5 18 18 N 1.36838 * 107.09411 * 179.97438 * 17 16 15 19 19 C 1.36458 * 132.73206 * 180.02562 * 18 17 16 20 20 C 1.35576 * 119.07453 * 179.97438 * 19 18 17 21 21 C 1.40202 * 119.32612 * 359.97438 * 20 19 18 22 22 N 1.31228 * 120.37991 * 359.97438 * 21 20 19 23 23 C 1.34083 * 120.92173 * 0.02562 * 22 21 20 24 24 N 1.32518 * 131.94821 * 180.31581 * 23 22 21 25 25 H 1.09009 * 109.46810 * 268.42037 * 3 2 1 26 26 H 1.08999 * 109.46984 * 148.42407 * 3 2 1 27 27 H 1.09005 * 109.46904 * 61.79236 * 4 3 2 28 28 H 1.08997 * 109.47146 * 301.79120 * 4 3 2 29 29 H 1.09006 * 109.46583 * 315.85796 * 6 5 4 30 30 H 1.08998 * 109.46937 * 75.85190 * 6 5 4 31 31 H 0.96999 * 119.99820 * 179.97438 * 10 9 7 32 32 H 1.08993 * 109.47129 * 186.04664 * 15 5 4 33 33 H 1.09001 * 109.46962 * 306.05077 * 15 5 4 34 34 H 1.07997 * 126.44969 * 359.97438 * 17 16 15 35 35 H 1.07999 * 120.45960 * 359.95512 * 19 18 17 36 36 H 1.07999 * 120.33644 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.81372 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2678 -0.6865 5 7 4.5869 -1.2878 -0.6486 6 6 5.0742 -1.6492 0.6894 7 6 6.5326 -1.2886 0.8072 8 1 7.0651 -0.9051 -0.0506 9 6 7.1872 -1.4484 2.0101 10 7 6.5387 -1.9149 3.0548 11 14 8.9949 -1.0008 2.1563 12 1 9.4887 -0.5019 0.8478 13 1 9.1613 0.0573 3.1849 14 1 9.7719 -2.2027 2.5525 15 6 5.1276 -2.1962 -1.6687 16 6 4.8117 -1.6567 -3.0399 17 6 5.6309 -0.8928 -3.7936 18 7 4.9677 -0.6207 -4.9592 19 6 5.3048 0.0951 -6.0710 20 6 4.4155 0.1869 -7.0902 21 6 3.1739 -0.4546 -6.9780 22 7 2.8750 -1.1377 -5.8981 23 6 3.7450 -1.2368 -4.8827 24 7 3.6771 -1.8611 -3.7157 25 1 2.9713 0.0292 1.0274 26 1 2.9710 0.8763 -0.5381 27 1 2.7817 -1.2806 -1.7231 28 1 2.7297 -2.1436 -0.1672 29 1 4.5035 -1.1059 1.4427 30 1 4.9512 -2.7211 0.8435 31 1 6.9993 -2.0276 3.9010 32 1 6.2081 -2.2748 -1.5492 33 1 4.6766 -3.1818 -1.5534 34 1 6.6229 -0.5594 -3.5269 35 1 6.2665 0.5819 -6.1379 36 1 4.6609 0.7485 -7.9794 37 1 2.4597 -0.3870 -7.7853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120278831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:02 Heat of formation + Delta-G solvation = 124.367066 kcal Electronic energy + Delta-G solvation = -21411.001425 eV Core-core repulsion = 18189.758363 eV Total energy + Delta-G solvation = -3221.243062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.89884 -39.59550 -38.53206 -37.41266 -35.46538 -34.63052 -32.87315 -31.79761 -30.53611 -28.96219 -27.15903 -24.86834 -24.76117 -24.15483 -22.40922 -21.13149 -19.08472 -18.56809 -18.53519 -18.30009 -17.30674 -16.94390 -16.70162 -16.08199 -15.79273 -15.48297 -15.21400 -15.04349 -14.91486 -14.28652 -14.00258 -13.78480 -13.74683 -13.47684 -13.25556 -13.12501 -12.88028 -12.68966 -12.55013 -12.45019 -12.32206 -12.00491 -11.63386 -11.31400 -11.15406 -10.68549 -10.48522 -9.93177 -9.10138 -9.02289 -8.07444 -6.15302 -0.26169 0.18929 1.51235 1.53164 1.53896 1.63428 1.65221 1.73888 1.79927 2.50948 2.64828 2.69960 2.93423 3.27002 3.44478 3.66149 3.70608 3.89767 4.12421 4.21502 4.24126 4.35061 4.41159 4.63484 4.74281 4.77743 4.84658 4.89697 4.96127 5.06791 5.29735 5.31663 5.36076 5.56840 5.78516 5.82678 6.15024 6.34748 6.51184 6.60487 6.66121 7.00203 7.06086 7.53768 9.03661 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.004888 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.503456 B = 5726.729395 C = 7352.214844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.241 3.759 3 C -0.012 4.012 4 C 0.058 3.942 5 N -0.520 5.520 6 C 0.201 3.799 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.963 3.037 12 H -0.255 1.255 13 H -0.286 1.286 14 H -0.288 1.288 15 C 0.147 3.853 16 C 0.066 3.934 17 C -0.064 4.064 18 N -0.404 5.404 19 C 0.104 3.896 20 C -0.198 4.198 21 C 0.174 3.826 22 N -0.493 5.493 23 C 0.353 3.647 24 N -0.518 5.518 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.081 0.919 28 H 0.021 0.979 29 H 0.026 0.974 30 H -0.037 1.037 31 H 0.261 0.739 32 H 0.103 0.897 33 H 0.027 0.973 34 H 0.216 0.784 35 H 0.215 0.785 36 H 0.214 0.786 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 7.518 -22.338 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.076 4.076 3 C -0.052 4.052 4 C -0.072 4.072 5 N -0.244 5.244 6 C 0.076 3.924 7 C -0.548 4.548 8 H 0.092 0.908 9 C -0.194 4.194 10 N -0.578 5.578 11 Si 0.788 3.212 12 H -0.179 1.179 13 H -0.212 1.212 14 H -0.215 1.215 15 C 0.018 3.982 16 C -0.065 4.065 17 C -0.196 4.196 18 N -0.081 5.081 19 C -0.026 4.026 20 C -0.220 4.220 21 C -0.011 4.011 22 N -0.207 5.207 23 C 0.004 3.996 24 N -0.243 5.243 25 H 0.134 0.866 26 H 0.148 0.852 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.044 0.956 30 H -0.019 1.019 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.045 0.955 34 H 0.232 0.768 35 H 0.232 0.768 36 H 0.231 0.769 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.459 6.973 -21.641 22.742 hybrid contribution 2.027 -0.274 0.687 2.157 sum 1.568 6.700 -20.955 22.055 Atomic orbital electron populations 1.81144 1.14193 1.10535 1.11136 1.29524 0.95444 0.91422 0.91180 1.19282 0.79188 1.01466 1.05252 1.21957 0.89405 0.94933 1.00868 1.61992 1.05615 1.51012 1.05787 1.19575 0.95710 0.92503 0.84649 1.21490 0.95197 1.41627 0.96458 0.90797 1.25813 1.02642 0.95445 0.95531 1.70094 1.38227 1.47508 1.01928 0.85428 0.79795 0.77368 0.78564 1.17891 1.21210 1.21461 1.20237 1.01227 0.92368 0.84376 1.20852 0.89927 0.99124 0.96626 1.22763 1.02395 1.08380 0.86044 1.44054 1.15537 1.34338 1.14187 1.23146 1.03237 0.92630 0.83626 1.22357 0.93750 1.04379 1.01522 1.24175 0.96694 0.87231 0.93030 1.67925 1.30427 1.21505 1.00853 1.22020 0.83681 0.98402 0.95509 1.70441 1.25105 1.25444 1.03291 0.86649 0.85166 0.90052 0.96028 0.95618 1.01905 0.93051 0.87889 0.95510 0.76755 0.76840 0.76898 0.76577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.66 18.54 20.01 0.37 -18.29 16 2 C 0.24 8.16 15.43 89.44 1.38 9.54 16 3 C -0.01 -0.36 5.84 28.79 0.17 -0.19 16 4 C 0.06 2.14 4.80 86.30 0.41 2.56 16 5 N -0.52 -20.57 4.37 -905.37 -3.96 -24.53 16 6 C 0.20 9.67 4.55 85.55 0.39 10.06 16 7 C -0.51 -25.75 8.53 25.60 0.22 -25.53 16 8 H 0.07 3.54 7.42 -2.91 -0.02 3.52 16 9 C 0.00 0.18 5.46 84.65 0.46 0.64 16 10 N -0.94 -53.37 13.29 21.45 0.28 -53.09 16 11 Si 0.96 41.07 29.54 68.60 2.03 43.09 16 12 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 13 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 15 C 0.15 5.46 5.34 85.56 0.46 5.92 16 16 C 0.07 2.24 5.86 41.54 0.24 2.49 16 17 C -0.06 -1.70 11.67 83.17 0.97 -0.73 16 18 N -0.40 -9.59 2.95 -357.67 -1.05 -10.65 16 19 C 0.10 1.25 11.07 83.36 0.92 2.17 16 20 C -0.20 -1.48 10.06 22.13 0.22 -1.26 16 21 C 0.17 2.40 11.27 85.26 0.96 3.36 16 22 N -0.49 -13.42 10.48 -197.25 -2.07 -15.49 16 23 C 0.35 11.16 8.92 261.39 2.33 13.49 16 24 N -0.52 -19.36 9.87 -187.64 -1.85 -21.22 16 25 H 0.12 3.68 6.72 -2.38 -0.02 3.66 16 26 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 27 H 0.08 3.11 5.77 -2.38 -0.01 3.10 16 28 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16 29 H 0.03 1.30 6.53 -2.38 -0.02 1.29 16 30 H -0.04 -1.97 8.05 -2.39 -0.02 -1.99 16 31 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.10 3.78 7.01 -2.39 -0.02 3.76 16 33 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 34 H 0.22 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.21 -0.65 8.06 -2.91 -0.02 -0.68 16 37 H 0.22 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -76.90 325.44 3.99 -72.91 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.10 Total: 4.75 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 9.14 Total: 22.50 kcal Atomic # 7 Polarization: -134.98 SS G_CDS: -8.28 Total: -143.26 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -76.90 3.99 -72.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120278831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.281 kcal (2) G-P(sol) polarization free energy of solvation -76.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds