Wall clock time and date at job start Tue Mar 31 2020 05:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 113.99937 * 2 1 4 4 C 1.53005 * 109.46997 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47216 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47258 * 179.97438 * 5 4 3 7 7 C 1.36760 * 127.14554 * 265.17651 * 6 5 4 8 8 N 1.30296 * 107.31529 * 180.26309 * 7 6 5 9 9 N 1.28517 * 110.07965 * 359.73985 * 8 7 6 10 10 C 1.31281 * 109.86239 * 359.97438 * 9 8 7 11 11 S 1.76193 * 126.48767 * 180.02562 * 10 9 8 12 12 C 1.81002 * 100.00049 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47116 * 59.99479 * 19 17 15 21 21 H 1.48490 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00079 * 19 17 15 23 23 H 1.08995 * 109.47361 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47601 * 300.00135 * 1 2 3 25 25 H 1.09007 * 109.47416 * 59.99909 * 1 2 3 26 26 H 1.08999 * 109.47061 * 60.00093 * 3 2 1 27 27 H 1.09001 * 109.47114 * 299.99701 * 3 2 1 28 28 H 1.09001 * 109.47487 * 59.99589 * 4 3 2 29 29 H 1.09001 * 109.46826 * 299.99733 * 4 3 2 30 30 H 1.09001 * 109.47228 * 59.99430 * 5 4 3 31 31 H 1.09004 * 109.47221 * 300.00358 * 5 4 3 32 32 H 1.07999 * 126.34073 * 359.97438 * 7 6 5 33 33 H 1.09002 * 109.47115 * 60.00094 * 12 11 10 34 34 H 1.09001 * 109.46925 * 300.00251 * 12 11 10 35 35 H 1.09001 * 109.47194 * 299.99731 * 13 12 11 36 36 H 1.08992 * 109.47399 * 59.99903 * 13 12 11 37 37 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 38 38 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 39 39 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5823 -0.0013 6 7 5.6181 2.4667 -0.0013 7 6 6.4486 2.4933 1.0849 8 7 7.6680 2.3650 0.6440 9 7 7.6649 2.2543 -0.6364 10 6 6.4324 2.3061 -1.0855 11 16 5.9255 2.1969 -2.7694 12 6 7.5371 2.0076 -3.5712 13 6 7.3433 1.8908 -5.0844 14 6 8.7056 1.7301 -5.7621 15 6 8.5148 1.6144 -7.2524 16 1 7.5212 1.6513 -7.6741 17 6 9.6087 1.4614 -8.0777 18 7 10.8187 1.4170 -7.5643 19 14 9.3722 1.3187 -9.9252 20 1 8.7065 2.5443 -10.4352 21 1 10.6943 1.1627 -10.5829 22 1 8.5274 0.1350 -10.2261 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8567 0.6439 -0.8908 29 1 3.8574 0.6436 0.8892 30 1 3.8364 3.1236 0.8886 31 1 3.8357 3.1231 -0.8913 32 1 6.1496 2.6052 2.1166 33 1 8.0259 1.1082 -3.1966 34 1 8.1569 2.8767 -3.3506 35 1 6.7234 1.0219 -5.3053 36 1 6.8548 2.7903 -5.4587 37 1 9.3260 2.5988 -5.5413 38 1 9.1939 0.8304 -5.3877 39 1 11.5882 1.3098 -8.1450 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121545466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:51 Heat of formation + Delta-G solvation = 10.754088 kcal Electronic energy + Delta-G solvation = -19240.580652 eV Core-core repulsion = 16117.562161 eV Total energy + Delta-G solvation = -3123.018490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.89544 -38.50919 -36.09282 -34.49786 -32.26036 -32.04151 -30.72305 -27.70801 -27.49338 -25.80781 -23.67539 -22.90084 -22.44728 -21.91716 -20.23406 -18.14187 -16.87168 -16.70443 -16.50446 -16.24917 -15.89203 -15.39446 -15.11796 -14.70694 -14.58052 -14.52173 -13.85873 -13.20293 -12.89272 -12.57865 -12.41241 -11.88101 -11.84563 -11.71760 -11.57505 -11.50595 -11.15164 -10.87439 -10.71749 -10.55707 -10.42836 -10.16622 -10.14005 -10.06784 -9.78814 -9.37065 -9.12544 -8.35048 -7.59054 -5.99618 -4.02979 1.16366 1.56546 2.28764 2.44811 2.81459 3.29213 3.34344 3.38926 3.41075 4.07936 4.37167 4.46244 4.49939 4.55137 4.58539 4.77732 4.88016 4.90232 4.95694 5.11863 5.24553 5.31097 5.35902 5.52231 5.52813 5.60994 5.66230 5.88016 6.13880 6.47758 6.56765 6.65483 6.66866 6.96792 7.65101 7.76671 7.98712 8.38751 8.60334 9.03142 9.61020 11.11539 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.003029 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.865839 B = 9240.486097 C =10596.709967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.067 3.933 4 C -0.139 4.139 5 C 0.112 3.888 6 N -0.470 5.470 7 C 0.150 3.850 8 N -0.288 5.288 9 N -0.291 5.291 10 C 0.170 3.830 11 S -0.027 6.027 12 C -0.087 4.087 13 C -0.097 4.097 14 C 0.029 3.971 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.088 0.912 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.991 2.157 18.792 28.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.178 4.178 5 C -0.011 4.011 6 N -0.165 5.165 7 C -0.140 4.140 8 N -0.126 5.126 9 N -0.135 5.135 10 C -0.205 4.205 11 S 0.203 5.797 12 C -0.235 4.235 13 C -0.137 4.137 14 C -0.010 4.010 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.236 0.764 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.268 1.917 18.312 27.383 hybrid contribution -0.490 0.231 -0.218 0.584 sum -20.758 2.148 18.095 27.621 Atomic orbital electron populations 1.22771 0.80561 1.03075 1.00086 1.87896 1.20045 1.27438 1.95440 1.22339 0.92743 0.85297 1.00680 1.21872 0.94094 0.96415 1.05401 1.21766 0.75470 0.98354 1.05534 1.46623 1.08433 1.55511 1.05889 1.26647 0.86747 1.05914 0.94654 1.73962 1.18408 1.16733 1.03498 1.74786 1.15420 1.20273 1.03005 1.27130 0.90205 1.06453 0.96688 1.85492 1.16380 1.91126 0.86723 1.23922 0.92778 1.06814 1.00006 1.21554 1.02534 1.01489 0.88133 1.19084 0.89535 0.97721 0.94640 1.21157 0.92920 1.50394 0.91698 0.92602 1.25023 0.95245 0.95288 0.98844 1.69961 0.97965 1.49944 1.35355 0.86633 0.77235 0.78639 0.85347 1.20222 1.21275 1.20210 0.89399 0.94032 0.93774 0.92963 0.92563 0.89361 0.90128 0.87984 0.88095 0.76430 0.88800 0.88838 0.92201 0.92228 0.96113 0.96099 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.39 10.70 -35.23 -0.38 -3.76 16 3 C 0.07 0.42 5.94 37.16 0.22 0.64 16 4 C -0.14 -1.02 5.91 -26.73 -0.16 -1.18 16 5 C 0.11 0.76 6.02 -4.05 -0.02 0.73 16 6 N -0.47 -5.22 2.81 -118.17 -0.33 -5.56 16 7 C 0.15 1.68 12.80 -88.95 -1.14 0.54 16 8 N -0.29 -4.62 12.17 29.90 0.36 -4.26 16 9 N -0.29 -5.20 11.60 30.68 0.36 -4.85 16 10 C 0.17 2.55 8.07 -88.34 -0.71 1.84 16 11 S -0.03 -0.40 21.93 -107.50 -2.36 -2.75 16 12 C -0.09 -1.54 5.23 37.16 0.19 -1.35 16 13 C -0.10 -1.96 5.16 -26.73 -0.14 -2.09 16 14 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 15 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.04 0.21 8.14 -51.92 -0.42 -0.21 16 26 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.65 8.02 -51.93 -0.42 0.24 16 32 H 0.22 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 34 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -34.43 349.15 -8.86 -43.29 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -6.30 Total: -5.29 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.19 Total: -12.44 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 1.12 Total: -40.90 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.38 Total: -3.76 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.36 Total: -2.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.43 -8.86 -43.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121545466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.041 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds