Wall clock time and date at job start Tue Mar 31 2020 05:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 113.99937 * 2 1 4 4 C 1.53005 * 109.46997 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47216 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47258 * 179.97438 * 5 4 3 7 7 C 1.36760 * 127.14554 * 265.17651 * 6 5 4 8 8 N 1.30296 * 107.31529 * 180.26309 * 7 6 5 9 9 N 1.28517 * 110.07965 * 359.73985 * 8 7 6 10 10 C 1.31281 * 109.86239 * 359.97438 * 9 8 7 11 11 S 1.76193 * 126.48767 * 180.02562 * 10 9 8 12 12 C 1.81002 * 100.00049 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47116 * 59.99479 * 19 17 15 21 21 H 1.48490 * 109.47381 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00079 * 19 17 15 23 23 H 1.08995 * 109.47361 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47601 * 300.00135 * 1 2 3 25 25 H 1.09007 * 109.47416 * 59.99909 * 1 2 3 26 26 H 1.08999 * 109.47061 * 60.00093 * 3 2 1 27 27 H 1.09001 * 109.47114 * 299.99701 * 3 2 1 28 28 H 1.09001 * 109.47487 * 59.99589 * 4 3 2 29 29 H 1.09001 * 109.46826 * 299.99733 * 4 3 2 30 30 H 1.09001 * 109.47228 * 59.99430 * 5 4 3 31 31 H 1.09004 * 109.47221 * 300.00358 * 5 4 3 32 32 H 1.07999 * 126.34073 * 359.97438 * 7 6 5 33 33 H 1.09002 * 109.47115 * 60.00094 * 12 11 10 34 34 H 1.09001 * 109.46925 * 300.00251 * 12 11 10 35 35 H 1.09001 * 109.47194 * 299.99731 * 13 12 11 36 36 H 1.08992 * 109.47399 * 59.99903 * 13 12 11 37 37 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 38 38 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 39 39 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5823 -0.0013 6 7 5.6181 2.4667 -0.0013 7 6 6.4486 2.4933 1.0849 8 7 7.6680 2.3650 0.6440 9 7 7.6649 2.2543 -0.6364 10 6 6.4324 2.3061 -1.0855 11 16 5.9255 2.1969 -2.7694 12 6 7.5371 2.0076 -3.5712 13 6 7.3433 1.8908 -5.0844 14 6 8.7056 1.7301 -5.7621 15 6 8.5148 1.6144 -7.2524 16 1 7.5212 1.6513 -7.6741 17 6 9.6087 1.4614 -8.0777 18 7 10.8187 1.4170 -7.5643 19 14 9.3722 1.3187 -9.9252 20 1 8.7065 2.5443 -10.4352 21 1 10.6943 1.1627 -10.5829 22 1 8.5274 0.1350 -10.2261 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8567 0.6439 -0.8908 29 1 3.8574 0.6436 0.8892 30 1 3.8364 3.1236 0.8886 31 1 3.8357 3.1231 -0.8913 32 1 6.1496 2.6052 2.1166 33 1 8.0259 1.1082 -3.1966 34 1 8.1569 2.8767 -3.3506 35 1 6.7234 1.0219 -5.3053 36 1 6.8548 2.7903 -5.4587 37 1 9.3260 2.5988 -5.5413 38 1 9.1939 0.8304 -5.3877 39 1 11.5882 1.3098 -8.1450 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121545466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:50 Heat of formation + Delta-G solvation = -9.511750 kcal Electronic energy + Delta-G solvation = -19241.459445 eV Core-core repulsion = 16117.562161 eV Total energy + Delta-G solvation = -3123.897283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.91211 -39.01999 -36.86980 -36.37610 -34.08391 -32.95504 -31.81485 -29.44381 -28.21034 -26.38071 -25.47999 -23.90987 -23.42060 -22.75240 -21.90809 -19.06978 -18.47659 -17.54439 -17.34846 -17.18559 -16.80114 -16.56466 -16.25220 -16.14727 -15.73400 -15.38992 -15.04199 -14.47131 -13.89409 -13.71018 -13.69027 -13.32138 -13.12367 -12.85361 -12.72822 -12.49649 -12.43357 -12.18754 -12.06700 -11.95987 -11.71851 -11.47741 -11.36206 -11.28116 -11.12585 -11.08073 -10.61848 -10.54759 -8.75730 -8.18988 -6.31014 0.01158 0.59120 0.99092 1.42024 1.45463 1.53357 1.59808 1.75281 2.42598 2.81599 3.14433 3.51997 3.70610 3.95610 3.96911 4.01118 4.06082 4.08376 4.18828 4.32329 4.46205 4.50860 4.53561 4.56376 4.62364 4.77557 4.80610 4.88854 4.97531 5.03880 5.04908 5.12963 5.49345 5.66924 5.78440 5.83042 6.21322 6.23481 6.85431 7.38422 7.55086 8.92911 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.003029 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.865839 B = 9240.486097 C =10596.709967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.066 3.934 4 C -0.133 4.133 5 C 0.107 3.893 6 N -0.461 5.461 7 C 0.180 3.820 8 N -0.341 5.341 9 N -0.339 5.339 10 C 0.149 3.851 11 S 0.023 5.977 12 C -0.089 4.089 13 C -0.081 4.081 14 C 0.030 3.970 15 C -0.543 4.543 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.265 1.265 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.106 0.894 32 H 0.274 0.726 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.069 0.931 37 H -0.006 1.006 38 H -0.007 1.007 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.081 2.934 19.609 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.343 6.343 3 C -0.011 4.011 4 C -0.172 4.172 5 C -0.014 4.014 6 N -0.155 5.155 7 C -0.110 4.110 8 N -0.179 5.179 9 N -0.183 5.183 10 C -0.227 4.227 11 S 0.253 5.747 12 C -0.238 4.238 13 C -0.121 4.121 14 C -0.009 4.009 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.190 1.190 23 H 0.108 0.892 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.166 0.834 31 H 0.125 0.875 32 H 0.289 0.711 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.393 2.698 19.136 30.344 hybrid contribution 0.384 -0.010 -0.302 0.488 sum -23.010 2.688 18.835 29.857 Atomic orbital electron populations 1.22914 0.79206 1.03685 1.01146 1.87846 1.21694 1.29027 1.95703 1.22432 0.91557 0.84751 1.02351 1.21787 0.95249 0.96364 1.03782 1.22170 0.72648 0.98467 1.08118 1.46881 1.09929 1.54156 1.04552 1.27649 0.85350 1.01674 0.96351 1.73853 1.21378 1.19668 1.03003 1.74678 1.17417 1.21849 1.04370 1.27101 0.90579 1.07434 0.97609 1.85048 1.11987 1.91359 0.86339 1.23560 0.95531 1.05641 0.99104 1.21235 0.99261 1.02214 0.89352 1.18965 0.92149 0.95161 0.94625 1.21641 0.93499 1.50015 0.92972 0.91551 1.26032 0.94832 0.94759 1.04403 1.70114 0.98969 1.51061 1.37351 0.85457 0.77364 0.79295 0.78680 1.18929 1.21064 1.19005 0.89188 0.92475 0.93151 0.90272 0.91805 0.92362 0.90431 0.83448 0.87533 0.71107 0.90262 0.90064 0.91404 0.91211 0.98759 0.98866 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.62 10.70 -148.98 -1.59 -8.21 16 3 C 0.07 0.63 5.94 71.98 0.43 1.06 16 4 C -0.13 -1.64 5.91 30.59 0.18 -1.46 16 5 C 0.11 1.06 6.02 86.38 0.52 1.58 16 6 N -0.46 -9.16 2.81 -527.79 -1.48 -10.65 16 7 C 0.18 3.54 12.80 179.77 2.30 5.84 16 8 N -0.34 -10.83 12.17 -59.32 -0.72 -11.55 16 9 N -0.34 -12.36 11.60 -56.86 -0.66 -13.02 16 10 C 0.15 4.40 8.07 179.55 1.45 5.85 16 11 S 0.02 0.67 21.93 -56.49 -1.24 -0.57 16 12 C -0.09 -3.29 5.23 71.98 0.38 -2.91 16 13 C -0.08 -3.33 5.16 30.59 0.16 -3.17 16 14 C 0.03 1.61 4.97 29.85 0.15 1.76 16 15 C -0.54 -31.02 9.11 25.60 0.23 -30.78 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 17 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 18 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 19 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 25 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 26 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.11 1.01 8.02 -2.38 -0.02 0.99 16 32 H 0.27 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 37 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -78.66 349.15 5.13 -73.53 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.01 Total: 2.20 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 7.50 Total: -20.44 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -2.58 Total: -93.01 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -1.59 Total: -8.21 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -1.24 Total: -0.57 kcal Total: -78.66 5.13 -73.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121545466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.022 kcal (2) G-P(sol) polarization free energy of solvation -78.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds