Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00130 * 2 1 4 4 H 1.48500 * 109.46797 * 240.00283 * 3 2 1 5 5 H 1.48501 * 109.46760 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47250 * 119.99954 * 3 2 1 7 7 C 1.37881 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99540 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99379 * 269.99503 * 10 9 7 12 12 C 1.50700 * 109.47107 * 269.99982 * 11 10 9 13 13 C 1.38671 * 120.41686 * 269.72256 * 12 11 10 14 14 C 1.38629 * 118.41595 * 179.78549 * 13 12 11 15 15 C 1.38230 * 119.16166 * 0.51222 * 14 13 12 16 16 N 1.31853 * 120.76585 * 359.72908 * 15 14 13 17 17 C 1.31891 * 121.72022 * 359.97438 * 16 15 14 18 18 C 1.38520 * 120.00374 * 89.99906 * 10 9 7 19 19 C 1.39683 * 120.48706 * 184.99827 * 18 10 9 20 20 C 1.38085 * 118.49205 * 180.02562 * 19 18 10 21 21 N 1.32524 * 119.29190 * 359.97438 * 20 19 18 22 22 C 1.32468 * 120.93030 * 0.02562 * 21 20 19 23 23 N 1.38397 * 119.17419 * 179.97438 * 22 21 20 24 24 N 1.32464 * 121.64542 * 0.02562 * 22 21 20 25 25 H 0.96998 * 120.00375 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47222 * 59.99561 * 9 7 2 27 27 H 1.09004 * 109.46816 * 299.99979 * 9 7 2 28 28 H 1.08997 * 109.46930 * 30.00781 * 11 10 9 29 29 H 1.08998 * 109.46480 * 150.00239 * 11 10 9 30 30 H 1.07992 * 120.79548 * 0.02786 * 13 12 11 31 31 H 1.08005 * 120.41870 * 180.22382 * 14 13 12 32 32 H 1.07997 * 119.61517 * 179.74922 * 15 14 13 33 33 H 1.08000 * 119.61073 * 180.02562 * 17 16 15 34 34 H 1.08004 * 120.75477 * 359.97438 * 19 18 10 35 35 H 1.07998 * 120.35470 * 180.02562 * 20 19 18 36 36 H 0.96996 * 119.99929 * 0.02562 * 23 22 21 37 37 H 0.97005 * 119.99778 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6799 -4.1700 -1.2665 12 6 1.7635 -5.2844 -1.7016 13 6 2.0124 -6.5912 -1.3104 14 6 1.1401 -7.5833 -1.7308 15 6 0.0648 -7.2407 -2.5291 16 7 -0.1381 -5.9877 -2.8859 17 6 0.6677 -5.0175 -2.4999 18 6 2.6523 -4.1386 1.2019 19 6 3.6371 -5.1290 1.2172 20 6 4.0541 -5.6246 2.4367 21 7 3.5125 -5.1495 3.5491 22 6 2.5800 -4.2098 3.5049 23 7 2.0387 -3.7402 4.6890 24 7 2.1519 -3.7089 2.3557 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.6882 -3.3886 -2.0264 29 1 3.6893 -4.5599 -1.1352 30 1 2.8633 -6.8300 -0.6898 31 1 1.3011 -8.6114 -1.4420 32 1 -0.6171 -8.0082 -2.8641 33 1 0.4690 -4.0029 -2.8120 34 1 4.0622 -5.4995 0.2960 35 1 4.8141 -6.3905 2.4836 36 1 2.3432 -4.0988 5.5372 37 1 1.3549 -3.0525 4.6705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122263991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = 102.216747 kcal Electronic energy + Delta-G solvation = -21966.479895 eV Core-core repulsion = 18744.276323 eV Total energy + Delta-G solvation = -3222.203572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.37656 -39.83856 -36.83168 -34.12415 -33.13717 -32.75062 -31.92375 -30.91777 -29.48554 -27.45642 -25.82027 -23.84971 -23.24462 -22.68191 -22.05388 -20.57860 -17.53999 -17.37166 -16.95490 -16.39141 -16.18652 -15.36824 -15.27832 -15.15763 -14.58361 -14.53853 -14.27335 -13.83630 -13.47072 -13.36852 -12.96418 -12.85440 -12.44254 -12.00816 -11.46242 -11.22185 -11.07676 -10.74396 -10.62858 -10.39175 -10.23169 -10.05288 -9.66119 -9.53428 -9.29277 -8.88514 -8.47366 -8.34545 -7.99614 -7.11639 -6.05978 -4.12268 1.21186 1.41512 1.90293 2.17593 3.28761 3.33599 3.35674 3.46461 3.87180 4.13302 4.40867 4.56282 4.68460 4.87187 4.95093 5.03108 5.10033 5.14941 5.26491 5.40170 5.48837 5.70626 5.71597 5.79846 5.93819 6.02462 6.17805 6.22996 6.40624 6.60570 6.84298 6.97618 7.35392 7.56085 7.61209 7.79667 7.88878 8.11865 8.17293 8.19100 8.27397 8.90924 9.18071 9.52294 11.00157 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.007124 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.111135 B = 3929.440777 C = 5859.801890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.253 3.747 10 N -0.570 5.570 11 C 0.166 3.834 12 C -0.149 4.149 13 C -0.063 4.063 14 C -0.179 4.179 15 C 0.092 3.908 16 N -0.487 5.487 17 C 0.120 3.880 18 C 0.489 3.511 19 C -0.365 4.365 20 C 0.203 3.797 21 N -0.628 5.628 22 C 0.596 3.404 23 N -0.828 5.828 24 N -0.603 5.603 25 H 0.264 0.736 26 H 0.029 0.971 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.407 0.593 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -13.347 -0.235 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.134 3.866 10 N -0.277 5.277 11 C 0.041 3.959 12 C -0.153 4.153 13 C -0.089 4.089 14 C -0.199 4.199 15 C -0.066 4.066 16 N -0.196 5.196 17 C -0.038 4.038 18 C 0.242 3.758 19 C -0.396 4.396 20 C 0.040 3.960 21 N -0.357 5.357 22 C 0.236 3.764 23 N -0.377 5.377 24 N -0.336 5.336 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.237 0.763 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.637 -12.572 -0.166 13.088 hybrid contribution 1.335 0.606 0.152 1.474 sum 4.973 -11.965 -0.014 12.958 Atomic orbital electron populations 1.69917 1.05907 1.27093 1.50215 1.24891 0.94812 0.98999 0.95111 0.86607 0.79535 0.82946 0.78588 1.20274 1.21206 1.20349 1.21383 0.93218 0.90578 1.51288 0.92644 1.19355 0.87094 0.81506 0.98629 1.47086 1.46314 1.34281 1.00024 1.20265 0.95129 0.93717 0.86780 1.21491 0.99078 0.95809 0.98909 1.21585 0.98766 0.92255 0.96324 1.22085 0.96913 1.00406 1.00516 1.22725 0.95695 0.93578 0.94576 1.67725 1.28759 1.00807 1.22281 1.22828 0.89370 0.98637 0.92938 1.18121 0.85915 0.85703 0.86106 1.21775 1.08479 1.09154 1.00200 1.22285 0.93345 0.93660 0.86670 1.67814 1.17047 1.18403 1.32414 1.18990 0.85786 0.85549 0.86098 1.41645 1.46020 1.46033 1.04007 1.67419 1.34855 1.34695 0.96594 0.92667 0.95303 0.93151 0.88390 0.90052 0.84858 0.85162 0.83221 0.82385 0.85274 0.82950 0.76292 0.75721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.21 9.39 -34.44 -0.32 -14.53 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.25 6.27 5.23 -5.19 -0.03 6.24 16 10 N -0.57 -11.55 2.54 -176.41 -0.45 -12.00 16 11 C 0.17 2.64 5.43 -5.19 -0.03 2.61 16 12 C -0.15 -2.23 5.48 -104.48 -0.57 -2.81 16 13 C -0.06 -0.82 9.69 -39.28 -0.38 -1.20 16 14 C -0.18 -2.12 10.11 -39.44 -0.40 -2.52 16 15 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 16 N -0.49 -7.72 10.36 -13.25 -0.14 -7.86 16 17 C 0.12 1.91 10.86 -17.55 -0.19 1.72 16 18 C 0.49 9.84 7.39 -154.85 -1.14 8.70 16 19 C -0.36 -5.89 8.67 -39.10 -0.34 -6.23 16 20 C 0.20 3.11 11.28 -17.31 -0.20 2.91 16 21 N -0.63 -10.99 10.45 -14.02 -0.15 -11.14 16 22 C 0.60 11.31 8.67 -322.89 -2.80 8.51 16 23 N -0.83 -12.47 9.07 29.75 0.27 -12.20 16 24 N -0.60 -13.08 9.24 -13.17 -0.12 -13.20 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.05 1.41 7.33 -51.93 -0.38 1.03 16 28 H 0.10 1.56 8.02 -51.93 -0.42 1.14 16 29 H 0.08 1.10 5.99 -51.93 -0.31 0.79 16 30 H 0.13 1.50 6.38 -52.49 -0.33 1.16 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 32 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 34 H 0.13 1.70 5.03 -52.48 -0.26 1.44 16 35 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.41 4.91 8.94 -40.82 -0.37 4.54 16 37 H 0.41 5.98 8.94 -40.82 -0.37 5.62 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -32.78 321.72 -10.81 -43.58 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.09 Total: 10.49 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -6.69 Total: 6.08 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: 0.15 Total: -81.32 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.78 -10.81 -43.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122263991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.799 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds