Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00130 * 2 1 4 4 H 1.48500 * 109.46797 * 240.00283 * 3 2 1 5 5 H 1.48501 * 109.46760 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47250 * 119.99954 * 3 2 1 7 7 C 1.37881 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99540 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46903 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99379 * 269.99503 * 10 9 7 12 12 C 1.50700 * 109.47107 * 269.99982 * 11 10 9 13 13 C 1.38671 * 120.41686 * 269.72256 * 12 11 10 14 14 C 1.38629 * 118.41595 * 179.78549 * 13 12 11 15 15 C 1.38230 * 119.16166 * 0.51222 * 14 13 12 16 16 N 1.31853 * 120.76585 * 359.72908 * 15 14 13 17 17 C 1.31891 * 121.72022 * 359.97438 * 16 15 14 18 18 C 1.38520 * 120.00374 * 89.99906 * 10 9 7 19 19 C 1.39683 * 120.48706 * 184.99827 * 18 10 9 20 20 C 1.38085 * 118.49205 * 180.02562 * 19 18 10 21 21 N 1.32524 * 119.29190 * 359.97438 * 20 19 18 22 22 C 1.32468 * 120.93030 * 0.02562 * 21 20 19 23 23 N 1.38397 * 119.17419 * 179.97438 * 22 21 20 24 24 N 1.32464 * 121.64542 * 0.02562 * 22 21 20 25 25 H 0.96998 * 120.00375 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47222 * 59.99561 * 9 7 2 27 27 H 1.09004 * 109.46816 * 299.99979 * 9 7 2 28 28 H 1.08997 * 109.46930 * 30.00781 * 11 10 9 29 29 H 1.08998 * 109.46480 * 150.00239 * 11 10 9 30 30 H 1.07992 * 120.79548 * 0.02786 * 13 12 11 31 31 H 1.08005 * 120.41870 * 180.22382 * 14 13 12 32 32 H 1.07997 * 119.61517 * 179.74922 * 15 14 13 33 33 H 1.08000 * 119.61073 * 180.02562 * 17 16 15 34 34 H 1.08004 * 120.75477 * 359.97438 * 19 18 10 35 35 H 1.07998 * 120.35470 * 180.02562 * 20 19 18 36 36 H 0.96996 * 119.99929 * 0.02562 * 23 22 21 37 37 H 0.97005 * 119.99778 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6799 -4.1700 -1.2665 12 6 1.7635 -5.2844 -1.7016 13 6 2.0124 -6.5912 -1.3104 14 6 1.1401 -7.5833 -1.7308 15 6 0.0648 -7.2407 -2.5291 16 7 -0.1381 -5.9877 -2.8859 17 6 0.6677 -5.0175 -2.4999 18 6 2.6523 -4.1386 1.2019 19 6 3.6371 -5.1290 1.2172 20 6 4.0541 -5.6246 2.4367 21 7 3.5125 -5.1495 3.5491 22 6 2.5800 -4.2098 3.5049 23 7 2.0387 -3.7402 4.6890 24 7 2.1519 -3.7089 2.3557 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.6882 -3.3886 -2.0264 29 1 3.6893 -4.5599 -1.1352 30 1 2.8633 -6.8300 -0.6898 31 1 1.3011 -8.6114 -1.4420 32 1 -0.6171 -8.0082 -2.8641 33 1 0.4690 -4.0029 -2.8120 34 1 4.0622 -5.4995 0.2960 35 1 4.8141 -6.3905 2.4836 36 1 2.3432 -4.0988 5.5372 37 1 1.3549 -3.0525 4.6705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122263991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = 82.293023 kcal Electronic energy + Delta-G solvation = -21967.343853 eV Core-core repulsion = 18744.276323 eV Total energy + Delta-G solvation = -3223.067530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68235 -40.98330 -38.26981 -35.46013 -34.85475 -34.24468 -33.10550 -32.21799 -30.93011 -29.10223 -27.23062 -25.45723 -24.41326 -23.98190 -23.45157 -21.96600 -18.89384 -18.79030 -18.51963 -17.89656 -17.32936 -16.78928 -16.62987 -16.40779 -16.24916 -15.87434 -15.56201 -15.26312 -14.73930 -14.57624 -14.29754 -14.17226 -13.90831 -13.35102 -13.25737 -12.80735 -12.72503 -12.51517 -12.18547 -12.14508 -11.71380 -11.45749 -11.42429 -10.74286 -10.59478 -10.39446 -9.97771 -9.77005 -9.38305 -8.61960 -8.11707 -6.31321 0.13940 0.37329 0.61987 0.78447 1.37508 1.39470 1.47239 2.12172 2.39387 2.62197 2.97060 3.11880 3.28979 3.56215 3.68167 3.87024 3.89491 4.08967 4.10451 4.16808 4.39843 4.49164 4.57703 4.71588 4.81651 4.87319 4.91372 5.01527 5.21496 5.29543 5.34951 5.58298 5.69826 5.81396 5.95661 6.12626 6.24844 6.57202 6.68527 6.78978 6.89424 7.04604 7.37717 7.83920 8.88250 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.007124 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.111135 B = 3929.440777 C = 5859.801890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.532 4.532 8 H 0.049 0.951 9 C 0.278 3.722 10 N -0.580 5.580 11 C 0.168 3.832 12 C -0.157 4.157 13 C -0.062 4.062 14 C -0.168 4.168 15 C 0.083 3.917 16 N -0.517 5.517 17 C 0.094 3.906 18 C 0.461 3.539 19 C -0.355 4.355 20 C 0.207 3.793 21 N -0.630 5.630 22 C 0.578 3.422 23 N -0.817 5.817 24 N -0.652 5.652 25 H 0.265 0.735 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.159 0.841 31 H 0.171 0.829 32 H 0.181 0.819 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.204 0.796 36 H 0.421 0.579 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.260 -15.634 0.117 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.156 3.844 10 N -0.289 5.289 11 C 0.044 3.956 12 C -0.161 4.161 13 C -0.089 4.089 14 C -0.187 4.187 15 C -0.074 4.074 16 N -0.226 5.226 17 C -0.062 4.062 18 C 0.216 3.784 19 C -0.386 4.386 20 C 0.044 3.956 21 N -0.359 5.359 22 C 0.217 3.783 23 N -0.367 5.367 24 N -0.387 5.387 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.104 0.896 29 H 0.130 0.870 30 H 0.176 0.824 31 H 0.188 0.812 32 H 0.198 0.802 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.221 0.779 36 H 0.253 0.747 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.943 -14.885 0.202 16.029 hybrid contribution 0.614 1.178 0.098 1.332 sum 6.557 -13.707 0.300 15.198 Atomic orbital electron populations 1.70043 1.07394 1.27906 1.51251 1.25714 0.95595 1.02474 0.94764 0.85594 0.78331 0.78839 0.78750 1.18977 1.20652 1.20452 1.21629 0.92954 0.91844 1.50707 0.93255 1.18656 0.87314 0.82824 0.95582 1.46913 1.46238 1.33878 1.01836 1.20394 0.96683 0.93778 0.84702 1.21369 0.98719 0.96655 0.99358 1.21901 0.99663 0.91315 0.96000 1.22512 0.95431 1.02030 0.98728 1.23340 0.96685 0.93022 0.94326 1.67680 1.29370 1.02089 1.23476 1.22678 0.90666 0.98301 0.94589 1.18600 0.87245 0.87100 0.85429 1.22038 1.06876 1.07549 1.02127 1.23150 0.93217 0.93638 0.85560 1.67959 1.16594 1.17876 1.33480 1.19344 0.86489 0.86183 0.86244 1.41644 1.45554 1.45655 1.03830 1.67343 1.36671 1.36590 0.98065 0.92624 0.97225 0.97260 0.89584 0.86982 0.82387 0.81168 0.80224 0.84371 0.81978 0.77937 0.74671 0.75715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 2 C 0.01 0.77 5.46 84.66 0.46 1.23 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.53 -29.80 9.39 25.60 0.24 -29.56 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.28 14.54 5.23 85.64 0.45 14.99 16 10 N -0.58 -24.02 2.54 -712.04 -1.81 -25.83 16 11 C 0.17 5.31 5.43 85.63 0.46 5.77 16 12 C -0.16 -4.65 5.48 -19.78 -0.11 -4.76 16 13 C -0.06 -1.45 9.69 22.47 0.22 -1.23 16 14 C -0.17 -3.38 10.11 22.36 0.23 -3.15 16 15 C 0.08 2.00 11.18 84.69 0.95 2.95 16 16 N -0.52 -16.54 10.36 -195.84 -2.03 -18.57 16 17 C 0.09 3.15 10.86 84.67 0.92 4.07 16 18 C 0.46 18.41 7.39 133.21 0.98 19.39 16 19 C -0.36 -10.39 8.67 22.58 0.20 -10.20 16 20 C 0.21 5.51 11.28 84.55 0.95 6.46 16 21 N -0.63 -20.56 10.45 -198.27 -2.07 -22.63 16 22 C 0.58 21.61 8.67 261.52 2.27 23.87 16 23 N -0.82 -24.42 9.07 -59.79 -0.54 -24.96 16 24 N -0.65 -28.73 9.24 -195.57 -1.81 -30.54 16 25 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 26 H 0.01 0.54 8.07 -2.39 -0.02 0.52 16 27 H 0.01 0.56 7.33 -2.38 -0.02 0.54 16 28 H 0.09 2.86 8.02 -2.39 -0.02 2.84 16 29 H 0.11 2.76 5.99 -2.39 -0.01 2.75 16 30 H 0.16 2.81 6.38 -2.91 -0.02 2.79 16 31 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.18 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.16 3.51 5.03 -2.91 -0.01 3.50 16 35 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.42 9.77 8.94 -92.71 -0.83 8.94 16 37 H 0.41 12.23 8.94 -92.70 -0.83 11.40 16 Total: -1.00 -74.62 321.72 1.74 -72.88 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.53 Total: 28.24 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 8.22 Total: 29.85 kcal Atomic # 7 Polarization: -169.51 SS G_CDS: -7.98 Total: -177.49 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -74.62 1.74 -72.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122263991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.172 kcal (2) G-P(sol) polarization free energy of solvation -74.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds