Wall clock time and date at job start Tue Mar 31 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46996 * 2 1 4 4 N 1.30829 * 125.89079 * 270.21465 * 3 2 1 5 5 N 1.40082 * 108.23614 * 180.25742 * 4 3 2 6 6 C 1.46505 * 126.03854 * 179.75598 * 5 4 3 7 7 C 1.34990 * 107.92668 * 359.71401 * 5 4 3 8 8 Cl 1.73596 * 126.13998 * 179.97438 * 7 5 4 9 9 C 1.35457 * 107.71463 * 0.02562 * 7 5 4 10 10 C 1.50701 * 126.04980 * 179.97438 * 9 7 5 11 11 N 1.46899 * 109.47353 * 97.03606 * 10 9 7 12 12 C 1.46900 * 110.99968 * 288.07381 * 11 10 9 13 13 C 1.52997 * 109.47054 * 291.65796 * 12 11 10 14 14 C 1.46900 * 111.00260 * 164.11603 * 11 10 9 15 15 C 1.50703 * 109.46853 * 190.00342 * 14 11 10 16 16 H 1.07996 * 119.99968 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99452 * 180.02562 * 15 14 11 18 18 N 1.31513 * 120.00290 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99710 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47365 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47364 * 119.99823 * 19 17 15 22 22 H 1.48507 * 109.47433 * 239.99874 * 19 17 15 23 23 H 1.09006 * 109.47000 * 60.00248 * 1 2 3 24 24 H 1.08999 * 109.46670 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47362 * 299.99472 * 1 2 3 26 26 H 1.09002 * 109.47290 * 240.00128 * 2 1 3 27 27 H 1.08997 * 109.47211 * 119.99902 * 2 1 3 28 28 H 1.09003 * 109.46695 * 269.95743 * 6 5 4 29 29 H 1.08997 * 109.47181 * 29.95264 * 6 5 4 30 30 H 1.09001 * 109.47027 * 149.95611 * 6 5 4 31 31 H 1.09002 * 109.46919 * 337.04009 * 10 9 7 32 32 H 1.09002 * 109.47558 * 217.03580 * 10 9 7 33 33 H 1.09004 * 109.47041 * 51.65604 * 12 11 10 34 34 H 1.08994 * 109.47122 * 171.65870 * 12 11 10 35 35 H 1.09007 * 109.47493 * 60.07237 * 13 12 11 36 36 H 1.08995 * 109.47464 * 180.02562 * 13 12 11 37 37 H 1.09002 * 109.46991 * 300.07329 * 13 12 11 38 38 H 1.08996 * 109.46876 * 309.99813 * 14 11 10 39 39 H 1.08998 * 109.46995 * 70.00402 * 14 11 10 40 40 H 0.97001 * 119.99976 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2843 2.1453 -1.0599 5 7 2.7363 3.4013 -0.6351 6 6 3.1334 4.5131 -1.5026 7 6 2.7405 3.4066 0.7148 8 17 3.2184 4.7297 1.7319 9 6 2.3061 2.1937 1.1331 10 6 2.1509 1.7529 2.5659 11 7 0.7523 1.9224 2.9817 12 6 0.4203 3.3439 3.1457 13 6 1.1767 3.9086 4.3498 14 6 0.4744 1.1713 4.2132 15 6 -1.0099 1.1652 4.4737 16 1 -1.6797 1.6691 3.7928 17 6 -1.5125 0.5170 5.5820 18 7 -0.6967 -0.0962 6.4114 19 14 -3.3523 0.5099 5.9054 20 1 -4.0465 1.2655 4.8318 21 1 -3.8462 -0.8904 5.9245 22 1 -3.6269 1.1496 7.2172 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1993 4.4419 -1.7194 29 1 2.5693 4.4666 -2.4340 30 1 2.9272 5.4579 -0.9996 31 1 2.7954 2.3578 3.2038 32 1 2.4321 0.7037 2.6558 33 1 0.7078 3.8902 2.2473 34 1 -0.6522 3.4502 3.3080 35 1 2.2494 3.8035 4.1870 36 1 0.9301 4.9633 4.4719 37 1 0.8903 3.3615 5.2480 38 1 0.8279 0.1464 4.1012 39 1 0.9883 1.6435 5.0505 40 1 -1.0504 -0.5525 7.1909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127589466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:46 Heat of formation + Delta-G solvation = 69.912654 kcal Electronic energy + Delta-G solvation = -21342.954589 eV Core-core repulsion = 18220.457700 eV Total energy + Delta-G solvation = -3122.496889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.23901 -37.16362 -36.78035 -34.49489 -32.59995 -31.66341 -30.59394 -29.15150 -27.54448 -26.13855 -24.23480 -23.28218 -22.73712 -20.68276 -19.79013 -18.80416 -16.75083 -16.12199 -15.80760 -15.25740 -14.74705 -14.45906 -14.25820 -13.82767 -13.66633 -13.23118 -13.01936 -12.78875 -12.66054 -12.27268 -11.97989 -11.75724 -11.52543 -11.47770 -11.25634 -11.09179 -11.03934 -10.85511 -10.67411 -10.58756 -10.48184 -10.18358 -9.90383 -9.69171 -9.13492 -8.98876 -8.38346 -8.19007 -7.05223 -5.96874 -3.96726 1.56871 1.76173 2.70630 2.83141 3.34118 3.42042 3.46861 4.41871 4.48834 4.97612 5.00683 5.21449 5.24361 5.28990 5.39516 5.41714 5.70870 5.77452 5.84159 5.92785 6.01941 6.06812 6.17336 6.29454 6.34068 6.36854 6.46357 6.59163 6.76594 6.81137 6.83316 6.92782 7.03924 7.40182 7.52457 7.74202 7.88628 8.17978 8.31841 8.64719 9.11635 9.67156 11.13839 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.020137 B = 0.005401 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.141106 B = 5182.713696 C = 6022.177680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C 0.108 3.892 4 N -0.283 5.283 5 N -0.376 5.376 6 C 0.102 3.898 7 C 0.117 3.883 8 Cl -0.010 7.010 9 C -0.176 4.176 10 C 0.121 3.879 11 N -0.524 5.524 12 C 0.066 3.934 13 C -0.187 4.187 14 C 0.188 3.812 15 C -0.498 4.498 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.287 1.287 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.028 0.972 39 H 0.000 1.000 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.641 7.561 -12.667 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 C -0.058 4.058 4 N -0.106 5.106 5 N -0.161 5.161 6 C -0.039 4.039 7 C -0.036 4.036 8 Cl 0.018 6.982 9 C -0.189 4.189 10 C -0.008 4.008 11 N -0.248 5.248 12 C -0.062 4.062 13 C -0.245 4.245 14 C 0.063 3.937 15 C -0.537 4.537 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.213 1.213 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.018 0.982 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.440 7.563 -14.144 18.124 hybrid contribution -0.332 0.686 1.829 1.981 sum 8.108 8.249 -12.315 16.895 Atomic orbital electron populations 1.21729 0.93362 1.01960 1.03444 1.19941 0.97122 0.87762 1.02755 1.22150 0.97019 0.97291 0.89328 1.77421 1.21713 0.89597 1.21883 1.48369 1.52913 1.12253 1.02614 1.21825 1.01190 0.86027 0.94905 1.21432 1.06461 0.92067 0.83649 1.98386 1.90271 1.45222 1.64340 1.19745 1.09492 0.91822 0.97800 1.20375 0.91923 1.00361 0.88171 1.62318 1.17003 1.09071 1.36402 1.21880 1.00393 0.88812 0.95162 1.22379 1.00056 1.00119 1.01975 1.19816 0.96754 0.92700 0.84384 1.21172 0.92024 1.32810 1.07669 0.91997 1.24941 0.97698 0.95700 0.96180 1.69963 1.34258 1.35671 1.14064 0.86531 0.85810 0.77656 0.77942 1.19749 1.21130 1.21304 0.93613 0.92447 0.89472 0.91254 0.89573 0.90803 0.89032 0.89707 0.94457 0.90471 0.93430 0.90785 0.93695 0.93978 0.90937 0.95412 0.98209 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.90 37.16 0.37 -1.86 16 2 C -0.04 -0.53 6.31 -27.88 -0.18 -0.70 16 3 C 0.11 1.76 6.47 -82.41 -0.53 1.22 16 4 N -0.28 -4.54 12.57 33.67 0.42 -4.11 16 5 N -0.38 -5.33 4.01 -64.90 -0.26 -5.59 16 6 C 0.10 0.95 11.31 59.85 0.68 1.62 16 7 C 0.12 1.77 6.66 -17.16 -0.11 1.65 16 8 Cl -0.01 -0.13 26.51 -51.86 -1.37 -1.51 16 9 C -0.18 -2.94 5.01 -105.01 -0.53 -3.47 16 10 C 0.12 2.19 5.00 -4.98 -0.02 2.16 16 11 N -0.52 -10.85 4.65 -237.52 -1.10 -11.96 16 12 C 0.07 1.29 5.69 -3.83 -0.02 1.27 16 13 C -0.19 -3.43 9.11 37.16 0.34 -3.09 16 14 C 0.19 4.66 4.38 -4.97 -0.02 4.64 16 15 C -0.50 -13.50 8.57 -34.44 -0.30 -13.80 16 16 H 0.06 1.69 7.10 -52.49 -0.37 1.32 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 1.23 7.41 -51.93 -0.38 0.85 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.67 7.81 -51.93 -0.41 0.26 16 31 H 0.04 0.67 5.72 -51.93 -0.30 0.37 16 32 H 0.08 1.39 7.14 -51.93 -0.37 1.01 16 33 H 0.05 0.87 5.72 -51.93 -0.30 0.57 16 34 H 0.07 1.57 6.99 -51.93 -0.36 1.21 16 35 H 0.04 0.77 5.75 -51.93 -0.30 0.48 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.54 6.21 -51.93 -0.32 1.22 16 38 H 0.03 0.74 7.86 -51.93 -0.41 0.33 16 39 H 0.00 0.01 5.89 -51.93 -0.31 -0.30 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -29.99 334.64 -7.90 -37.90 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.92 Total: -1.85 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.43 Total: -8.91 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.20 Total: -47.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.37 Total: -1.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.99 -7.90 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127589466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.810 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds