Wall clock time and date at job start Tue Mar 31 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46996 * 2 1 4 4 N 1.30829 * 125.89079 * 270.21465 * 3 2 1 5 5 N 1.40082 * 108.23614 * 180.25742 * 4 3 2 6 6 C 1.46505 * 126.03854 * 179.75598 * 5 4 3 7 7 C 1.34990 * 107.92668 * 359.71401 * 5 4 3 8 8 Cl 1.73596 * 126.13998 * 179.97438 * 7 5 4 9 9 C 1.35457 * 107.71463 * 0.02562 * 7 5 4 10 10 C 1.50701 * 126.04980 * 179.97438 * 9 7 5 11 11 N 1.46899 * 109.47353 * 97.03606 * 10 9 7 12 12 C 1.46900 * 110.99968 * 288.07381 * 11 10 9 13 13 C 1.52997 * 109.47054 * 291.65796 * 12 11 10 14 14 C 1.46900 * 111.00260 * 164.11603 * 11 10 9 15 15 C 1.50703 * 109.46853 * 190.00342 * 14 11 10 16 16 H 1.07996 * 119.99968 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99452 * 180.02562 * 15 14 11 18 18 N 1.31513 * 120.00290 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99710 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47365 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47364 * 119.99823 * 19 17 15 22 22 H 1.48507 * 109.47433 * 239.99874 * 19 17 15 23 23 H 1.09006 * 109.47000 * 60.00248 * 1 2 3 24 24 H 1.08999 * 109.46670 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47362 * 299.99472 * 1 2 3 26 26 H 1.09002 * 109.47290 * 240.00128 * 2 1 3 27 27 H 1.08997 * 109.47211 * 119.99902 * 2 1 3 28 28 H 1.09003 * 109.46695 * 269.95743 * 6 5 4 29 29 H 1.08997 * 109.47181 * 29.95264 * 6 5 4 30 30 H 1.09001 * 109.47027 * 149.95611 * 6 5 4 31 31 H 1.09002 * 109.46919 * 337.04009 * 10 9 7 32 32 H 1.09002 * 109.47558 * 217.03580 * 10 9 7 33 33 H 1.09004 * 109.47041 * 51.65604 * 12 11 10 34 34 H 1.08994 * 109.47122 * 171.65870 * 12 11 10 35 35 H 1.09007 * 109.47493 * 60.07237 * 13 12 11 36 36 H 1.08995 * 109.47464 * 180.02562 * 13 12 11 37 37 H 1.09002 * 109.46991 * 300.07329 * 13 12 11 38 38 H 1.08996 * 109.46876 * 309.99813 * 14 11 10 39 39 H 1.08998 * 109.46995 * 70.00402 * 14 11 10 40 40 H 0.97001 * 119.99976 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2843 2.1453 -1.0599 5 7 2.7363 3.4013 -0.6351 6 6 3.1334 4.5131 -1.5026 7 6 2.7405 3.4066 0.7148 8 17 3.2184 4.7297 1.7319 9 6 2.3061 2.1937 1.1331 10 6 2.1509 1.7529 2.5659 11 7 0.7523 1.9224 2.9817 12 6 0.4203 3.3439 3.1457 13 6 1.1767 3.9086 4.3498 14 6 0.4744 1.1713 4.2132 15 6 -1.0099 1.1652 4.4737 16 1 -1.6797 1.6691 3.7928 17 6 -1.5125 0.5170 5.5820 18 7 -0.6967 -0.0962 6.4114 19 14 -3.3523 0.5099 5.9054 20 1 -4.0465 1.2655 4.8318 21 1 -3.8462 -0.8904 5.9245 22 1 -3.6269 1.1496 7.2172 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1993 4.4419 -1.7194 29 1 2.5693 4.4666 -2.4340 30 1 2.9272 5.4579 -0.9996 31 1 2.7954 2.3578 3.2038 32 1 2.4321 0.7037 2.6558 33 1 0.7078 3.8902 2.2473 34 1 -0.6522 3.4502 3.3080 35 1 2.2494 3.8035 4.1870 36 1 0.9301 4.9633 4.4719 37 1 0.8903 3.3615 5.2480 38 1 0.8279 0.1464 4.1012 39 1 0.9883 1.6435 5.0505 40 1 -1.0504 -0.5525 7.1909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127589466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:46 Heat of formation + Delta-G solvation = 51.522887 kcal Electronic energy + Delta-G solvation = -21343.752029 eV Core-core repulsion = 18220.457700 eV Total energy + Delta-G solvation = -3123.294329 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.41898 -38.79553 -37.92140 -35.65132 -34.64749 -32.83201 -31.89530 -30.80557 -29.05103 -27.55395 -25.68665 -24.95316 -24.12035 -21.95819 -21.26237 -20.17125 -18.29216 -17.78868 -17.04704 -16.79082 -16.41552 -15.93422 -15.65017 -15.25933 -14.94758 -14.62001 -14.36038 -14.00321 -13.86227 -13.59360 -13.40378 -13.20871 -13.02640 -12.91538 -12.66465 -12.59078 -12.43870 -12.42238 -12.36637 -12.24294 -11.89936 -11.78074 -11.44813 -11.33783 -11.15333 -10.51385 -10.11881 -9.43064 -8.76189 -8.10246 -6.17397 0.41935 0.58628 1.43289 1.45045 1.55737 1.58411 1.70933 2.46888 3.22758 3.35433 3.63982 3.96378 4.04271 4.26126 4.34912 4.36010 4.43332 4.51685 4.59214 4.59683 4.62589 4.72005 4.78030 4.84628 4.94264 5.05971 5.09774 5.17353 5.26171 5.34387 5.48068 5.53812 5.58691 5.64369 5.76542 5.78297 6.18733 6.50226 6.56022 6.78351 6.99350 7.51199 9.00166 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.020137 B = 0.005401 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.141106 B = 5182.713696 C = 6022.177680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 C 0.098 3.902 4 N -0.296 5.296 5 N -0.370 5.370 6 C 0.089 3.911 7 C 0.121 3.879 8 Cl 0.008 6.992 9 C -0.202 4.202 10 C 0.129 3.871 11 N -0.527 5.527 12 C 0.071 3.929 13 C -0.175 4.175 14 C 0.206 3.794 15 C -0.507 4.507 16 H 0.056 0.944 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.957 3.043 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.282 1.282 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.003 0.997 39 H -0.020 1.020 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.751 8.862 -14.054 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 C -0.067 4.067 4 N -0.120 5.120 5 N -0.154 5.154 6 C -0.050 4.050 7 C -0.034 4.034 8 Cl 0.036 6.964 9 C -0.215 4.215 10 C 0.000 4.000 11 N -0.250 5.250 12 C -0.057 4.057 13 C -0.234 4.234 14 C 0.080 3.920 15 C -0.545 4.545 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.574 5.574 19 Si 0.783 3.217 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.208 1.208 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.021 0.979 39 H -0.002 1.002 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.559 8.884 -15.565 19.861 hybrid contribution -0.282 0.379 2.188 2.239 sum 8.277 9.263 -13.377 18.255 Atomic orbital electron populations 1.21618 0.93958 1.02314 1.01779 1.19962 0.96465 0.87466 1.03556 1.22321 0.97208 0.97898 0.89256 1.77372 1.22220 0.90453 1.21907 1.48750 1.51421 1.12519 1.02737 1.22266 1.02731 0.85072 0.94940 1.21483 1.05375 0.92080 0.84445 1.98392 1.89996 1.44086 1.63892 1.19591 1.11928 0.93103 0.96894 1.20249 0.90075 1.00212 0.89453 1.62209 1.19204 1.09588 1.34019 1.21823 0.99316 0.88259 0.96352 1.22240 1.00456 1.00909 0.99764 1.19436 0.95402 0.91704 0.85437 1.21417 0.93131 1.32434 1.07538 0.92538 1.25724 1.02061 0.95357 0.96003 1.70077 1.36215 1.36538 1.14610 0.85517 0.80549 0.77767 0.77867 1.19126 1.20652 1.20834 0.93276 0.91132 0.92903 0.89190 0.89981 0.88710 0.87694 0.88052 0.94289 0.91097 0.91724 0.92836 0.92598 0.91650 0.94222 0.97902 1.00224 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.90 71.98 0.71 -3.46 16 2 C -0.04 -1.01 6.31 29.85 0.19 -0.82 16 3 C 0.10 3.11 6.47 43.10 0.28 3.39 16 4 N -0.30 -8.98 12.57 -47.39 -0.60 -9.57 16 5 N -0.37 -9.62 4.01 -359.25 -1.44 -11.06 16 6 C 0.09 1.38 11.31 127.77 1.44 2.82 16 7 C 0.12 3.44 6.66 83.56 0.56 3.99 16 8 Cl 0.01 0.20 26.51 -2.72 -0.07 0.13 16 9 C -0.20 -6.62 5.01 -20.11 -0.10 -6.72 16 10 C 0.13 4.70 5.00 85.56 0.43 5.13 16 11 N -0.53 -22.23 4.65 -905.37 -4.21 -26.44 16 12 C 0.07 2.75 5.69 86.30 0.49 3.24 16 13 C -0.18 -6.36 9.11 71.98 0.66 -5.70 16 14 C 0.21 10.59 4.38 85.56 0.38 10.96 16 15 C -0.51 -28.09 8.57 25.60 0.22 -27.87 16 16 H 0.06 3.14 7.10 -2.91 -0.02 3.12 16 17 C 0.01 0.35 5.46 84.65 0.46 0.81 16 18 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 19 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.08 2.37 7.41 -2.39 -0.02 2.35 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.25 7.81 -2.39 -0.02 1.23 16 31 H 0.04 1.39 5.72 -2.39 -0.01 1.38 16 32 H 0.07 2.63 7.14 -2.39 -0.02 2.61 16 33 H 0.06 2.29 5.72 -2.38 -0.01 2.27 16 34 H 0.05 2.29 6.99 -2.39 -0.02 2.27 16 35 H 0.06 1.88 5.75 -2.38 -0.01 1.87 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.70 6.21 -2.39 -0.01 1.69 16 38 H 0.00 0.16 7.86 -2.39 -0.02 0.14 16 39 H -0.02 -1.09 5.89 -2.39 -0.01 -1.10 16 40 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -64.53 334.64 2.74 -61.79 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.04 Total: 8.09 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 5.71 Total: -14.22 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -5.96 Total: -102.16 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -0.07 Total: 0.13 kcal Total: -64.53 2.74 -61.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127589466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.316 kcal (2) G-P(sol) polarization free energy of solvation -64.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds