Wall clock time and date at job start Tue Mar 31 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46608 * 116.38579 * 3 2 1 5 5 N 1.46901 * 109.46739 * 179.43579 * 4 3 2 6 6 C 1.46899 * 111.00071 * 287.98927 * 5 4 3 7 7 C 1.50701 * 109.47286 * 160.35912 * 6 5 4 8 8 H 1.07996 * 119.99755 * 4.65650 * 7 6 5 9 9 C 1.37879 * 119.99919 * 184.66013 * 7 6 5 10 10 N 1.31515 * 119.99807 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 119.99991 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47120 * 59.99685 * 11 9 7 13 13 H 1.48503 * 109.47200 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47245 * 299.99832 * 11 9 7 15 15 C 1.46898 * 110.99838 * 164.02992 * 5 4 3 16 16 C 1.50696 * 109.47314 * 293.95222 * 15 5 4 17 17 C 1.35456 * 126.41716 * 95.00361 * 16 15 5 18 18 N 1.33346 * 108.60808 * 179.97438 * 17 16 15 19 19 C 1.32306 * 109.13781 * 359.97438 * 18 17 16 20 20 C 1.40918 * 133.24654 * 179.97438 * 19 18 17 21 21 N 1.31136 * 119.70093 * 179.97438 * 20 19 18 22 22 C 1.33525 * 121.37033 * 359.97438 * 21 20 19 23 23 C 1.34994 * 121.25303 * 0.25100 * 22 21 20 24 24 N 1.36035 * 126.42420 * 275.00102 * 16 15 5 25 25 H 1.08997 * 109.47027 * 356.38256 * 3 2 1 26 26 H 1.09003 * 109.46803 * 236.37988 * 3 2 1 27 27 H 1.08993 * 109.47244 * 59.43460 * 4 3 2 28 28 H 1.08996 * 109.47301 * 299.43099 * 4 3 2 29 29 H 1.09002 * 109.46499 * 280.35570 * 6 5 4 30 30 H 1.08998 * 109.47146 * 40.35246 * 6 5 4 31 31 H 0.97000 * 119.99710 * 180.02562 * 10 9 7 32 32 H 1.09006 * 109.46733 * 173.95469 * 15 5 4 33 33 H 1.09004 * 109.47380 * 53.95723 * 15 5 4 34 34 H 1.08001 * 125.69920 * 359.97438 * 17 16 15 35 35 H 1.07993 * 120.14870 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.36859 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.13330 * 179.69191 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1177 0.6420 -1.2923 5 7 4.5866 0.6549 -1.2863 6 6 5.1005 1.6428 -0.3283 7 6 6.5314 1.3150 0.0127 8 1 7.0348 0.5043 -0.4930 9 6 7.1977 2.0499 0.9702 10 7 6.5847 3.0374 1.5856 11 14 8.9710 1.6431 1.3934 12 1 9.8148 1.7861 0.1798 13 1 9.4547 2.5727 2.4456 14 1 9.0532 0.2465 1.8916 15 6 5.1164 0.9030 -2.6337 16 6 4.7718 -0.2579 -3.5307 17 6 3.7023 -0.3456 -4.3573 18 7 3.7436 -1.5223 -4.9831 19 6 4.8117 -2.1908 -4.5798 20 6 5.3370 -3.4577 -4.9037 21 7 6.4426 -3.8685 -4.3305 22 6 7.0878 -3.1099 -3.4411 23 6 6.6241 -1.8909 -3.0930 24 7 5.4764 -1.4140 -3.6620 25 1 2.9719 -1.0248 0.0648 26 1 2.9711 0.5698 0.8558 27 1 2.7456 1.6641 -1.3619 28 1 2.7630 0.0671 -2.1477 29 1 5.0513 2.6377 -0.7709 30 1 4.4961 1.6183 0.5785 31 1 7.0536 3.5547 2.2590 32 1 6.1996 1.0142 -2.5834 33 1 4.6757 1.8157 -3.0351 34 1 2.9428 0.4112 -4.4877 35 1 4.8314 -4.0873 -5.6208 36 1 7.9956 -3.4806 -2.9884 37 1 7.1579 -1.2945 -2.3679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152828574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:56 Heat of formation + Delta-G solvation = 134.121363 kcal Electronic energy + Delta-G solvation = -21801.912224 eV Core-core repulsion = 18581.092139 eV Total energy + Delta-G solvation = -3220.820084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.02945 -38.55855 -37.52605 -36.15247 -34.21939 -32.87836 -31.64675 -30.51375 -29.77909 -27.24383 -25.67572 -24.28210 -23.36148 -22.78073 -21.33786 -20.32218 -18.00195 -17.46490 -17.20764 -16.71083 -16.14362 -15.55018 -15.29856 -14.96450 -14.65839 -14.33564 -14.16748 -13.94848 -13.68439 -13.09179 -12.90490 -12.74141 -12.51289 -12.21531 -12.19922 -11.62131 -11.55086 -11.51106 -11.14739 -11.00946 -10.84643 -10.53773 -10.21376 -9.96812 -9.94032 -9.51723 -8.91914 -8.61807 -8.00484 -7.63716 -6.21784 -4.24970 0.56344 1.23652 2.48453 2.81673 2.94163 2.98298 3.19091 3.25741 3.26387 3.58547 4.07151 4.09191 4.26123 4.28254 4.36286 4.80577 4.87102 5.14675 5.15717 5.19989 5.27629 5.32354 5.43651 5.46584 5.63445 5.74968 5.98686 6.02734 6.11669 6.18632 6.36012 6.54294 6.82504 6.87662 7.05012 7.52558 7.61470 7.72269 7.77700 7.80761 7.90148 8.23401 8.79830 9.40289 10.88282 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.006449 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.697434 B = 4340.570295 C = 6265.958622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.219 3.781 3 C -0.025 4.025 4 C 0.057 3.943 5 N -0.532 5.532 6 C 0.189 3.811 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.133 3.867 16 C -0.016 4.016 17 C 0.028 3.972 18 N -0.467 5.467 19 C 0.147 3.853 20 C 0.185 3.815 21 N -0.465 5.465 22 C 0.020 3.980 23 C 0.038 3.962 24 N -0.335 5.335 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.038 0.962 28 H 0.071 0.929 29 H -0.004 1.004 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.176 0.824 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 -7.331 -8.966 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.099 4.099 3 C -0.065 4.065 4 C -0.073 4.073 5 N -0.257 5.257 6 C 0.065 3.935 7 C -0.551 4.551 8 H 0.077 0.923 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.201 1.201 15 C 0.005 3.995 16 C -0.134 4.134 17 C -0.126 4.126 18 N -0.189 5.189 19 C -0.097 4.097 20 C 0.002 3.998 21 N -0.176 5.176 22 C -0.118 4.118 23 C -0.087 4.087 24 N -0.008 5.008 25 H 0.129 0.871 26 H 0.135 0.865 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.014 0.986 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.198 0.802 35 H 0.200 0.800 36 H 0.193 0.807 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.521 -8.666 -9.241 12.760 hybrid contribution 1.413 1.842 1.049 2.547 sum -0.108 -6.825 -8.192 10.663 Atomic orbital electron populations 1.81165 1.13185 1.09731 1.09275 1.29408 0.95433 0.92443 0.92616 1.19332 0.80207 1.05260 1.01750 1.21944 0.90390 0.99068 0.95939 1.62106 1.04432 1.53605 1.05567 1.19883 0.96040 0.87645 0.89969 1.20982 0.96391 1.16150 1.21529 0.92260 1.24955 0.98349 0.94996 0.95953 1.69916 1.37226 1.20096 1.26017 0.86608 0.84571 0.78354 0.78174 1.20284 1.21273 1.20104 1.20410 1.02143 0.89911 0.87073 1.21586 0.96268 0.89883 1.05620 1.22442 0.97979 0.95877 0.96315 1.70503 1.16882 1.05703 1.25813 1.22027 0.94038 0.96922 0.96686 1.22657 0.91109 0.89142 0.96922 1.68119 1.07196 1.34023 1.08293 1.22113 1.01588 0.90397 0.97681 1.22814 0.87867 0.98014 0.99959 1.42601 1.17093 1.13781 1.27356 0.87105 0.86477 0.94347 0.91033 0.98619 0.94045 0.92614 0.88648 0.92455 0.80186 0.80018 0.80657 0.80404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.70 18.54 42.16 0.78 -6.92 16 2 C 0.22 3.21 15.43 -20.76 -0.32 2.89 16 3 C -0.03 -0.34 5.78 -29.51 -0.17 -0.51 16 4 C 0.06 0.81 4.78 -3.82 -0.02 0.79 16 5 N -0.53 -8.89 4.37 -237.52 -1.04 -9.93 16 6 C 0.19 3.98 4.59 -4.98 -0.02 3.96 16 7 C -0.51 -12.09 8.61 -34.44 -0.30 -12.38 16 8 H 0.06 1.35 7.66 -52.49 -0.40 0.95 16 9 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.89 -23.81 13.29 55.43 0.74 -23.08 16 11 Si 0.90 19.35 29.54 -169.99 -5.02 14.33 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 13 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 15 C 0.13 2.02 5.25 -4.98 -0.03 2.00 16 16 C -0.02 -0.22 5.84 -81.72 -0.48 -0.70 16 17 C 0.03 0.38 10.36 -17.89 -0.19 0.20 16 18 N -0.47 -7.00 11.30 -12.72 -0.14 -7.15 16 19 C 0.15 2.10 7.85 -155.97 -1.22 0.87 16 20 C 0.18 2.23 11.34 -16.84 -0.19 2.04 16 21 N -0.46 -5.77 10.42 -13.13 -0.14 -5.90 16 22 C 0.02 0.23 11.07 -17.97 -0.20 0.03 16 23 C 0.04 0.49 10.96 -16.54 -0.18 0.30 16 24 N -0.33 -4.80 2.95 -58.49 -0.17 -4.97 16 25 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 26 H 0.12 1.66 6.52 -51.93 -0.34 1.32 16 27 H 0.04 0.55 8.05 -51.93 -0.42 0.13 16 28 H 0.07 0.98 5.83 -51.93 -0.30 0.67 16 29 H 0.00 -0.09 8.00 -51.93 -0.42 -0.51 16 30 H 0.04 0.93 6.24 -51.93 -0.32 0.60 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.10 1.57 7.32 -51.93 -0.38 1.19 16 33 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.18 2.03 8.06 -52.49 -0.42 1.60 16 35 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -29.17 325.48 -7.75 -36.92 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.25 Total: 0.90 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -3.41 Total: 0.89 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.03 Total: -57.95 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.17 -7.75 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152828574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.039 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds