Wall clock time and date at job start Tue Mar 31 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46608 * 116.38579 * 3 2 1 5 5 N 1.46901 * 109.46739 * 179.43579 * 4 3 2 6 6 C 1.46899 * 111.00071 * 287.98927 * 5 4 3 7 7 C 1.50701 * 109.47286 * 160.35912 * 6 5 4 8 8 H 1.07996 * 119.99755 * 4.65650 * 7 6 5 9 9 C 1.37879 * 119.99919 * 184.66013 * 7 6 5 10 10 N 1.31515 * 119.99807 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 119.99991 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47120 * 59.99685 * 11 9 7 13 13 H 1.48503 * 109.47200 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47245 * 299.99832 * 11 9 7 15 15 C 1.46898 * 110.99838 * 164.02992 * 5 4 3 16 16 C 1.50696 * 109.47314 * 293.95222 * 15 5 4 17 17 C 1.35456 * 126.41716 * 95.00361 * 16 15 5 18 18 N 1.33346 * 108.60808 * 179.97438 * 17 16 15 19 19 C 1.32306 * 109.13781 * 359.97438 * 18 17 16 20 20 C 1.40918 * 133.24654 * 179.97438 * 19 18 17 21 21 N 1.31136 * 119.70093 * 179.97438 * 20 19 18 22 22 C 1.33525 * 121.37033 * 359.97438 * 21 20 19 23 23 C 1.34994 * 121.25303 * 0.25100 * 22 21 20 24 24 N 1.36035 * 126.42420 * 275.00102 * 16 15 5 25 25 H 1.08997 * 109.47027 * 356.38256 * 3 2 1 26 26 H 1.09003 * 109.46803 * 236.37988 * 3 2 1 27 27 H 1.08993 * 109.47244 * 59.43460 * 4 3 2 28 28 H 1.08996 * 109.47301 * 299.43099 * 4 3 2 29 29 H 1.09002 * 109.46499 * 280.35570 * 6 5 4 30 30 H 1.08998 * 109.47146 * 40.35246 * 6 5 4 31 31 H 0.97000 * 119.99710 * 180.02562 * 10 9 7 32 32 H 1.09006 * 109.46733 * 173.95469 * 15 5 4 33 33 H 1.09004 * 109.47380 * 53.95723 * 15 5 4 34 34 H 1.08001 * 125.69920 * 359.97438 * 17 16 15 35 35 H 1.07993 * 120.14870 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.36859 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.13330 * 179.69191 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1177 0.6420 -1.2923 5 7 4.5866 0.6549 -1.2863 6 6 5.1005 1.6428 -0.3283 7 6 6.5314 1.3150 0.0127 8 1 7.0348 0.5043 -0.4930 9 6 7.1977 2.0499 0.9702 10 7 6.5847 3.0374 1.5856 11 14 8.9710 1.6431 1.3934 12 1 9.8148 1.7861 0.1798 13 1 9.4547 2.5727 2.4456 14 1 9.0532 0.2465 1.8916 15 6 5.1164 0.9030 -2.6337 16 6 4.7718 -0.2579 -3.5307 17 6 3.7023 -0.3456 -4.3573 18 7 3.7436 -1.5223 -4.9831 19 6 4.8117 -2.1908 -4.5798 20 6 5.3370 -3.4577 -4.9037 21 7 6.4426 -3.8685 -4.3305 22 6 7.0878 -3.1099 -3.4411 23 6 6.6241 -1.8909 -3.0930 24 7 5.4764 -1.4140 -3.6620 25 1 2.9719 -1.0248 0.0648 26 1 2.9711 0.5698 0.8558 27 1 2.7456 1.6641 -1.3619 28 1 2.7630 0.0671 -2.1477 29 1 5.0513 2.6377 -0.7709 30 1 4.4961 1.6183 0.5785 31 1 7.0536 3.5547 2.2590 32 1 6.1996 1.0142 -2.5834 33 1 4.6757 1.8157 -3.0351 34 1 2.9428 0.4112 -4.4877 35 1 4.8314 -4.0873 -5.6208 36 1 7.9956 -3.4806 -2.9884 37 1 7.1579 -1.2945 -2.3679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152828574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:55 Heat of formation + Delta-G solvation = 116.948946 kcal Electronic energy + Delta-G solvation = -21802.656875 eV Core-core repulsion = 18581.092139 eV Total energy + Delta-G solvation = -3221.564736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -44.06434 -39.59507 -38.78886 -37.45047 -35.24990 -34.69067 -32.81844 -31.62168 -30.96842 -28.78148 -26.91681 -25.32063 -24.81754 -23.94313 -22.45473 -21.64016 -19.05658 -18.64405 -18.39346 -18.27279 -17.29680 -16.73747 -16.50484 -16.17612 -16.03618 -15.55681 -15.46701 -15.16200 -14.77893 -14.31383 -14.12488 -13.92570 -13.70710 -13.65087 -13.45772 -13.14716 -12.97318 -12.60162 -12.56629 -12.49471 -12.36374 -12.06601 -11.56776 -11.30475 -11.18945 -10.93749 -10.50201 -9.94636 -9.15034 -8.94632 -8.11421 -6.18940 -0.39096 0.20230 1.47647 1.48911 1.50349 1.56465 1.68417 1.77707 1.80547 2.46391 2.60706 2.89361 3.10070 3.22921 3.34426 3.38011 3.60380 3.81335 4.05146 4.10278 4.19401 4.25919 4.35862 4.53396 4.58714 4.62879 4.76590 4.91985 5.00511 5.08309 5.26927 5.33591 5.37118 5.51203 5.73089 5.81417 6.12863 6.29603 6.53274 6.58148 6.62934 6.79865 6.95109 7.50146 8.98179 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.006449 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.697434 B = 4340.570295 C = 6265.958622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.242 3.758 3 C -0.015 4.015 4 C 0.059 3.941 5 N -0.531 5.531 6 C 0.202 3.798 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.009 3.991 10 N -0.932 5.932 11 Si 0.953 3.047 12 H -0.269 1.269 13 H -0.295 1.295 14 H -0.268 1.268 15 C 0.141 3.859 16 C -0.029 4.029 17 C 0.030 3.970 18 N -0.487 5.487 19 C 0.136 3.864 20 C 0.188 3.812 21 N -0.473 5.473 22 C 0.031 3.969 23 C 0.017 3.983 24 N -0.340 5.340 25 H 0.125 0.875 26 H 0.112 0.888 27 H 0.039 0.961 28 H 0.084 0.916 29 H -0.028 1.028 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.201 0.799 35 H 0.211 0.789 36 H 0.205 0.795 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 -8.880 -9.789 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.075 4.075 3 C -0.056 4.056 4 C -0.070 4.070 5 N -0.256 5.256 6 C 0.076 3.924 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.190 4.190 10 N -0.572 5.572 11 Si 0.779 3.221 12 H -0.194 1.194 13 H -0.221 1.221 14 H -0.193 1.193 15 C 0.012 3.988 16 C -0.147 4.147 17 C -0.124 4.124 18 N -0.209 5.209 19 C -0.107 4.107 20 C 0.005 3.995 21 N -0.184 5.184 22 C -0.107 4.107 23 C -0.107 4.107 24 N -0.013 5.013 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.058 0.942 28 H 0.102 0.898 29 H -0.010 1.010 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.218 0.782 35 H 0.228 0.772 36 H 0.222 0.778 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.848 -10.241 -10.085 14.398 hybrid contribution 1.219 2.253 1.232 2.843 sum 0.371 -7.987 -8.854 11.930 Atomic orbital electron populations 1.81193 1.14227 1.11045 1.10464 1.29442 0.95288 0.91255 0.91481 1.19286 0.79300 1.05874 1.01092 1.21956 0.88791 0.99489 0.96789 1.61975 1.05889 1.51815 1.05892 1.19553 0.95046 0.87428 0.90333 1.21375 0.97552 1.15491 1.20563 0.91614 1.25699 1.01915 0.95062 0.96298 1.70041 1.38683 1.21502 1.27014 0.85677 0.80477 0.78085 0.77821 1.19443 1.22073 1.19325 1.20269 1.01160 0.90972 0.86385 1.21388 0.97022 0.89963 1.06287 1.22800 0.98084 0.95966 0.95582 1.70508 1.17556 1.06277 1.26570 1.22437 0.94044 0.97564 0.96699 1.23195 0.90863 0.88581 0.96837 1.68223 1.07403 1.34171 1.08636 1.22617 1.01896 0.89589 0.96568 1.23015 0.87993 0.98801 1.00869 1.42732 1.17437 1.13736 1.27388 0.85736 0.86993 0.94240 0.89781 1.00992 0.95393 0.93011 0.90187 0.91501 0.78177 0.77216 0.77811 0.80267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.17 18.54 20.01 0.37 -15.80 16 2 C 0.24 6.84 15.43 89.44 1.38 8.22 16 3 C -0.02 -0.39 5.78 28.79 0.17 -0.22 16 4 C 0.06 1.63 4.78 86.30 0.41 2.04 16 5 N -0.53 -17.35 4.37 -905.38 -3.96 -21.30 16 6 C 0.20 8.55 4.59 85.56 0.39 8.94 16 7 C -0.51 -23.99 8.61 25.60 0.22 -23.77 16 8 H 0.07 2.94 7.66 -2.91 -0.02 2.92 16 9 C 0.01 0.43 5.46 84.66 0.46 0.89 16 10 N -0.93 -50.30 13.29 21.45 0.28 -50.02 16 11 Si 0.95 39.37 29.54 68.60 2.03 41.39 16 12 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 13 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 15 C 0.14 4.17 5.25 85.56 0.45 4.62 16 16 C -0.03 -0.79 5.84 41.26 0.24 -0.55 16 17 C 0.03 0.77 10.36 83.82 0.87 1.64 16 18 N -0.49 -13.79 11.30 -194.15 -2.19 -15.99 16 19 C 0.14 3.65 7.85 134.08 1.05 4.70 16 20 C 0.19 4.09 11.34 85.45 0.97 5.06 16 21 N -0.47 -10.53 10.42 -195.44 -2.04 -12.57 16 22 C 0.03 0.64 11.07 83.69 0.93 1.56 16 23 C 0.02 0.42 10.96 83.19 0.91 1.33 16 24 N -0.34 -9.25 2.95 -338.97 -1.00 -10.25 16 25 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.11 3.09 6.52 -2.39 -0.02 3.08 16 27 H 0.04 1.09 8.05 -2.39 -0.02 1.07 16 28 H 0.08 2.14 5.83 -2.39 -0.01 2.12 16 29 H -0.03 -1.29 8.00 -2.39 -0.02 -1.31 16 30 H 0.03 1.26 6.24 -2.39 -0.01 1.25 16 31 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.08 2.61 7.32 -2.38 -0.02 2.59 16 33 H 0.07 1.84 8.12 -2.38 -0.02 1.82 16 34 H 0.20 4.11 8.06 -2.91 -0.02 4.09 16 35 H 0.21 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.21 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.18 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -61.35 325.48 3.04 -58.31 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.10 Total: 11.77 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 8.45 Total: 14.46 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -8.53 Total: -125.93 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.39 kcal Total: -61.35 3.04 -58.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152828574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.255 kcal (2) G-P(sol) polarization free energy of solvation -61.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds