Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 120.00126 * 2 1 4 4 H 1.48495 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46523 * 299.99858 * 3 2 1 6 6 H 1.48498 * 109.46972 * 59.99370 * 3 2 1 7 7 C 1.40055 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.46379 * 119.99751 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00209 * 352.49241 * 9 7 2 11 11 N 1.34769 * 119.99533 * 172.49791 * 9 7 2 12 12 C 1.46506 * 120.00538 * 5.24422 * 11 9 7 13 13 C 1.53001 * 117.49451 * 115.61306 * 12 11 9 14 14 C 1.52992 * 117.50166 * 184.23580 * 12 11 9 15 15 C 1.46510 * 119.99774 * 185.25142 * 11 9 7 16 16 H 1.09003 * 109.24827 * 175.59458 * 15 11 9 17 17 C 1.52733 * 109.24910 * 295.01984 * 15 11 9 18 18 C 1.53329 * 108.38793 * 171.38280 * 17 15 11 19 19 C 1.52735 * 108.37887 * 290.13520 * 18 17 15 20 20 C 1.50635 * 110.58993 * 51.11806 * 19 18 17 21 21 C 1.38902 * 117.75181 * 162.54553 * 20 19 18 22 22 C 1.37934 * 120.54370 * 179.38429 * 21 20 19 23 23 C 1.38262 * 119.77197 * 0.05471 * 22 21 20 24 24 C 1.37936 * 119.77034 * 0.10945 * 23 22 21 25 25 C 1.37664 * 122.56248 * 342.19895 * 20 19 18 26 26 H 0.96992 * 119.99907 * 0.02562 * 1 2 3 27 27 H 1.09001 * 115.55716 * 329.93553 * 12 11 9 28 28 H 1.08992 * 117.50202 * 0.02562 * 13 12 11 29 29 H 1.09004 * 117.49653 * 214.98174 * 13 12 11 30 30 H 1.08999 * 117.49674 * 145.02222 * 14 12 11 31 31 H 1.09004 * 117.49955 * 0.02562 * 14 12 11 32 32 H 1.08993 * 109.68253 * 291.11157 * 17 15 11 33 33 H 1.09005 * 109.67743 * 51.66025 * 17 15 11 34 34 H 1.09000 * 109.68044 * 170.41781 * 18 17 15 35 35 H 1.08991 * 109.71685 * 49.87850 * 18 17 15 36 36 H 1.08997 * 109.25421 * 290.82402 * 19 18 17 37 37 H 1.09005 * 109.24891 * 171.40128 * 19 18 17 38 38 H 1.08002 * 119.73173 * 359.40915 * 21 20 19 39 39 H 1.08000 * 120.11607 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.11546 * 180.14235 * 23 22 21 41 41 H 1.08001 * 119.72363 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8820 2.3963 -1.2126 6 1 1.8819 2.3965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4806 0.0005 10 8 0.0660 -2.4850 0.1378 11 7 1.9404 -3.6427 -0.1513 12 6 3.4046 -3.6476 -0.2011 13 6 4.1472 -4.3685 0.9257 14 6 4.0977 -4.9839 -0.4742 15 6 1.1993 -4.9013 -0.2668 16 1 1.8994 -5.7140 -0.4605 17 6 0.4625 -5.1738 1.0429 18 6 -0.4726 -6.3705 0.8319 19 6 -1.6088 -5.9368 -0.0921 20 6 -1.0615 -5.2832 -1.3340 21 6 -1.9072 -5.1662 -2.4296 22 6 -1.4697 -4.5660 -3.5919 23 6 -0.1785 -4.0776 -3.6684 24 6 0.6639 -4.1959 -2.5826 25 6 0.2256 -4.8011 -1.4117 26 1 -0.4849 0.8400 -0.0004 27 1 3.8641 -2.7488 -0.6124 28 1 3.5465 -4.8395 1.7037 29 1 5.0955 -3.9441 1.2556 30 1 5.0133 -4.9643 -1.0653 31 1 3.4644 -5.8594 -0.6173 32 1 1.1824 -5.4044 1.8281 33 1 -0.1210 -4.2973 1.3251 34 1 -0.8809 -6.6908 1.7905 35 1 0.0789 -7.1920 0.3750 36 1 -2.2497 -5.2292 0.4340 37 1 -2.1957 -6.8108 -0.3747 38 1 -2.9159 -5.5478 -2.3709 39 1 -2.1333 -4.4783 -4.4395 40 1 0.1691 -3.6046 -4.5749 41 1 1.6725 -3.8145 -2.6433 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153718243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = 18.299044 kcal Electronic energy + Delta-G solvation = -23528.170922 eV Core-core repulsion = 20373.575998 eV Total energy + Delta-G solvation = -3154.594924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91153 -37.85306 -35.86098 -35.25172 -32.85665 -32.10241 -30.26670 -29.60832 -28.06041 -25.94498 -23.26411 -22.29422 -21.91198 -21.50486 -21.26815 -19.41588 -18.54764 -16.95911 -15.79804 -15.65534 -15.11138 -14.82258 -14.60726 -14.51018 -13.90418 -13.48597 -13.11275 -12.76864 -12.69477 -12.56435 -12.39489 -12.05824 -11.77579 -11.42792 -11.32688 -11.17803 -11.08463 -10.89231 -10.75320 -10.43482 -10.35544 -10.24851 -10.12194 -9.98873 -9.77643 -9.70050 -8.83520 -8.13245 -7.97842 -7.38903 -7.12922 -6.16822 -4.61158 2.02710 2.05687 3.12359 3.21155 3.24574 4.04273 4.27651 4.33697 4.49691 4.63810 5.16691 5.20780 5.33365 5.35352 5.47717 5.51998 5.53555 5.61929 5.65369 5.72953 5.74548 5.85889 6.00613 6.07999 6.14673 6.15471 6.27044 6.31848 6.34253 6.45237 6.48095 6.55020 6.62451 6.68847 6.76434 7.05742 7.09345 7.16328 7.34859 7.45969 7.61413 7.70348 8.15604 8.36199 9.04755 9.43760 10.59877 10.78726 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.007422 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.065123 B = 3771.827770 C = 4544.615202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.902 3.098 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.565 3.435 10 O -0.555 6.555 11 N -0.610 5.610 12 C 0.116 3.884 13 C -0.206 4.206 14 C -0.209 4.209 15 C 0.193 3.807 16 H 0.079 0.921 17 C -0.134 4.134 18 C -0.113 4.113 19 C -0.075 4.075 20 C -0.064 4.064 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.092 4.092 25 C -0.052 4.052 26 H 0.266 0.734 27 H 0.127 0.873 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 -10.402 -2.560 11.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.130 4.130 3 Si 0.727 3.273 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.088 0.912 9 C 0.370 3.630 10 O -0.436 6.436 11 N -0.346 5.346 12 C 0.009 3.991 13 C -0.246 4.246 14 C -0.247 4.247 15 C 0.089 3.911 16 H 0.097 0.903 17 C -0.172 4.172 18 C -0.151 4.151 19 C -0.112 4.112 20 C -0.065 4.065 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.110 4.110 25 C -0.053 4.053 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.805 -10.257 -2.483 10.706 hybrid contribution 0.581 0.978 -0.045 1.138 sum 2.386 -9.279 -2.528 9.909 Atomic orbital electron populations 1.70013 1.06925 1.27031 1.35502 1.25685 0.94556 1.00104 0.92700 0.86409 0.80585 0.82181 0.78168 1.18792 1.20279 1.20240 1.21007 0.93585 0.89241 1.54015 0.91217 1.18124 0.86852 0.81698 0.76278 1.90602 1.14285 1.85367 1.53336 1.47888 1.02536 1.06036 1.78091 1.21510 0.82495 0.95109 0.99974 1.23355 1.02811 1.06140 0.92247 1.23348 1.02847 0.98446 1.00067 1.19500 0.91490 0.88066 0.92083 0.90338 1.22035 0.98824 0.99455 0.96927 1.21496 0.96853 0.97898 0.98874 1.20407 0.97839 0.99165 0.93828 1.19430 0.93062 0.99137 0.94858 1.20939 0.98776 1.01555 0.93540 1.20853 0.96034 1.00028 0.97728 1.20917 0.94416 1.00809 0.98627 1.21046 1.00006 0.97418 0.92557 1.19746 0.94019 0.96843 0.94704 0.92281 0.85557 0.89328 0.89176 0.88929 0.88899 0.92745 0.88626 0.91997 0.92480 0.90621 0.91812 0.87132 0.87098 0.87022 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.60 11.86 55.55 0.66 -21.94 16 2 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 3 Si 0.90 20.03 29.56 -169.99 -5.02 15.00 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.81 8.80 -35.63 -0.31 -15.12 16 8 H 0.07 1.76 6.06 -52.49 -0.32 1.44 16 9 C 0.56 15.27 6.57 -12.99 -0.09 15.18 16 10 O -0.56 -16.86 12.35 5.20 0.06 -16.79 16 11 N -0.61 -13.26 1.95 -161.72 -0.32 -13.57 16 12 C 0.12 2.12 5.87 -67.93 -0.40 1.73 16 13 C -0.21 -3.20 10.38 -26.73 -0.28 -3.47 16 14 C -0.21 -3.02 9.82 -26.74 -0.26 -3.29 16 15 C 0.19 3.74 2.37 -69.25 -0.16 3.58 16 16 H 0.08 1.35 5.15 -51.93 -0.27 1.09 16 17 C -0.13 -2.52 5.32 -26.70 -0.14 -2.66 16 18 C -0.11 -1.73 5.98 -26.70 -0.16 -1.88 16 19 C -0.08 -1.22 5.67 -28.05 -0.16 -1.38 16 20 C -0.06 -1.22 5.74 -104.62 -0.60 -1.82 16 21 C -0.13 -2.29 9.61 -39.45 -0.38 -2.67 16 22 C -0.13 -2.23 10.05 -39.68 -0.40 -2.62 16 23 C -0.13 -2.40 10.05 -39.68 -0.40 -2.80 16 24 C -0.09 -1.88 8.81 -39.45 -0.35 -2.23 16 25 C -0.05 -1.06 4.12 -104.62 -0.43 -1.49 16 26 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 27 H 0.13 2.38 6.43 -51.93 -0.33 2.05 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.32 5.75 -51.93 -0.30 1.02 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 2.22 6.15 -51.93 -0.32 1.91 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 38 H 0.11 1.64 8.05 -52.49 -0.42 1.22 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.12 2.40 7.61 -52.49 -0.40 2.01 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -32.22 326.36 -10.03 -42.25 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.72 Total: 8.75 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -4.61 Total: -18.61 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.34 Total: -35.51 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.06 Total: -16.79 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.22 -10.03 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153718243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.552 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds