Wall clock time and date at job start Tue Mar 31 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 120.00126 * 2 1 4 4 H 1.48495 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46523 * 299.99858 * 3 2 1 6 6 H 1.48498 * 109.46972 * 59.99370 * 3 2 1 7 7 C 1.40055 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.46379 * 119.99751 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00209 * 352.49241 * 9 7 2 11 11 N 1.34769 * 119.99533 * 172.49791 * 9 7 2 12 12 C 1.46506 * 120.00538 * 5.24422 * 11 9 7 13 13 C 1.53001 * 117.49451 * 115.61306 * 12 11 9 14 14 C 1.52992 * 117.50166 * 184.23580 * 12 11 9 15 15 C 1.46510 * 119.99774 * 185.25142 * 11 9 7 16 16 H 1.09003 * 109.24827 * 175.59458 * 15 11 9 17 17 C 1.52733 * 109.24910 * 295.01984 * 15 11 9 18 18 C 1.53329 * 108.38793 * 171.38280 * 17 15 11 19 19 C 1.52735 * 108.37887 * 290.13520 * 18 17 15 20 20 C 1.50635 * 110.58993 * 51.11806 * 19 18 17 21 21 C 1.38902 * 117.75181 * 162.54553 * 20 19 18 22 22 C 1.37934 * 120.54370 * 179.38429 * 21 20 19 23 23 C 1.38262 * 119.77197 * 0.05471 * 22 21 20 24 24 C 1.37936 * 119.77034 * 0.10945 * 23 22 21 25 25 C 1.37664 * 122.56248 * 342.19895 * 20 19 18 26 26 H 0.96992 * 119.99907 * 0.02562 * 1 2 3 27 27 H 1.09001 * 115.55716 * 329.93553 * 12 11 9 28 28 H 1.08992 * 117.50202 * 0.02562 * 13 12 11 29 29 H 1.09004 * 117.49653 * 214.98174 * 13 12 11 30 30 H 1.08999 * 117.49674 * 145.02222 * 14 12 11 31 31 H 1.09004 * 117.49955 * 0.02562 * 14 12 11 32 32 H 1.08993 * 109.68253 * 291.11157 * 17 15 11 33 33 H 1.09005 * 109.67743 * 51.66025 * 17 15 11 34 34 H 1.09000 * 109.68044 * 170.41781 * 18 17 15 35 35 H 1.08991 * 109.71685 * 49.87850 * 18 17 15 36 36 H 1.08997 * 109.25421 * 290.82402 * 19 18 17 37 37 H 1.09005 * 109.24891 * 171.40128 * 19 18 17 38 38 H 1.08002 * 119.73173 * 359.40915 * 21 20 19 39 39 H 1.08000 * 120.11607 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.11546 * 180.14235 * 23 22 21 41 41 H 1.08001 * 119.72363 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8820 2.3963 -1.2126 6 1 1.8819 2.3965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4806 0.0005 10 8 0.0660 -2.4850 0.1378 11 7 1.9404 -3.6427 -0.1513 12 6 3.4046 -3.6476 -0.2011 13 6 4.1472 -4.3685 0.9257 14 6 4.0977 -4.9839 -0.4742 15 6 1.1993 -4.9013 -0.2668 16 1 1.8994 -5.7140 -0.4605 17 6 0.4625 -5.1738 1.0429 18 6 -0.4726 -6.3705 0.8319 19 6 -1.6088 -5.9368 -0.0921 20 6 -1.0615 -5.2832 -1.3340 21 6 -1.9072 -5.1662 -2.4296 22 6 -1.4697 -4.5660 -3.5919 23 6 -0.1785 -4.0776 -3.6684 24 6 0.6639 -4.1959 -2.5826 25 6 0.2256 -4.8011 -1.4117 26 1 -0.4849 0.8400 -0.0004 27 1 3.8641 -2.7488 -0.6124 28 1 3.5465 -4.8395 1.7037 29 1 5.0955 -3.9441 1.2556 30 1 5.0133 -4.9643 -1.0653 31 1 3.4644 -5.8594 -0.6173 32 1 1.1824 -5.4044 1.8281 33 1 -0.1210 -4.2973 1.3251 34 1 -0.8809 -6.6908 1.7905 35 1 0.0789 -7.1920 0.3750 36 1 -2.2497 -5.2292 0.4340 37 1 -2.1957 -6.8108 -0.3747 38 1 -2.9159 -5.5478 -2.3709 39 1 -2.1333 -4.4783 -4.4395 40 1 0.1691 -3.6046 -4.5749 41 1 1.6725 -3.8145 -2.6433 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153718243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:30 Heat of formation + Delta-G solvation = 1.135544 kcal Electronic energy + Delta-G solvation = -23528.915188 eV Core-core repulsion = 20373.575998 eV Total energy + Delta-G solvation = -3155.339190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.41321 -39.39594 -37.60505 -36.66129 -34.70897 -33.86995 -31.85475 -31.01635 -29.61245 -27.86246 -24.74217 -23.64912 -23.31617 -22.94344 -22.81076 -20.98531 -20.17580 -18.54545 -17.66983 -17.23539 -16.69655 -16.28482 -16.12667 -16.01149 -15.38955 -14.98678 -14.60861 -14.46770 -14.26671 -14.15672 -13.82672 -13.56900 -13.27218 -13.11559 -12.89011 -12.77869 -12.61734 -12.30008 -12.20365 -12.09818 -11.96414 -11.78332 -11.77937 -11.34826 -11.15536 -11.13144 -10.88449 -9.74288 -9.48634 -9.23647 -8.80760 -8.21282 -6.74656 0.58946 0.60423 1.36588 1.37479 1.53348 2.23140 2.52599 2.69758 3.00762 3.10247 3.67373 3.82157 3.88980 3.98613 4.03002 4.16354 4.18411 4.27283 4.29296 4.35331 4.39335 4.45593 4.61710 4.67980 4.82994 4.85662 4.99614 5.00830 5.03200 5.09277 5.15863 5.16892 5.27107 5.32986 5.38091 5.40241 5.53059 5.67307 5.71844 5.86852 5.90281 6.21077 6.27864 6.52268 6.95208 7.53877 8.57964 8.77629 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.007422 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.065123 B = 3771.827770 C = 4544.615202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.248 1.248 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.556 3.444 10 O -0.600 6.600 11 N -0.608 5.608 12 C 0.070 3.930 13 C -0.193 4.193 14 C -0.174 4.174 15 C 0.191 3.809 16 H 0.103 0.897 17 C -0.130 4.130 18 C -0.104 4.104 19 C -0.075 4.075 20 C -0.084 4.084 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.118 4.118 25 C -0.076 4.076 26 H 0.269 0.731 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 -11.881 -2.988 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.171 1.171 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.605 4.605 8 H 0.101 0.899 9 C 0.361 3.639 10 O -0.484 6.484 11 N -0.341 5.341 12 C -0.035 4.035 13 C -0.232 4.232 14 C -0.211 4.211 15 C 0.087 3.913 16 H 0.120 0.880 17 C -0.169 4.169 18 C -0.142 4.142 19 C -0.112 4.112 20 C -0.085 4.085 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.161 4.161 24 C -0.137 4.137 25 C -0.077 4.077 26 H 0.079 0.921 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.147 0.853 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.059 -11.783 -2.914 12.517 hybrid contribution 0.221 1.364 0.062 1.384 sum 3.280 -10.419 -2.852 11.289 Atomic orbital electron populations 1.70188 1.09170 1.28238 1.37440 1.26798 0.95367 1.04356 0.91567 0.85177 0.79635 0.76529 0.78270 1.17073 1.19681 1.19732 1.21502 0.94457 0.90250 1.54302 0.89924 1.18274 0.86473 0.83313 0.75800 1.90558 1.16113 1.86707 1.55054 1.47528 1.04110 1.05581 1.76923 1.21640 0.80815 0.97212 1.03844 1.23378 1.02703 1.04878 0.92261 1.23410 1.02783 0.95776 0.99175 1.19699 0.91820 0.87480 0.92276 0.87956 1.21921 0.99078 0.99035 0.96827 1.21482 0.95973 0.96694 1.00070 1.20463 0.98163 0.99776 0.92753 1.19875 0.92851 0.99311 0.96426 1.21380 0.99916 1.00981 0.93154 1.21268 0.95873 0.98932 0.98823 1.21229 0.95046 1.00983 0.98846 1.21118 0.99996 0.98786 0.93790 1.19979 0.95165 0.97709 0.94831 0.92113 0.86864 0.89902 0.87155 0.86123 0.88326 0.91883 0.93769 0.89798 0.90101 0.92662 0.88271 0.84194 0.83878 0.85324 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.61 11.86 21.84 0.26 -50.35 16 2 C 0.03 1.90 5.50 85.31 0.47 2.37 16 3 Si 0.98 41.95 29.56 68.60 2.03 43.98 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.57 -32.19 8.80 24.83 0.22 -31.97 16 8 H 0.08 4.28 6.06 -2.91 -0.02 4.26 16 9 C 0.56 31.54 6.57 86.36 0.57 32.10 16 10 O -0.60 -38.61 12.35 -4.31 -0.05 -38.66 16 11 N -0.61 -27.15 1.95 -783.79 -1.53 -28.68 16 12 C 0.07 2.57 5.87 44.99 0.26 2.83 16 13 C -0.19 -5.63 10.38 30.59 0.32 -5.31 16 14 C -0.17 -4.60 9.82 30.59 0.30 -4.30 16 15 C 0.19 7.46 2.37 44.13 0.10 7.57 16 16 H 0.10 3.41 5.15 -2.39 -0.01 3.40 16 17 C -0.13 -4.95 5.32 30.62 0.16 -4.78 16 18 C -0.10 -3.01 5.98 30.62 0.18 -2.83 16 19 C -0.07 -2.35 5.67 29.74 0.17 -2.18 16 20 C -0.08 -3.17 5.74 -19.86 -0.11 -3.28 16 21 C -0.14 -4.65 9.61 22.36 0.21 -4.43 16 22 C -0.13 -4.40 10.05 22.20 0.22 -4.18 16 23 C -0.14 -5.34 10.05 22.20 0.22 -5.11 16 24 C -0.12 -4.98 8.81 22.36 0.20 -4.79 16 25 C -0.08 -3.14 4.12 -19.86 -0.08 -3.22 16 26 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 27 H 0.11 4.35 6.43 -2.39 -0.02 4.33 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.10 2.52 5.75 -2.38 -0.01 2.51 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.04 2.16 6.15 -2.38 -0.01 2.14 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.10 2.38 8.13 -2.38 -0.02 2.36 16 38 H 0.14 3.82 8.05 -2.91 -0.02 3.79 16 39 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 40 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.10 4.43 7.61 -2.91 -0.02 4.41 16 Total: -1.00 -75.13 326.36 5.15 -69.98 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 1.03 Total: 35.25 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 3.42 Total: -31.52 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -1.27 Total: -79.03 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.05 Total: -38.66 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -75.13 5.15 -69.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153718243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.116 kcal (2) G-P(sol) polarization free energy of solvation -75.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds