Wall clock time and date at job start Tue Mar 31 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48503 * 109.47250 * 267.38563 * 3 2 1 5 5 H 1.48501 * 109.47077 * 27.38813 * 3 2 1 6 6 H 1.48504 * 109.47012 * 147.38554 * 3 2 1 7 7 C 1.40051 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99435 * 349.82173 * 7 2 1 9 9 C 1.46372 * 120.00128 * 169.81358 * 7 2 1 10 10 O 1.21687 * 120.00077 * 346.01385 * 9 7 2 11 11 N 1.34770 * 119.99898 * 166.01319 * 9 7 2 12 12 C 1.46501 * 120.00279 * 4.93556 * 11 9 7 13 13 C 1.53003 * 117.50212 * 192.84243 * 12 11 9 14 14 C 1.53003 * 117.50293 * 124.18065 * 12 11 9 15 15 C 1.46500 * 120.00015 * 184.93247 * 11 9 7 16 16 H 1.09003 * 109.25318 * 184.35810 * 15 11 9 17 17 C 1.52733 * 109.25432 * 64.88943 * 15 11 9 18 18 C 1.53324 * 108.38410 * 188.66039 * 17 15 11 19 19 C 1.52739 * 108.38377 * 69.88171 * 18 17 15 20 20 C 1.50625 * 110.58416 * 308.90728 * 19 18 17 21 21 C 1.38918 * 117.74529 * 197.48298 * 20 19 18 22 22 C 1.37940 * 120.54405 * 180.28827 * 21 20 19 23 23 C 1.38264 * 119.77054 * 0.09294 * 22 21 20 24 24 C 1.37932 * 119.76894 * 0.17685 * 23 22 21 25 25 C 1.37661 * 122.57106 * 17.71194 * 20 19 18 26 26 H 0.97006 * 120.00349 * 359.97438 * 1 2 3 27 27 H 1.09004 * 115.54902 * 338.51155 * 12 11 9 28 28 H 1.08998 * 117.49370 * 359.97438 * 13 12 11 29 29 H 1.08997 * 117.50027 * 145.01547 * 13 12 11 30 30 H 1.08993 * 117.49708 * 214.98266 * 14 12 11 31 31 H 1.08999 * 117.49214 * 0.02562 * 14 12 11 32 32 H 1.08991 * 109.68595 * 68.93326 * 17 15 11 33 33 H 1.09003 * 109.67985 * 308.38037 * 17 15 11 34 34 H 1.09000 * 109.68284 * 310.15790 * 18 17 15 35 35 H 1.09007 * 109.68088 * 189.60044 * 18 17 15 36 36 H 1.09003 * 109.25319 * 188.62450 * 19 18 17 37 37 H 1.09002 * 109.25443 * 69.19776 * 19 18 17 38 38 H 1.07996 * 119.72693 * 0.31561 * 21 20 19 39 39 H 1.08002 * 120.10994 * 180.11797 * 22 21 20 40 40 H 1.07997 * 120.11021 * 179.90030 * 23 22 21 41 41 H 1.08004 * 119.72430 * 179.65174 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5434 2.0146 -1.3986 5 1 1.4115 2.6680 0.6441 6 1 3.5095 1.4568 0.7546 7 6 2.0069 -1.2128 -0.0005 8 1 1.4796 -2.1408 0.1643 9 6 3.4534 -1.2227 -0.2247 10 8 4.0086 -0.2306 -0.6586 11 7 4.1702 -2.3306 0.0494 12 6 3.4897 -3.5584 0.4684 13 6 4.3516 -4.6803 1.0510 14 6 3.7504 -4.8250 -0.3493 15 6 5.6300 -2.3071 -0.0717 16 1 6.0222 -3.3070 0.1138 17 6 6.2056 -1.3407 0.9615 18 6 7.7020 -1.1645 0.6778 19 6 7.8566 -0.3757 -0.6209 20 6 7.0315 -0.9953 -1.7183 21 6 7.3317 -0.6460 -3.0289 22 6 6.6091 -1.1745 -4.0783 23 6 5.5761 -2.0578 -3.8245 24 6 5.2729 -2.4015 -2.5235 25 6 6.0051 -1.8772 -1.4658 26 1 -0.4851 0.8401 0.0004 27 1 2.4907 -3.4240 0.8834 28 1 5.4250 -4.5049 1.1221 29 1 3.9196 -5.2842 1.8490 30 1 2.9232 -5.5240 -0.4720 31 1 4.4286 -4.7448 -1.1988 32 1 6.0673 -1.7485 1.9627 33 1 5.7014 -0.3774 0.8840 34 1 8.1732 -2.1417 0.5721 35 1 8.1691 -0.6179 1.4971 36 1 8.9055 -0.3734 -0.9174 37 1 7.5272 0.6508 -0.4594 38 1 8.1378 0.0446 -3.2278 39 1 6.8497 -0.8996 -5.0946 40 1 5.0057 -2.4736 -4.6418 41 1 4.4622 -3.0871 -2.3258 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153718355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:33 Heat of formation + Delta-G solvation = 8.699358 kcal Electronic energy + Delta-G solvation = -23665.096300 eV Core-core repulsion = 20510.085102 eV Total energy + Delta-G solvation = -3155.011198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16642 -38.07512 -36.30551 -35.46557 -32.98166 -32.51523 -30.57620 -29.77734 -28.24612 -26.23987 -23.37308 -22.34879 -22.01662 -21.82481 -21.51757 -19.49759 -18.59310 -16.99606 -16.09745 -16.00870 -15.27233 -14.94588 -14.77963 -14.68233 -13.89133 -13.72514 -13.32712 -13.07771 -12.94257 -12.61949 -12.47209 -12.18506 -12.00455 -11.85182 -11.46857 -11.35675 -11.09101 -10.96462 -10.93728 -10.73690 -10.57339 -10.24140 -10.13665 -10.04499 -9.88614 -9.41281 -9.00118 -8.37141 -8.16136 -7.59750 -7.42889 -6.61351 -4.81114 1.87864 1.90686 3.44674 3.49296 3.72624 3.97209 4.10152 4.31086 4.39554 4.54237 5.01669 5.05818 5.20283 5.25899 5.34299 5.37253 5.39450 5.47458 5.48073 5.55285 5.62355 5.67651 5.84859 5.93948 5.97186 6.01805 6.14000 6.18047 6.22729 6.30690 6.36122 6.40313 6.47642 6.56295 6.61446 6.81326 6.95304 7.00489 7.10828 7.18438 7.52432 7.64868 7.89718 8.31989 8.72325 9.14759 10.07869 10.39773 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.008340 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.150712 B = 3356.488494 C = 3966.202463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.104 3.896 3 Si 0.962 3.038 4 H -0.279 1.279 5 H -0.324 1.324 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.088 0.912 9 C 0.558 3.442 10 O -0.595 6.595 11 N -0.600 5.600 12 C 0.113 3.887 13 C -0.206 4.206 14 C -0.211 4.211 15 C 0.192 3.808 16 H 0.083 0.917 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.077 4.077 20 C -0.066 4.066 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.129 4.129 24 C -0.098 4.098 25 C -0.051 4.051 26 H 0.281 0.719 27 H 0.138 0.862 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.444 -6.310 -0.560 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.114 4.114 3 Si 0.795 3.205 4 H -0.205 1.205 5 H -0.255 1.255 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.106 0.894 9 C 0.368 3.632 10 O -0.485 6.485 11 N -0.331 5.331 12 C 0.007 3.993 13 C -0.244 4.244 14 C -0.250 4.250 15 C 0.088 3.912 16 H 0.101 0.899 17 C -0.171 4.171 18 C -0.151 4.151 19 C -0.114 4.114 20 C -0.067 4.067 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.116 4.116 25 C -0.052 4.052 26 H 0.091 0.909 27 H 0.156 0.844 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.515 -5.742 -0.781 13.792 hybrid contribution 0.056 0.545 -0.183 0.578 sum 12.571 -5.197 -0.964 13.637 Atomic orbital electron populations 1.69564 1.07971 1.29882 1.38436 1.25727 0.94654 1.01931 0.89108 0.85292 0.78087 0.77704 0.79427 1.20524 1.25505 1.18745 1.20788 0.89439 0.95796 1.50646 0.89391 1.18211 0.87899 0.80177 0.76936 1.90258 1.72544 1.33382 1.52295 1.47339 1.03370 1.11018 1.71376 1.21643 0.97552 0.80288 0.99867 1.23376 0.99809 1.04179 0.97007 1.23454 1.03797 1.03273 0.94477 1.19544 0.82393 0.98196 0.91038 0.89920 1.21971 0.94932 1.02257 0.97934 1.21495 0.96759 0.99940 0.96920 1.20423 0.98041 0.99660 0.93246 1.19437 0.96648 0.96461 0.94105 1.20963 1.00615 1.00718 0.92390 1.20883 0.96923 0.98496 0.98315 1.20942 0.97957 0.99192 0.96600 1.21129 0.98399 0.99876 0.92198 1.19716 0.94336 0.96008 0.95182 0.90908 0.84444 0.88978 0.88653 0.88772 0.89176 0.92016 0.89382 0.92196 0.91728 0.91587 0.90703 0.87018 0.86961 0.86874 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.48 13.92 55.55 0.77 -22.71 16 2 C 0.10 2.93 5.52 -17.37 -0.10 2.83 16 3 Si 0.96 25.41 25.93 -169.99 -4.41 21.00 16 4 H -0.28 -7.69 7.11 56.52 0.40 -7.29 16 5 H -0.32 -8.18 7.11 56.52 0.40 -7.78 16 6 H -0.26 -7.14 6.60 56.52 0.37 -6.77 16 7 C -0.53 -14.62 9.28 -35.63 -0.33 -14.95 16 8 H 0.09 2.41 6.26 -52.49 -0.33 2.08 16 9 C 0.56 14.25 6.22 -12.99 -0.08 14.17 16 10 O -0.59 -16.43 9.79 5.20 0.05 -16.38 16 11 N -0.60 -12.43 1.96 -161.73 -0.32 -12.74 16 12 C 0.11 2.01 6.06 -67.93 -0.41 1.60 16 13 C -0.21 -2.85 9.76 -26.69 -0.26 -3.11 16 14 C -0.21 -3.12 9.94 -26.69 -0.27 -3.39 16 15 C 0.19 3.50 2.19 -69.25 -0.15 3.35 16 16 H 0.08 1.33 5.39 -51.93 -0.28 1.05 16 17 C -0.13 -2.32 5.33 -26.70 -0.14 -2.46 16 18 C -0.11 -1.59 5.98 -26.70 -0.16 -1.75 16 19 C -0.08 -1.15 5.67 -28.05 -0.16 -1.31 16 20 C -0.07 -1.17 5.74 -104.62 -0.60 -1.77 16 21 C -0.13 -2.11 9.61 -39.44 -0.38 -2.49 16 22 C -0.13 -2.07 10.05 -39.68 -0.40 -2.47 16 23 C -0.13 -2.24 10.05 -39.68 -0.40 -2.64 16 24 C -0.10 -1.88 8.75 -39.44 -0.35 -2.22 16 25 C -0.05 -0.98 3.88 -104.62 -0.41 -1.38 16 26 H 0.28 7.37 8.29 -40.82 -0.34 7.03 16 27 H 0.14 2.62 6.17 -51.93 -0.32 2.30 16 28 H 0.09 1.23 6.08 -51.93 -0.32 0.91 16 29 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.36 6.77 -51.93 -0.35 1.01 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.90 6.49 -51.93 -0.34 1.56 16 34 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.11 1.53 8.05 -52.49 -0.42 1.11 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.12 2.31 5.94 -52.48 -0.31 2.00 16 LS Contribution 318.91 15.07 4.81 4.81 Total: -1.00 -31.10 318.91 -9.31 -40.41 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.63 Total: 3.60 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -4.58 Total: -18.00 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.46 Total: -35.45 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.05 Total: -16.38 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.41 Total: 21.00 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.10 -9.31 -40.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153718355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.112 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds