Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48503 * 109.47250 * 267.38563 * 3 2 1 5 5 H 1.48501 * 109.47077 * 27.38813 * 3 2 1 6 6 H 1.48504 * 109.47012 * 147.38554 * 3 2 1 7 7 C 1.40051 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99435 * 349.82173 * 7 2 1 9 9 C 1.46372 * 120.00128 * 169.81358 * 7 2 1 10 10 O 1.21687 * 120.00077 * 346.01385 * 9 7 2 11 11 N 1.34770 * 119.99898 * 166.01319 * 9 7 2 12 12 C 1.46501 * 120.00279 * 4.93556 * 11 9 7 13 13 C 1.53003 * 117.50212 * 192.84243 * 12 11 9 14 14 C 1.53003 * 117.50293 * 124.18065 * 12 11 9 15 15 C 1.46500 * 120.00015 * 184.93247 * 11 9 7 16 16 H 1.09003 * 109.25318 * 184.35810 * 15 11 9 17 17 C 1.52733 * 109.25432 * 64.88943 * 15 11 9 18 18 C 1.53324 * 108.38410 * 188.66039 * 17 15 11 19 19 C 1.52739 * 108.38377 * 69.88171 * 18 17 15 20 20 C 1.50625 * 110.58416 * 308.90728 * 19 18 17 21 21 C 1.38918 * 117.74529 * 197.48298 * 20 19 18 22 22 C 1.37940 * 120.54405 * 180.28827 * 21 20 19 23 23 C 1.38264 * 119.77054 * 0.09294 * 22 21 20 24 24 C 1.37932 * 119.76894 * 0.17685 * 23 22 21 25 25 C 1.37661 * 122.57106 * 17.71194 * 20 19 18 26 26 H 0.97006 * 120.00349 * 359.97438 * 1 2 3 27 27 H 1.09004 * 115.54902 * 338.51155 * 12 11 9 28 28 H 1.08998 * 117.49370 * 359.97438 * 13 12 11 29 29 H 1.08997 * 117.50027 * 145.01547 * 13 12 11 30 30 H 1.08993 * 117.49708 * 214.98266 * 14 12 11 31 31 H 1.08999 * 117.49214 * 0.02562 * 14 12 11 32 32 H 1.08991 * 109.68595 * 68.93326 * 17 15 11 33 33 H 1.09003 * 109.67985 * 308.38037 * 17 15 11 34 34 H 1.09000 * 109.68284 * 310.15790 * 18 17 15 35 35 H 1.09007 * 109.68088 * 189.60044 * 18 17 15 36 36 H 1.09003 * 109.25319 * 188.62450 * 19 18 17 37 37 H 1.09002 * 109.25443 * 69.19776 * 19 18 17 38 38 H 1.07996 * 119.72693 * 0.31561 * 21 20 19 39 39 H 1.08002 * 120.10994 * 180.11797 * 22 21 20 40 40 H 1.07997 * 120.11021 * 179.90030 * 23 22 21 41 41 H 1.08004 * 119.72430 * 179.65174 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5434 2.0146 -1.3986 5 1 1.4115 2.6680 0.6441 6 1 3.5095 1.4568 0.7546 7 6 2.0069 -1.2128 -0.0005 8 1 1.4796 -2.1408 0.1643 9 6 3.4534 -1.2227 -0.2247 10 8 4.0086 -0.2306 -0.6586 11 7 4.1702 -2.3306 0.0494 12 6 3.4897 -3.5584 0.4684 13 6 4.3516 -4.6803 1.0510 14 6 3.7504 -4.8250 -0.3493 15 6 5.6300 -2.3071 -0.0717 16 1 6.0222 -3.3070 0.1138 17 6 6.2056 -1.3407 0.9615 18 6 7.7020 -1.1645 0.6778 19 6 7.8566 -0.3757 -0.6209 20 6 7.0315 -0.9953 -1.7183 21 6 7.3317 -0.6460 -3.0289 22 6 6.6091 -1.1745 -4.0783 23 6 5.5761 -2.0578 -3.8245 24 6 5.2729 -2.4015 -2.5235 25 6 6.0051 -1.8772 -1.4658 26 1 -0.4851 0.8401 0.0004 27 1 2.4907 -3.4240 0.8834 28 1 5.4250 -4.5049 1.1221 29 1 3.9196 -5.2842 1.8490 30 1 2.9232 -5.5240 -0.4720 31 1 4.4286 -4.7448 -1.1988 32 1 6.0673 -1.7485 1.9627 33 1 5.7014 -0.3774 0.8840 34 1 8.1732 -2.1417 0.5721 35 1 8.1691 -0.6179 1.4971 36 1 8.9055 -0.3734 -0.9174 37 1 7.5272 0.6508 -0.4594 38 1 8.1378 0.0446 -3.2278 39 1 6.8497 -0.8996 -5.0946 40 1 5.0057 -2.4736 -4.6418 41 1 4.4622 -3.0871 -2.3258 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153718355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -7.805739 kcal Electronic energy + Delta-G solvation = -23665.812014 eV Core-core repulsion = 20510.085102 eV Total energy + Delta-G solvation = -3155.726913 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60766 -39.58348 -37.97863 -36.75079 -34.98691 -34.09408 -32.07819 -31.06387 -29.73463 -28.11573 -24.75298 -23.62140 -23.31177 -23.20387 -23.00146 -20.98131 -20.20049 -18.58916 -18.00207 -17.47108 -16.74700 -16.67159 -16.20863 -16.05300 -15.32879 -15.15855 -14.86956 -14.64023 -14.36360 -14.24864 -14.14958 -13.81519 -13.47233 -13.31497 -13.06490 -12.83546 -12.72488 -12.52297 -12.31314 -12.15929 -11.94650 -11.85996 -11.53889 -11.41075 -11.23815 -11.19927 -11.15099 -10.03029 -9.52367 -9.26154 -9.01923 -8.78147 -6.95963 0.55265 0.57025 1.30542 1.33870 1.58087 2.11041 2.28531 2.55415 2.96101 3.02397 3.39245 3.77695 3.80928 3.93611 3.99156 4.12430 4.15303 4.17467 4.23973 4.28789 4.35878 4.41108 4.58159 4.65764 4.78783 4.82317 4.89334 4.97708 4.98975 5.05418 5.10778 5.13622 5.23343 5.26532 5.28324 5.35197 5.45457 5.65304 5.69283 5.73963 5.82763 6.05522 6.23702 6.30877 6.65768 7.20550 8.09100 8.28630 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.008340 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.150712 B = 3356.488494 C = 3966.202463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.072 3.928 3 Si 1.008 2.992 4 H -0.298 1.298 5 H -0.305 1.305 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.562 3.438 10 O -0.619 6.619 11 N -0.595 5.595 12 C 0.066 3.934 13 C -0.169 4.169 14 C -0.197 4.197 15 C 0.190 3.810 16 H 0.108 0.892 17 C -0.131 4.131 18 C -0.105 4.105 19 C -0.077 4.077 20 C -0.083 4.083 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.143 4.143 24 C -0.123 4.123 25 C -0.074 4.074 26 H 0.289 0.711 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.128 0.872 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.046 -7.293 -0.467 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.143 4.143 3 Si 0.842 3.158 4 H -0.226 1.226 5 H -0.235 1.235 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.097 0.903 9 C 0.369 3.631 10 O -0.511 6.511 11 N -0.324 5.324 12 C -0.039 4.039 13 C -0.206 4.206 14 C -0.236 4.236 15 C 0.087 3.913 16 H 0.126 0.874 17 C -0.170 4.170 18 C -0.142 4.142 19 C -0.114 4.114 20 C -0.084 4.084 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.161 4.161 24 C -0.142 4.142 25 C -0.075 4.075 26 H 0.099 0.901 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.146 0.854 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.113 -6.765 -0.666 16.571 hybrid contribution -0.709 0.759 -0.259 1.071 sum 14.403 -6.006 -0.925 15.633 Atomic orbital electron populations 1.69577 1.08332 1.30741 1.39904 1.26178 0.95156 1.03553 0.89410 0.84634 0.76781 0.76570 0.77861 1.22575 1.23539 1.20627 1.21033 0.91020 0.95446 1.51160 0.90316 1.17981 0.87490 0.81196 0.76420 1.90222 1.72929 1.34801 1.53104 1.47099 1.04617 1.10619 1.70065 1.21713 0.97904 0.80537 1.03721 1.23461 0.99852 1.00412 0.96915 1.23462 1.04168 1.00806 0.95135 1.19788 0.80470 0.99713 0.91315 0.87433 1.21922 0.97178 0.99574 0.98316 1.21490 0.94138 1.01410 0.97198 1.20494 0.99396 0.98491 0.93004 1.19869 0.96710 0.96085 0.95692 1.21389 1.01183 1.00683 0.91970 1.21282 0.96050 0.97511 0.99969 1.21237 0.98713 0.99673 0.96446 1.21205 0.98773 1.00781 0.93397 1.19901 0.95259 0.97101 0.95256 0.90119 0.86657 0.87757 0.86142 0.87275 0.89381 0.90970 0.94017 0.89915 0.89540 0.88248 0.92340 0.84146 0.83945 0.85380 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.48 13.92 21.84 0.30 -49.17 16 2 C 0.07 4.18 5.52 85.31 0.47 4.65 16 3 Si 1.01 53.91 25.93 68.60 1.78 55.69 16 4 H -0.30 -16.71 7.11 99.48 0.71 -16.00 16 5 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.28 -15.62 6.60 99.48 0.66 -14.96 16 7 C -0.55 -31.45 9.28 24.83 0.23 -31.22 16 8 H 0.08 4.53 6.26 -2.91 -0.02 4.51 16 9 C 0.56 29.59 6.22 86.36 0.54 30.12 16 10 O -0.62 -35.17 9.79 -4.31 -0.04 -35.21 16 11 N -0.59 -24.87 1.96 -783.80 -1.54 -26.40 16 12 C 0.07 2.35 6.06 44.99 0.27 2.63 16 13 C -0.17 -4.22 9.76 30.62 0.30 -3.92 16 14 C -0.20 -5.53 9.94 30.62 0.30 -5.22 16 15 C 0.19 6.75 2.19 44.13 0.10 6.84 16 16 H 0.11 3.20 5.39 -2.39 -0.01 3.19 16 17 C -0.13 -4.47 5.33 30.61 0.16 -4.31 16 18 C -0.10 -2.64 5.98 30.62 0.18 -2.45 16 19 C -0.08 -2.13 5.67 29.74 0.17 -1.96 16 20 C -0.08 -2.81 5.74 -19.86 -0.11 -2.92 16 21 C -0.13 -4.11 9.61 22.36 0.21 -3.89 16 22 C -0.13 -3.96 10.05 22.21 0.22 -3.73 16 23 C -0.14 -4.87 10.05 22.20 0.22 -4.64 16 24 C -0.12 -4.74 8.75 22.36 0.20 -4.54 16 25 C -0.07 -2.78 3.88 -19.86 -0.08 -2.86 16 26 H 0.29 15.38 8.29 -92.70 -0.77 14.61 16 27 H 0.12 4.56 6.17 -2.38 -0.01 4.55 16 28 H 0.10 2.39 6.08 -2.39 -0.01 2.37 16 29 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.09 2.55 6.77 -2.39 -0.02 2.53 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.04 1.82 6.49 -2.39 -0.02 1.80 16 34 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.10 2.06 8.13 -2.39 -0.02 2.04 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.14 3.37 8.05 -2.91 -0.02 3.35 16 39 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 41 H 0.11 4.19 5.94 -2.91 -0.02 4.17 16 Total: -1.00 -69.85 318.91 4.88 -64.97 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.99 Total: 17.56 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 3.39 Total: -27.42 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.23 Total: -75.58 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.04 Total: -35.21 kcal Atomic # 14 Polarization: 53.91 SS G_CDS: 1.78 Total: 55.69 kcal Total: -69.85 4.88 -64.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153718355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.161 kcal (2) G-P(sol) polarization free energy of solvation -69.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds