Wall clock time and date at job start Tue Mar 31 2020 05:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99813 * 2 1 4 4 H 1.48505 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47396 * 300.00527 * 3 2 1 6 6 H 1.48499 * 109.47183 * 60.00824 * 3 2 1 7 7 C 1.38813 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99776 * 201.69234 * 7 2 1 9 9 N 1.36931 * 120.00086 * 21.68938 * 7 2 1 10 10 C 1.46497 * 120.00296 * 36.73584 * 9 7 2 11 11 C 1.50699 * 109.47355 * 89.99678 * 10 9 7 12 12 N 1.30497 * 125.65429 * 270.18050 * 11 10 9 13 13 C 1.34127 * 109.25978 * 180.28793 * 12 11 10 14 14 C 1.34672 * 108.01892 * 359.72986 * 13 12 11 15 15 N 1.35045 * 125.64558 * 90.00102 * 11 10 9 16 16 C 1.46500 * 126.40349 * 359.97438 * 15 11 10 17 17 F 1.39895 * 109.47105 * 149.70919 * 16 15 11 18 18 F 1.39907 * 109.46501 * 29.71365 * 16 15 11 19 19 C 1.46500 * 119.99858 * 216.73207 * 9 7 2 20 20 C 1.54270 * 110.03285 * 61.86889 * 19 9 7 21 21 C 1.54958 * 104.16089 * 217.13367 * 20 19 9 22 22 C 1.54888 * 102.77917 * 37.88897 * 21 20 19 23 23 C 1.53872 * 110.03712 * 304.64870 * 19 9 7 24 24 H 0.96993 * 120.00201 * 354.91724 * 1 2 3 25 25 H 1.08997 * 109.47015 * 329.99811 * 10 9 7 26 26 H 1.09000 * 109.47290 * 210.00300 * 10 9 7 27 27 H 1.07996 * 125.99605 * 179.72293 * 13 12 11 28 28 H 1.08000 * 126.59374 * 179.97438 * 14 13 12 29 29 H 1.09000 * 109.47318 * 269.71586 * 16 15 11 30 30 H 1.09011 * 110.01654 * 183.25547 * 19 9 7 31 31 H 1.09004 * 110.48559 * 335.78522 * 20 19 9 32 32 H 1.08998 * 110.48537 * 98.42343 * 20 19 9 33 33 H 1.09000 * 110.72135 * 279.57339 * 21 20 19 34 34 H 1.09005 * 110.92394 * 156.29510 * 21 20 19 35 35 H 1.09001 * 110.48677 * 203.40759 * 22 21 20 36 36 H 1.09003 * 110.60436 * 80.81188 * 22 21 20 37 37 H 1.08994 * 110.03451 * 238.56764 * 23 19 9 38 38 H 1.09003 * 110.02942 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0329 -1.2354 0.3452 9 7 1.3983 -2.3458 -0.4393 10 6 0.4645 -2.2907 -1.5667 11 6 1.2186 -2.5009 -2.8544 12 7 1.7589 -1.5615 -3.5815 13 6 2.3404 -2.1136 -4.6567 14 6 2.1584 -3.4463 -4.5905 15 7 1.4501 -3.6929 -3.4453 16 6 1.0184 -5.0045 -2.9557 17 9 0.8033 -5.8599 -4.0415 18 9 -0.1698 -4.8635 -2.2306 19 6 1.6776 -3.6246 0.2187 20 6 1.2397 -3.5652 1.6967 21 6 2.3232 -4.3809 2.4462 22 6 3.6224 -3.9947 1.6967 23 6 3.1918 -3.8981 0.2184 24 1 -0.4850 0.8367 0.0744 25 1 -0.0240 -1.3166 -1.5866 26 1 -0.2874 -3.0719 -1.4543 27 1 2.8628 -1.5826 -5.4386 28 1 2.5045 -4.1796 -5.3039 29 1 1.7904 -5.4235 -2.3103 30 1 1.1525 -4.4306 -0.2941 31 1 1.2266 -2.5339 2.0495 32 1 0.2595 -4.0249 1.8230 33 1 2.1301 -5.4501 2.3589 34 1 2.3788 -4.0842 3.4936 35 1 4.3802 -4.7679 1.8234 36 1 3.9969 -3.0334 2.0485 37 1 3.4016 -4.8371 -0.2937 38 1 3.7189 -3.0795 -0.2717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156646587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:01 Heat of formation + Delta-G solvation = -9.787557 kcal Electronic energy + Delta-G solvation = -24199.937871 eV Core-core repulsion = 20522.188241 eV Total energy + Delta-G solvation = -3677.749630 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.27800 -47.39431 -41.39845 -37.79502 -34.40055 -32.96036 -31.23442 -29.53167 -27.95396 -26.90136 -26.05482 -25.28991 -22.50074 -20.97846 -20.09252 -19.94392 -19.19281 -18.04946 -17.77661 -17.11890 -16.17274 -15.48232 -14.87740 -14.70315 -14.35448 -14.19330 -14.09850 -13.73078 -13.70909 -13.27236 -13.14959 -12.85650 -12.66403 -12.57707 -12.08312 -11.20992 -11.04161 -10.90971 -10.69219 -10.51616 -10.36151 -10.31544 -10.13472 -10.01784 -9.90086 -9.59549 -9.47794 -9.28596 -8.46627 -7.88008 -6.64860 -5.83368 -3.35483 2.33675 2.53625 3.42433 3.52802 3.54209 3.61123 3.76619 4.26147 4.50181 4.57994 5.06893 5.21641 5.26819 5.33064 5.35423 5.54701 5.69263 5.83992 5.98448 6.00181 6.16610 6.21119 6.34624 6.42205 6.49818 6.51617 6.57611 6.68352 6.76049 6.86622 7.08054 7.15574 7.31037 7.43636 7.63489 7.87933 8.49553 8.78359 9.13077 9.78137 10.31270 11.22062 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.008748 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.618977 B = 3199.939708 C = 4448.203755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.026 3.974 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.293 1.293 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.561 5.561 10 C 0.198 3.802 11 C 0.254 3.746 12 N -0.477 5.477 13 C -0.018 4.018 14 C -0.082 4.082 15 N -0.522 5.522 16 C 0.487 3.513 17 F -0.190 7.190 18 F -0.173 7.173 19 C 0.167 3.833 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.136 4.136 24 H 0.257 0.743 25 H 0.130 0.870 26 H 0.060 0.940 27 H 0.164 0.836 28 H 0.168 0.832 29 H 0.143 0.857 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -11.387 -3.224 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.175 4.175 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.220 1.220 7 C -0.383 4.383 8 H 0.080 0.920 9 N -0.279 5.279 10 C 0.068 3.932 11 C -0.010 4.010 12 N -0.194 5.194 13 C -0.165 4.165 14 C -0.211 4.211 15 N -0.219 5.219 16 C 0.350 3.650 17 F -0.172 7.172 18 F -0.154 7.154 19 C 0.060 3.940 20 C -0.168 4.168 21 C -0.162 4.162 22 C -0.154 4.154 23 C -0.176 4.176 24 H 0.067 0.933 25 H 0.147 0.853 26 H 0.078 0.922 27 H 0.182 0.818 28 H 0.185 0.815 29 H 0.160 0.840 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.796 -10.541 -3.071 11.330 hybrid contribution 0.555 -0.157 -0.513 0.772 sum 3.351 -10.698 -3.584 11.770 Atomic orbital electron populations 1.69821 1.05660 1.26186 1.51235 1.25089 0.94960 0.98655 0.98789 0.86283 0.79746 0.83874 0.77096 1.20265 1.21144 1.21995 1.18827 0.94584 0.84877 1.39990 0.92041 1.43868 1.51455 1.03265 1.29323 1.20094 0.89600 1.05657 0.77812 1.26206 0.99546 0.77190 0.98085 1.70485 1.13754 1.30534 1.04609 1.22353 1.04308 0.90951 0.98852 1.22376 1.07085 0.99073 0.92523 1.46951 1.45391 1.07499 1.22023 1.21379 0.84564 0.78724 0.80304 1.93064 1.95716 1.70228 1.58142 1.93068 1.50183 1.95237 1.76962 1.21145 0.92409 0.88057 0.92409 1.22783 0.96135 1.01453 0.96411 1.22450 0.96266 0.98859 0.98601 1.22229 0.96684 1.00450 0.95994 1.22606 0.99111 0.99874 0.95962 0.93273 0.85318 0.92177 0.81844 0.81467 0.84032 0.93898 0.89345 0.93389 0.92900 0.92655 0.93389 0.91750 0.94344 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 11.42 55.49 0.63 -23.93 16 2 C 0.03 0.69 4.95 -17.43 -0.09 0.61 16 3 Si 0.90 21.99 29.61 -169.99 -5.03 16.96 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.25 -6.53 7.78 -15.06 -0.12 -6.65 16 8 H 0.06 1.63 6.97 -52.48 -0.37 1.26 16 9 N -0.56 -12.89 2.37 -165.75 -0.39 -13.28 16 10 C 0.20 4.53 5.46 -5.20 -0.03 4.51 16 11 C 0.25 5.44 7.39 -155.42 -1.15 4.30 16 12 N -0.48 -10.82 11.25 -10.82 -0.12 -10.94 16 13 C -0.02 -0.33 11.87 -17.81 -0.21 -0.54 16 14 C -0.08 -1.32 11.16 -16.56 -0.18 -1.51 16 15 N -0.52 -9.14 3.14 -119.64 -0.38 -9.51 16 16 C 0.49 6.92 5.94 59.85 0.36 7.27 16 17 F -0.19 -2.53 17.04 2.25 0.04 -2.49 16 18 F -0.17 -2.72 13.45 2.25 0.03 -2.69 16 19 C 0.17 3.21 3.41 -66.81 -0.23 2.98 16 20 C -0.13 -2.41 6.43 -25.03 -0.16 -2.57 16 21 C -0.12 -1.91 6.91 -24.70 -0.17 -2.08 16 22 C -0.12 -1.84 6.83 -25.07 -0.17 -2.01 16 23 C -0.14 -2.39 6.14 -25.61 -0.16 -2.55 16 24 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 25 H 0.13 3.44 5.46 -51.93 -0.28 3.16 16 26 H 0.06 1.29 5.39 -51.93 -0.28 1.01 16 27 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 28 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.14 1.63 7.99 -51.93 -0.41 1.21 16 30 H 0.04 0.76 6.06 -51.92 -0.31 0.45 16 31 H 0.09 1.97 7.20 -51.93 -0.37 1.59 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.51 6.75 -51.93 -0.35 1.16 16 LS Contribution 312.98 15.07 4.72 4.72 Total: -1.00 -29.20 312.98 -7.71 -36.92 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.90 Total: 2.50 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.31 Total: 1.76 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.26 Total: -57.66 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.07 Total: -5.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.20 -7.71 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156646587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.128 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds