Wall clock time and date at job start Tue Mar 31 2020 05:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99813 * 2 1 4 4 H 1.48505 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47396 * 300.00527 * 3 2 1 6 6 H 1.48499 * 109.47183 * 60.00824 * 3 2 1 7 7 C 1.38813 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99776 * 201.69234 * 7 2 1 9 9 N 1.36931 * 120.00086 * 21.68938 * 7 2 1 10 10 C 1.46497 * 120.00296 * 36.73584 * 9 7 2 11 11 C 1.50699 * 109.47355 * 89.99678 * 10 9 7 12 12 N 1.30497 * 125.65429 * 270.18050 * 11 10 9 13 13 C 1.34127 * 109.25978 * 180.28793 * 12 11 10 14 14 C 1.34672 * 108.01892 * 359.72986 * 13 12 11 15 15 N 1.35045 * 125.64558 * 90.00102 * 11 10 9 16 16 C 1.46500 * 126.40349 * 359.97438 * 15 11 10 17 17 F 1.39895 * 109.47105 * 149.70919 * 16 15 11 18 18 F 1.39907 * 109.46501 * 29.71365 * 16 15 11 19 19 C 1.46500 * 119.99858 * 216.73207 * 9 7 2 20 20 C 1.54270 * 110.03285 * 61.86889 * 19 9 7 21 21 C 1.54958 * 104.16089 * 217.13367 * 20 19 9 22 22 C 1.54888 * 102.77917 * 37.88897 * 21 20 19 23 23 C 1.53872 * 110.03712 * 304.64870 * 19 9 7 24 24 H 0.96993 * 120.00201 * 354.91724 * 1 2 3 25 25 H 1.08997 * 109.47015 * 329.99811 * 10 9 7 26 26 H 1.09000 * 109.47290 * 210.00300 * 10 9 7 27 27 H 1.07996 * 125.99605 * 179.72293 * 13 12 11 28 28 H 1.08000 * 126.59374 * 179.97438 * 14 13 12 29 29 H 1.09000 * 109.47318 * 269.71586 * 16 15 11 30 30 H 1.09011 * 110.01654 * 183.25547 * 19 9 7 31 31 H 1.09004 * 110.48559 * 335.78522 * 20 19 9 32 32 H 1.08998 * 110.48537 * 98.42343 * 20 19 9 33 33 H 1.09000 * 110.72135 * 279.57339 * 21 20 19 34 34 H 1.09005 * 110.92394 * 156.29510 * 21 20 19 35 35 H 1.09001 * 110.48677 * 203.40759 * 22 21 20 36 36 H 1.09003 * 110.60436 * 80.81188 * 22 21 20 37 37 H 1.08994 * 110.03451 * 238.56764 * 23 19 9 38 38 H 1.09003 * 110.02942 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0329 -1.2354 0.3452 9 7 1.3983 -2.3458 -0.4393 10 6 0.4645 -2.2907 -1.5667 11 6 1.2186 -2.5009 -2.8544 12 7 1.7589 -1.5615 -3.5815 13 6 2.3404 -2.1136 -4.6567 14 6 2.1584 -3.4463 -4.5905 15 7 1.4501 -3.6929 -3.4453 16 6 1.0184 -5.0045 -2.9557 17 9 0.8033 -5.8599 -4.0415 18 9 -0.1698 -4.8635 -2.2306 19 6 1.6776 -3.6246 0.2187 20 6 1.2397 -3.5652 1.6967 21 6 2.3232 -4.3809 2.4462 22 6 3.6224 -3.9947 1.6967 23 6 3.1918 -3.8981 0.2184 24 1 -0.4850 0.8367 0.0744 25 1 -0.0240 -1.3166 -1.5866 26 1 -0.2874 -3.0719 -1.4543 27 1 2.8628 -1.5826 -5.4386 28 1 2.5045 -4.1796 -5.3039 29 1 1.7904 -5.4235 -2.3103 30 1 1.1525 -4.4306 -0.2941 31 1 1.2266 -2.5339 2.0495 32 1 0.2595 -4.0249 1.8230 33 1 2.1301 -5.4501 2.3589 34 1 2.3788 -4.0842 3.4936 35 1 4.3802 -4.7679 1.8234 36 1 3.9969 -3.0334 2.0485 37 1 3.4016 -4.8371 -0.2937 38 1 3.7189 -3.0795 -0.2717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156646587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:01 Heat of formation + Delta-G solvation = -25.641060 kcal Electronic energy + Delta-G solvation = -24200.625330 eV Core-core repulsion = 20522.188241 eV Total energy + Delta-G solvation = -3678.437089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.41000 -48.52468 -42.84000 -39.31206 -36.09279 -34.36697 -33.13607 -31.04779 -29.35269 -28.38095 -27.69202 -26.72738 -24.24404 -22.34119 -21.49084 -21.28303 -20.80750 -19.31073 -19.06194 -18.34019 -17.90286 -17.13842 -16.38609 -16.23924 -15.81600 -15.71915 -15.33869 -15.07817 -14.92099 -14.74079 -14.57087 -14.47593 -14.13763 -14.01524 -13.27768 -13.13576 -12.78114 -12.68335 -12.39417 -12.16300 -11.93936 -11.79168 -11.71586 -11.70046 -11.31347 -11.18266 -10.95375 -10.79300 -10.45451 -9.29812 -8.52772 -7.84213 -5.36551 0.96396 1.26522 1.42519 1.50214 1.54559 2.25343 2.52669 2.54358 3.08886 3.30694 3.49262 3.65081 3.82096 3.83852 3.98801 4.06450 4.32276 4.53065 4.57806 4.64128 4.76248 4.88583 4.94863 4.96145 4.99151 5.20009 5.23574 5.25515 5.33293 5.50672 5.58120 5.64074 5.73985 5.84698 5.86702 6.06456 6.54335 7.18887 7.30896 7.88647 8.37618 9.18228 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.008748 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.618977 B = 3199.939708 C = 4448.203755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.021 4.021 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.289 1.289 7 C -0.237 4.237 8 H 0.050 0.950 9 N -0.571 5.571 10 C 0.207 3.793 11 C 0.230 3.770 12 N -0.525 5.525 13 C -0.048 4.048 14 C -0.050 4.050 15 N -0.520 5.520 16 C 0.484 3.516 17 F -0.181 7.181 18 F -0.184 7.184 19 C 0.160 3.840 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.129 4.129 24 H 0.251 0.749 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.188 0.812 28 H 0.214 0.786 29 H 0.181 0.819 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.431 -14.604 -3.797 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.216 1.216 7 C -0.368 4.368 8 H 0.068 0.932 9 N -0.290 5.290 10 C 0.078 3.922 11 C -0.035 4.035 12 N -0.244 5.244 13 C -0.193 4.193 14 C -0.179 4.179 15 N -0.216 5.216 16 C 0.350 3.650 17 F -0.162 7.162 18 F -0.166 7.166 19 C 0.054 3.946 20 C -0.169 4.169 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.168 4.168 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.205 0.795 28 H 0.231 0.769 29 H 0.197 0.803 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.236 -13.797 -3.635 14.883 hybrid contribution 0.125 0.732 -0.450 0.868 sum 4.361 -13.066 -4.085 14.367 Atomic orbital electron populations 1.69926 1.06422 1.25915 1.53493 1.25549 0.95467 1.00620 1.00180 0.85609 0.78971 0.81807 0.76383 1.20007 1.22621 1.21612 1.18820 0.93940 0.86050 1.37961 0.93204 1.43966 1.51106 1.03841 1.30111 1.19658 0.89892 1.03631 0.79056 1.25395 1.01097 0.78763 0.98273 1.70359 1.14890 1.32658 1.06487 1.22856 1.05389 0.92349 0.98748 1.23050 1.04040 0.99164 0.91626 1.47048 1.44769 1.07788 1.21973 1.21909 0.84927 0.77436 0.80754 1.93087 1.95707 1.69497 1.57922 1.93044 1.51118 1.95180 1.77218 1.21397 0.94020 0.86778 0.92408 1.22706 0.97880 0.99592 0.96756 1.22401 0.94212 0.99878 0.98424 1.22219 0.97700 1.00507 0.94678 1.22506 0.96996 1.00127 0.97218 0.93972 0.89620 0.91311 0.79528 0.76906 0.80268 0.91878 0.93769 0.92966 0.89891 0.91883 0.90182 0.93905 0.90989 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.07 11.42 21.65 0.25 -52.83 16 2 C -0.02 -1.15 4.95 84.86 0.42 -0.73 16 3 Si 0.94 46.90 29.61 68.60 2.03 48.93 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 6 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.24 -12.62 7.78 84.03 0.65 -11.96 16 8 H 0.05 2.73 6.97 -2.91 -0.02 2.71 16 9 N -0.57 -26.61 2.37 -678.31 -1.61 -28.22 16 10 C 0.21 9.70 5.46 85.63 0.47 10.17 16 11 C 0.23 9.79 7.39 138.13 1.02 10.81 16 12 N -0.53 -24.03 11.25 -188.13 -2.12 -26.15 16 13 C -0.05 -1.68 11.87 83.52 0.99 -0.69 16 14 C -0.05 -1.43 11.16 83.09 0.93 -0.51 16 15 N -0.52 -16.91 3.14 -532.44 -1.67 -18.58 16 16 C 0.48 12.02 5.94 127.77 0.76 12.78 16 17 F -0.18 -4.05 17.04 44.97 0.77 -3.28 16 18 F -0.18 -5.37 13.45 44.97 0.60 -4.76 16 19 C 0.16 5.94 3.41 45.72 0.16 6.09 16 20 C -0.13 -4.77 6.43 31.69 0.20 -4.57 16 21 C -0.11 -3.10 6.91 31.91 0.22 -2.88 16 22 C -0.11 -3.29 6.83 31.67 0.22 -3.07 16 23 C -0.13 -4.23 6.14 31.32 0.19 -4.04 16 24 H 0.25 14.29 8.32 -92.71 -0.77 13.52 16 25 H 0.09 4.83 5.46 -2.39 -0.01 4.82 16 26 H 0.07 3.00 5.39 -2.39 -0.01 2.99 16 27 H 0.19 5.29 8.06 -2.91 -0.02 5.26 16 28 H 0.21 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.18 3.20 7.99 -2.39 -0.02 3.18 16 30 H 0.06 2.07 6.06 -2.38 -0.01 2.05 16 31 H 0.04 2.01 7.20 -2.38 -0.02 1.99 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.59 6.75 -2.39 -0.02 1.57 16 Total: -1.00 -67.29 312.98 5.55 -61.74 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.07 Total: 11.76 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.23 Total: 11.39 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -5.15 Total: -125.78 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 1.37 Total: -8.04 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -67.29 5.55 -61.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156646587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.095 kcal (2) G-P(sol) polarization free energy of solvation -67.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds