Wall clock time and date at job start Tue Mar 31 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50703 * 109.46999 * 2 1 4 4 N 1.30839 * 125.88787 * 270.21468 * 3 2 1 5 5 N 1.40079 * 108.23569 * 180.25780 * 4 3 2 6 6 C 1.46498 * 126.03708 * 179.74894 * 5 4 3 7 7 C 1.34987 * 107.92485 * 359.71741 * 5 4 3 8 8 Cl 1.73606 * 126.13639 * 179.97438 * 7 5 4 9 9 C 1.35458 * 107.71824 * 0.02562 * 7 5 4 10 10 C 1.50704 * 126.04883 * 180.02562 * 9 7 5 11 11 N 1.46895 * 109.47030 * 90.02138 * 10 9 7 12 12 C 1.46906 * 110.99789 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.46891 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00275 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99908 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99919 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99891 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46856 * 90.00518 * 19 17 15 21 21 H 1.48503 * 109.46872 * 210.00129 * 19 17 15 22 22 H 1.48501 * 109.47227 * 330.00538 * 19 17 15 23 23 H 1.08993 * 109.47040 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46674 * 300.00640 * 1 2 3 25 25 H 1.08997 * 109.46781 * 60.00130 * 1 2 3 26 26 H 1.08996 * 109.46707 * 239.99741 * 2 1 3 27 27 H 1.08997 * 109.46781 * 119.99869 * 2 1 3 28 28 H 1.09004 * 109.47593 * 269.96016 * 6 5 4 29 29 H 1.09003 * 109.47082 * 29.95923 * 6 5 4 30 30 H 1.08998 * 109.47094 * 149.95654 * 6 5 4 31 31 H 1.08996 * 109.46908 * 330.01956 * 10 9 7 32 32 H 1.09002 * 109.46622 * 210.02130 * 10 9 7 33 33 H 1.00902 * 111.00273 * 303.95312 * 11 10 9 34 34 H 1.08992 * 109.47459 * 299.99826 * 12 11 10 35 35 H 1.09004 * 109.47040 * 59.99976 * 12 11 10 36 36 H 1.09001 * 109.47142 * 300.00160 * 13 12 11 37 37 H 1.09004 * 109.47006 * 60.00213 * 13 12 11 38 38 H 1.09001 * 109.47372 * 300.00036 * 14 13 12 39 39 H 1.08996 * 109.47261 * 60.00575 * 14 13 12 40 40 H 0.96997 * 120.00191 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2843 2.1453 -1.0600 5 7 2.7364 3.4013 -0.6353 6 6 3.1336 4.5129 -1.5028 7 6 2.7407 3.4066 0.7146 8 17 3.2187 4.7298 1.7316 9 6 2.3062 2.1937 1.1330 10 6 2.1502 1.7534 2.5658 11 7 0.7958 2.0775 3.0329 12 6 0.6067 1.6611 4.4290 13 6 -0.8122 2.0149 4.8790 14 6 -1.0093 1.5806 6.3327 15 6 -2.4071 1.9286 6.7758 16 1 -3.0870 2.4107 6.0891 17 6 -2.8179 1.6312 8.0580 18 7 -4.0378 1.9344 8.4445 19 14 -1.6422 0.7966 9.2456 20 1 -0.8806 1.8279 9.9950 21 1 -2.4135 -0.0400 10.1998 22 1 -0.6978 -0.0617 8.4861 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 4.1994 4.4417 -1.7197 29 1 2.5694 4.4664 -2.4343 30 1 2.9274 5.4578 -1.0000 31 1 2.8820 2.2704 3.1865 32 1 2.3107 0.6775 2.6347 33 1 0.5994 3.0606 2.9187 34 1 0.7562 0.5845 4.5105 35 1 1.3278 2.1771 5.0629 36 1 -0.9614 3.0916 4.7976 37 1 -1.5336 1.4991 4.2451 38 1 -0.8603 0.5039 6.4137 39 1 -0.2880 2.0960 6.9669 40 1 -4.3270 1.7249 9.3463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172064809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:49 Heat of formation + Delta-G solvation = 50.684377 kcal Electronic energy + Delta-G solvation = -19929.581096 eV Core-core repulsion = 16806.250406 eV Total energy + Delta-G solvation = -3123.330690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61305 -37.18015 -36.61118 -34.89559 -33.54450 -32.12539 -31.55768 -30.09104 -27.71381 -26.34605 -24.28565 -23.34897 -21.95518 -20.95352 -20.14045 -19.63930 -17.22995 -16.64505 -16.10197 -15.74568 -14.98133 -14.62260 -14.55578 -14.12462 -13.96540 -13.68055 -13.42877 -13.18460 -13.02445 -12.67093 -12.55166 -12.13079 -11.88906 -11.79308 -11.69022 -11.59620 -11.40139 -11.15267 -10.88238 -10.73367 -10.58959 -9.91722 -9.68429 -9.57137 -9.36737 -9.12615 -8.68153 -8.49343 -8.12664 -5.99681 -3.97083 1.19855 1.37745 2.34498 2.38801 3.33648 3.40948 3.45046 4.07374 4.49270 4.59412 4.65354 4.76682 4.86169 4.90412 5.03078 5.20338 5.34422 5.34846 5.41945 5.56651 5.63240 5.70912 5.79212 5.92123 5.94274 6.06243 6.24178 6.31210 6.42214 6.44817 6.60832 6.64146 6.97481 7.27333 7.35947 7.41921 7.49663 7.63275 7.85482 8.60099 9.06358 9.63145 11.14010 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.003322 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.445198 B = 8427.073813 C = 9104.945370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C 0.107 3.893 4 N -0.277 5.277 5 N -0.370 5.370 6 C 0.098 3.902 7 C 0.124 3.876 8 Cl -0.005 7.005 9 C -0.198 4.198 10 C 0.133 3.867 11 N -0.682 5.682 12 C 0.057 3.943 13 C -0.099 4.099 14 C -0.013 4.013 15 C -0.518 4.518 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.338 0.662 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.008 0.992 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.923 2.277 -19.778 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.059 4.059 4 N -0.100 5.100 5 N -0.154 5.154 6 C -0.043 4.043 7 C -0.030 4.030 8 Cl 0.022 6.978 9 C -0.210 4.210 10 C 0.003 3.997 11 N -0.313 5.313 12 C -0.072 4.072 13 C -0.137 4.137 14 C -0.051 4.051 15 C -0.556 4.556 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.027 0.973 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.636 1.995 -21.161 27.619 hybrid contribution 1.166 0.714 2.078 2.487 sum 18.802 2.709 -19.083 26.926 Atomic orbital electron populations 1.21730 0.93361 1.02157 1.03299 1.19981 0.97006 0.87762 1.03127 1.22162 0.97167 0.97302 0.89288 1.77492 1.21207 0.89522 1.21746 1.48454 1.51990 1.12310 1.02661 1.21921 1.01514 0.85838 0.95001 1.21519 1.05404 0.92118 0.83979 1.98414 1.90246 1.44943 1.64147 1.19573 1.11850 0.92296 0.97329 1.20171 0.90374 1.00879 0.88250 1.60569 1.24809 1.23970 1.21923 1.22157 0.98471 1.00304 0.86220 1.21432 0.93454 1.00457 0.98322 1.19541 0.97360 0.96204 0.91960 1.21169 0.96840 1.39329 0.98225 0.91056 1.25048 0.95015 0.95383 0.98190 1.69918 1.17478 1.48319 1.18780 0.86768 0.81374 0.80058 0.81013 1.20428 1.21462 1.18960 0.92099 0.90397 0.93038 0.90714 0.89640 0.90436 0.88697 0.89383 0.94661 0.89954 0.84483 0.91357 0.95840 0.93173 0.91918 0.96597 0.97338 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.90 37.16 0.37 -1.19 16 2 C -0.04 -0.40 6.31 -27.88 -0.18 -0.58 16 3 C 0.11 1.30 6.47 -82.41 -0.53 0.77 16 4 N -0.28 -3.51 12.57 33.67 0.42 -3.09 16 5 N -0.37 -4.08 4.01 -64.90 -0.26 -4.34 16 6 C 0.10 0.66 11.31 59.85 0.68 1.34 16 7 C 0.12 1.42 7.45 -17.16 -0.13 1.29 16 8 Cl -0.01 -0.05 28.34 -51.86 -1.47 -1.52 16 9 C -0.20 -2.42 5.62 -105.01 -0.59 -3.01 16 10 C 0.13 1.62 5.81 -4.98 -0.03 1.59 16 11 N -0.68 -9.56 6.49 -115.06 -0.75 -10.31 16 12 C 0.06 0.91 5.69 -3.82 -0.02 0.89 16 13 C -0.10 -1.96 5.41 -26.73 -0.14 -2.10 16 14 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 15 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 16 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 19 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.79 7.25 -51.93 -0.38 0.41 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.48 7.81 -51.93 -0.41 0.07 16 31 H 0.04 0.42 7.91 -51.93 -0.41 0.01 16 32 H 0.08 0.94 7.25 -51.93 -0.38 0.57 16 33 H 0.34 4.78 8.72 -39.29 -0.34 4.44 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -32.36 348.15 -8.31 -40.67 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.49 Total: -1.44 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -1.12 Total: -14.94 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.19 Total: -45.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.47 Total: -1.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.36 -8.31 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172064809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.356 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds