Wall clock time and date at job start Tue Mar 31 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50703 * 109.46999 * 2 1 4 4 N 1.30839 * 125.88787 * 270.21468 * 3 2 1 5 5 N 1.40079 * 108.23569 * 180.25780 * 4 3 2 6 6 C 1.46498 * 126.03708 * 179.74894 * 5 4 3 7 7 C 1.34987 * 107.92485 * 359.71741 * 5 4 3 8 8 Cl 1.73606 * 126.13639 * 179.97438 * 7 5 4 9 9 C 1.35458 * 107.71824 * 0.02562 * 7 5 4 10 10 C 1.50704 * 126.04883 * 180.02562 * 9 7 5 11 11 N 1.46895 * 109.47030 * 90.02138 * 10 9 7 12 12 C 1.46906 * 110.99789 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.46891 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00275 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99908 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99919 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99891 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46856 * 90.00518 * 19 17 15 21 21 H 1.48503 * 109.46872 * 210.00129 * 19 17 15 22 22 H 1.48501 * 109.47227 * 330.00538 * 19 17 15 23 23 H 1.08993 * 109.47040 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46674 * 300.00640 * 1 2 3 25 25 H 1.08997 * 109.46781 * 60.00130 * 1 2 3 26 26 H 1.08996 * 109.46707 * 239.99741 * 2 1 3 27 27 H 1.08997 * 109.46781 * 119.99869 * 2 1 3 28 28 H 1.09004 * 109.47593 * 269.96016 * 6 5 4 29 29 H 1.09003 * 109.47082 * 29.95923 * 6 5 4 30 30 H 1.08998 * 109.47094 * 149.95654 * 6 5 4 31 31 H 1.08996 * 109.46908 * 330.01956 * 10 9 7 32 32 H 1.09002 * 109.46622 * 210.02130 * 10 9 7 33 33 H 1.00902 * 111.00273 * 303.95312 * 11 10 9 34 34 H 1.08992 * 109.47459 * 299.99826 * 12 11 10 35 35 H 1.09004 * 109.47040 * 59.99976 * 12 11 10 36 36 H 1.09001 * 109.47142 * 300.00160 * 13 12 11 37 37 H 1.09004 * 109.47006 * 60.00213 * 13 12 11 38 38 H 1.09001 * 109.47372 * 300.00036 * 14 13 12 39 39 H 1.08996 * 109.47261 * 60.00575 * 14 13 12 40 40 H 0.96997 * 120.00191 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2843 2.1453 -1.0600 5 7 2.7364 3.4013 -0.6353 6 6 3.1336 4.5129 -1.5028 7 6 2.7407 3.4066 0.7146 8 17 3.2187 4.7298 1.7316 9 6 2.3062 2.1937 1.1330 10 6 2.1502 1.7534 2.5658 11 7 0.7958 2.0775 3.0329 12 6 0.6067 1.6611 4.4290 13 6 -0.8122 2.0149 4.8790 14 6 -1.0093 1.5806 6.3327 15 6 -2.4071 1.9286 6.7758 16 1 -3.0870 2.4107 6.0891 17 6 -2.8179 1.6312 8.0580 18 7 -4.0378 1.9344 8.4445 19 14 -1.6422 0.7966 9.2456 20 1 -0.8806 1.8279 9.9950 21 1 -2.4135 -0.0400 10.1998 22 1 -0.6978 -0.0617 8.4861 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 4.1994 4.4417 -1.7197 29 1 2.5694 4.4664 -2.4343 30 1 2.9274 5.4578 -1.0000 31 1 2.8820 2.2704 3.1865 32 1 2.3107 0.6775 2.6347 33 1 0.5994 3.0606 2.9187 34 1 0.7562 0.5845 4.5105 35 1 1.3278 2.1771 5.0629 36 1 -0.9614 3.0916 4.7976 37 1 -1.5336 1.4991 4.2451 38 1 -0.8603 0.5039 6.4137 39 1 -0.2880 2.0960 6.9669 40 1 -4.3270 1.7249 9.3463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172064809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:48 Heat of formation + Delta-G solvation = 29.576160 kcal Electronic energy + Delta-G solvation = -19930.496416 eV Core-core repulsion = 16806.250406 eV Total energy + Delta-G solvation = -3124.246010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.45398 -38.00029 -37.81618 -35.91704 -35.20909 -33.62780 -32.62219 -31.28078 -28.89862 -27.58084 -25.47280 -24.19683 -23.47528 -21.96664 -21.65480 -20.57652 -18.88002 -17.98521 -16.92984 -16.82840 -16.33830 -15.98532 -15.56725 -15.36260 -15.19995 -14.76819 -14.55760 -14.39299 -13.92455 -13.83995 -13.48938 -13.46184 -13.29427 -12.98968 -12.67049 -12.60650 -12.50743 -12.38008 -12.26589 -11.97927 -11.76596 -11.54702 -11.46565 -11.35942 -11.21936 -10.73200 -10.19759 -9.58464 -9.20383 -8.26364 -6.30452 0.36771 0.52681 1.38559 1.40979 1.49172 1.53439 1.63504 2.39585 3.09154 3.29344 3.51513 3.90218 3.97429 4.20750 4.26926 4.30458 4.37473 4.42616 4.54615 4.56137 4.60104 4.73017 4.77529 4.78622 4.94756 4.97811 5.06027 5.14385 5.18113 5.24176 5.45493 5.57128 5.57922 5.67265 5.68959 5.70841 6.16756 6.33689 6.48091 6.51025 6.78359 7.34074 8.90853 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.003322 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.445198 B = 8427.073813 C = 9104.945370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.038 4.038 3 C 0.098 3.902 4 N -0.300 5.300 5 N -0.370 5.370 6 C 0.088 3.912 7 C 0.120 3.880 8 Cl 0.007 6.993 9 C -0.215 4.215 10 C 0.139 3.861 11 N -0.684 5.684 12 C 0.071 3.929 13 C -0.090 4.090 14 C -0.009 4.009 15 C -0.533 4.533 16 H 0.027 0.973 17 C -0.001 4.001 18 N -0.955 5.955 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.242 1.242 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.336 0.664 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.502 1.616 -19.870 28.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.068 4.068 4 N -0.123 5.123 5 N -0.154 5.154 6 C -0.052 4.052 7 C -0.034 4.034 8 Cl 0.035 6.965 9 C -0.228 4.228 10 C 0.010 3.990 11 N -0.315 5.315 12 C -0.057 4.057 13 C -0.128 4.128 14 C -0.047 4.047 15 C -0.571 4.571 16 H 0.046 0.954 17 C -0.197 4.197 18 N -0.596 5.596 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.165 1.165 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.153 0.847 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.234 1.344 -21.291 29.403 hybrid contribution 0.298 1.038 2.007 2.279 sum 20.532 2.382 -19.284 28.268 Atomic orbital electron populations 1.21652 0.93893 1.02596 1.01764 1.20044 0.96376 0.87086 1.04199 1.22469 0.97038 0.98052 0.89203 1.77438 1.22071 0.90436 1.22374 1.48786 1.51149 1.12535 1.02975 1.22266 1.02745 0.85150 0.95012 1.21665 1.04927 0.92362 0.84492 1.98417 1.90078 1.44240 1.63776 1.19636 1.12972 0.92854 0.97310 1.20145 0.89090 1.01479 0.88320 1.60511 1.26481 1.23919 1.20595 1.21892 0.95576 1.00876 0.87405 1.21252 0.96053 0.99671 0.95827 1.19487 0.94231 0.96599 0.94426 1.21549 0.98796 1.38864 0.97859 0.95440 1.26097 0.96959 0.96174 1.00436 1.70083 1.19935 1.50007 1.19603 0.85590 0.79088 0.79280 0.78267 1.19202 1.21123 1.16514 0.90678 0.92561 0.93812 0.89577 0.88593 0.88714 0.87812 0.88055 0.94147 0.89067 0.84659 0.90515 0.95012 0.93987 0.93291 0.95883 0.96326 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.90 71.99 0.71 -2.16 16 2 C -0.04 -0.71 6.31 29.85 0.19 -0.53 16 3 C 0.10 2.28 6.47 43.10 0.28 2.56 16 4 N -0.30 -7.29 12.57 -47.39 -0.60 -7.89 16 5 N -0.37 -7.65 4.01 -359.26 -1.44 -9.09 16 6 C 0.09 1.03 11.31 127.77 1.44 2.47 16 7 C 0.12 2.60 7.45 83.56 0.62 3.22 16 8 Cl 0.01 0.13 28.34 -2.72 -0.08 0.05 16 9 C -0.21 -4.95 5.62 -20.11 -0.11 -5.06 16 10 C 0.14 3.11 5.81 85.56 0.50 3.61 16 11 N -0.68 -18.19 6.49 -517.93 -3.36 -21.55 16 12 C 0.07 2.13 5.69 86.30 0.49 2.63 16 13 C -0.09 -3.53 5.41 30.59 0.17 -3.36 16 14 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 15 C -0.53 -31.44 9.66 25.60 0.25 -31.19 16 16 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 17 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 18 N -0.96 -61.15 13.96 21.45 0.30 -60.85 16 19 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 1.58 7.25 -2.39 -0.02 1.56 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 0.90 7.81 -2.39 -0.02 0.88 16 31 H 0.04 0.87 7.91 -2.39 -0.02 0.85 16 32 H 0.09 1.87 7.25 -2.39 -0.02 1.85 16 33 H 0.34 9.14 8.72 -89.69 -0.78 8.36 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 35 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 2.02 8.14 -2.38 -0.02 2.01 16 38 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 39 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -70.29 348.15 2.01 -68.28 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.19 Total: 12.35 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 5.12 Total: -27.72 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -5.10 Total: -99.39 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -0.08 Total: 0.05 kcal Total: -70.29 2.01 -68.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172064809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.854 kcal (2) G-P(sol) polarization free energy of solvation -70.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds