Wall clock time and date at job start Tue Mar 31 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34630 * 117.00055 * 2 1 4 4 O 1.21510 * 120.00300 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99889 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.63197 * 359.97438 * 5 3 2 7 7 C 1.53188 * 108.77695 * 126.41136 * 6 5 3 8 8 C 1.53040 * 109.31588 * 54.63399 * 7 6 5 9 9 C 1.53046 * 109.53613 * 298.63269 * 8 7 6 10 10 H 1.08996 * 109.52471 * 301.40023 * 9 8 7 11 11 C 1.50695 * 109.49492 * 181.31533 * 9 8 7 12 12 O 1.20825 * 120.00224 * 0.16333 * 11 9 8 13 13 O 1.34232 * 119.99727 * 180.16408 * 11 9 8 14 14 C 1.45206 * 116.99878 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47129 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.46919 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00202 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99746 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99981 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47109 * 90.00314 * 20 18 16 22 22 H 1.48507 * 109.46754 * 210.00053 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99884 * 20 18 16 24 24 C 1.46928 * 120.63135 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.46813 * 59.99635 * 1 2 3 26 26 H 1.08996 * 109.46826 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46515 * 300.00260 * 1 2 3 28 28 H 1.09001 * 109.58250 * 246.19600 * 6 5 3 29 29 H 1.08997 * 109.58597 * 6.47519 * 6 5 3 30 30 H 1.09003 * 109.49645 * 174.58519 * 7 6 5 31 31 H 1.09001 * 109.50008 * 294.64720 * 7 6 5 32 32 H 1.08997 * 109.46075 * 178.61695 * 8 7 6 33 33 H 1.09002 * 109.45886 * 58.65442 * 8 7 6 34 34 H 1.09004 * 109.47122 * 299.99817 * 14 13 11 35 35 H 1.09000 * 109.47070 * 59.99842 * 14 13 11 36 36 H 1.09004 * 109.46930 * 299.99887 * 15 14 13 37 37 H 1.09004 * 109.47059 * 59.99488 * 15 14 13 38 38 H 0.96991 * 120.00238 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.58963 * 113.80110 * 24 5 3 40 40 H 1.09010 * 109.58532 * 353.37196 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2230 0.0467 0.0017 7 6 5.2133 0.1122 -1.1652 8 6 6.0243 1.4065 -1.0688 9 6 5.0825 2.6089 -1.1666 10 1 4.5369 2.5686 -2.1093 11 6 5.8852 3.8828 -1.1041 12 8 7.0876 3.8345 -0.9957 13 8 5.2643 5.0711 -1.1688 14 6 6.1007 6.2563 -1.1032 15 6 5.2222 7.5059 -1.1908 16 6 6.0902 8.7359 -1.1221 17 1 7.1613 8.6363 -1.0260 18 6 5.5170 9.9884 -1.1829 19 7 4.2127 10.1097 -1.3004 20 14 6.5930 11.5131 -1.0984 21 1 7.0027 11.9064 -2.4705 22 1 5.8304 12.6229 -0.4722 23 1 7.8010 11.2220 -0.2854 24 6 4.0907 2.5717 0.0000 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 4.7700 -0.0273 0.9415 29 1 3.5758 -0.8227 -0.1139 30 1 5.8870 -0.7435 -1.1190 31 1 4.6666 0.0942 -2.1080 32 1 6.7467 1.4439 -1.8841 33 1 6.5514 1.4346 -0.1152 34 1 6.6482 6.2629 -0.1607 35 1 6.8068 6.2491 -1.9336 36 1 4.6744 7.4996 -2.1331 37 1 4.5164 7.5128 -0.3602 38 1 3.8094 10.9908 -1.3428 39 1 4.6269 2.7039 0.9397 40 1 3.3564 3.3686 -0.1194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172185018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:40 Heat of formation + Delta-G solvation = -179.106803 kcal Electronic energy + Delta-G solvation = -22659.852005 eV Core-core repulsion = 19053.554907 eV Total energy + Delta-G solvation = -3606.297099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98201 -40.11434 -38.23833 -36.46461 -36.07804 -33.38893 -33.23553 -31.80675 -30.16740 -28.04499 -25.72528 -25.27466 -24.25324 -22.21510 -21.06348 -20.59909 -19.82221 -18.41371 -17.30390 -17.25789 -16.73505 -16.21862 -16.06971 -15.81806 -15.00332 -14.80420 -14.52186 -14.35871 -14.22597 -13.70963 -13.36995 -13.09321 -13.00229 -12.57304 -12.35674 -12.27937 -11.77703 -11.34940 -11.27288 -11.22105 -11.05477 -10.98044 -10.90436 -10.74976 -10.68921 -10.63639 -10.23595 -9.65318 -9.60571 -9.28702 -9.05468 -8.42982 -6.08620 -4.13333 1.83811 2.48269 2.64355 3.09618 3.29505 3.35665 3.39803 3.63920 4.38789 4.40685 4.53445 4.58963 4.66242 4.90989 4.93513 4.99896 5.12531 5.17315 5.23787 5.27702 5.36978 5.47202 5.50562 5.56237 5.65202 5.85755 6.02289 6.05352 6.08113 6.08728 6.13232 6.63934 6.96011 7.06091 7.57230 7.64152 7.87554 8.06307 8.15499 8.25934 8.92283 9.50973 11.02801 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.003290 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.494087 B = 8509.235275 C = 9614.642224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.648 3.352 4 O -0.562 6.562 5 N -0.593 5.593 6 C 0.109 3.891 7 C -0.134 4.134 8 C -0.106 4.106 9 C -0.097 4.097 10 H 0.112 0.888 11 C 0.463 3.537 12 O -0.512 6.512 13 O -0.354 6.354 14 C 0.075 3.925 15 C 0.024 3.976 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.137 3.863 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 -24.881 2.001 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.450 6.450 5 N -0.334 5.334 6 C -0.014 4.014 7 C -0.172 4.172 8 C -0.143 4.143 9 C -0.117 4.117 10 H 0.130 0.870 11 C 0.305 3.695 12 O -0.402 6.402 13 O -0.269 6.269 14 C 0.003 3.997 15 C -0.013 4.013 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.016 3.984 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.325 -24.418 2.034 24.727 hybrid contribution 0.547 0.997 -0.039 1.138 sum -2.778 -23.421 1.994 23.669 Atomic orbital electron populations 1.23208 0.74364 1.03351 1.02970 1.86205 1.24180 1.31036 1.87196 1.18001 0.83039 0.82225 0.76469 1.91056 1.64003 1.34767 1.55182 1.46842 1.02011 1.08304 1.76261 1.21814 0.93905 0.86484 0.99164 1.21955 0.98126 0.98209 0.98925 1.21450 0.96981 0.91555 1.04351 1.21419 0.97096 0.90893 1.02325 0.87014 1.23181 0.87199 0.86114 0.73052 1.90632 1.15885 1.88227 1.45409 1.86554 1.43319 1.15183 1.81882 1.23673 0.93929 0.81234 1.00909 1.19176 0.95291 0.87920 0.98936 1.20973 0.93489 0.90248 1.51826 0.92282 1.24989 0.95081 0.99205 0.94885 1.69974 1.09551 1.23863 1.49320 0.86474 0.80314 0.82221 0.78304 1.20498 1.21048 1.19735 1.21554 0.95292 0.84367 0.97232 0.91722 0.88032 0.91776 0.90821 0.88754 0.89728 0.91061 0.90246 0.90488 0.92237 0.92288 0.95337 0.95250 0.92692 0.90120 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -3.84 9.20 -40.30 -0.37 -4.21 16 3 C 0.65 8.40 8.43 54.06 0.46 8.86 16 4 O -0.56 -9.34 15.54 -19.28 -0.30 -9.64 16 5 N -0.59 -6.58 2.97 -178.57 -0.53 -7.11 16 6 C 0.11 0.83 6.45 -3.71 -0.02 0.80 16 7 C -0.13 -0.94 6.08 -26.61 -0.16 -1.10 16 8 C -0.11 -1.03 4.46 -26.69 -0.12 -1.15 16 9 C -0.10 -1.20 2.78 -91.66 -0.25 -1.45 16 10 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.46 7.80 7.26 36.00 0.26 8.06 16 12 O -0.51 -9.69 15.73 -18.75 -0.29 -9.98 16 13 O -0.35 -7.05 10.15 -39.26 -0.40 -7.45 16 14 C 0.07 1.67 5.40 37.16 0.20 1.87 16 15 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 16 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.14 1.70 5.64 -3.72 -0.02 1.68 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.63 6.93 -51.93 -0.36 0.27 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 34 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 35 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.11 1.70 7.00 -51.92 -0.36 1.34 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -33.97 338.58 -6.41 -40.38 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -6.18 Total: -3.64 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 0.84 Total: 5.91 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.21 Total: -33.03 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.36 Total: -31.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.97 -6.41 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172185018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.725 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds