Wall clock time and date at job start Tue Mar 31 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34630 * 117.00055 * 2 1 4 4 O 1.21510 * 120.00300 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99889 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.63197 * 359.97438 * 5 3 2 7 7 C 1.53188 * 108.77695 * 126.41136 * 6 5 3 8 8 C 1.53040 * 109.31588 * 54.63399 * 7 6 5 9 9 C 1.53046 * 109.53613 * 298.63269 * 8 7 6 10 10 H 1.08996 * 109.52471 * 301.40023 * 9 8 7 11 11 C 1.50695 * 109.49492 * 181.31533 * 9 8 7 12 12 O 1.20825 * 120.00224 * 0.16333 * 11 9 8 13 13 O 1.34232 * 119.99727 * 180.16408 * 11 9 8 14 14 C 1.45206 * 116.99878 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47129 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.46919 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00202 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99746 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99981 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47109 * 90.00314 * 20 18 16 22 22 H 1.48507 * 109.46754 * 210.00053 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99884 * 20 18 16 24 24 C 1.46928 * 120.63135 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.46813 * 59.99635 * 1 2 3 26 26 H 1.08996 * 109.46826 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46515 * 300.00260 * 1 2 3 28 28 H 1.09001 * 109.58250 * 246.19600 * 6 5 3 29 29 H 1.08997 * 109.58597 * 6.47519 * 6 5 3 30 30 H 1.09003 * 109.49645 * 174.58519 * 7 6 5 31 31 H 1.09001 * 109.50008 * 294.64720 * 7 6 5 32 32 H 1.08997 * 109.46075 * 178.61695 * 8 7 6 33 33 H 1.09002 * 109.45886 * 58.65442 * 8 7 6 34 34 H 1.09004 * 109.47122 * 299.99817 * 14 13 11 35 35 H 1.09000 * 109.47070 * 59.99842 * 14 13 11 36 36 H 1.09004 * 109.46930 * 299.99887 * 15 14 13 37 37 H 1.09004 * 109.47059 * 59.99488 * 15 14 13 38 38 H 0.96991 * 120.00238 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.58963 * 113.80110 * 24 5 3 40 40 H 1.09010 * 109.58532 * 353.37196 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2230 0.0467 0.0017 7 6 5.2133 0.1122 -1.1652 8 6 6.0243 1.4065 -1.0688 9 6 5.0825 2.6089 -1.1666 10 1 4.5369 2.5686 -2.1093 11 6 5.8852 3.8828 -1.1041 12 8 7.0876 3.8345 -0.9957 13 8 5.2643 5.0711 -1.1688 14 6 6.1007 6.2563 -1.1032 15 6 5.2222 7.5059 -1.1908 16 6 6.0902 8.7359 -1.1221 17 1 7.1613 8.6363 -1.0260 18 6 5.5170 9.9884 -1.1829 19 7 4.2127 10.1097 -1.3004 20 14 6.5930 11.5131 -1.0984 21 1 7.0027 11.9064 -2.4705 22 1 5.8304 12.6229 -0.4722 23 1 7.8010 11.2220 -0.2854 24 6 4.0907 2.5717 0.0000 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 4.7700 -0.0273 0.9415 29 1 3.5758 -0.8227 -0.1139 30 1 5.8870 -0.7435 -1.1190 31 1 4.6666 0.0942 -2.1080 32 1 6.7467 1.4439 -1.8841 33 1 6.5514 1.4346 -0.1152 34 1 6.6482 6.2629 -0.1607 35 1 6.8068 6.2491 -1.9336 36 1 4.6744 7.4996 -2.1331 37 1 4.5164 7.5128 -0.3602 38 1 3.8094 10.9908 -1.3428 39 1 4.6269 2.7039 0.9397 40 1 3.3564 3.3686 -0.1194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172185018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:39 Heat of formation + Delta-G solvation = -200.518067 kcal Electronic energy + Delta-G solvation = -22660.780467 eV Core-core repulsion = 19053.554907 eV Total energy + Delta-G solvation = -3607.225561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.03746 -41.40287 -39.20788 -37.75956 -37.30106 -35.47031 -34.23234 -32.81338 -32.05828 -28.75687 -27.34107 -26.28498 -25.54580 -23.33371 -22.73188 -21.84292 -20.83175 -19.38842 -18.86645 -18.21338 -18.09213 -17.72983 -17.51880 -17.20203 -16.48752 -15.96394 -15.76501 -15.20467 -15.07190 -14.77164 -14.55965 -14.49126 -14.35091 -13.89921 -13.75017 -13.16357 -13.04377 -12.95930 -12.66046 -12.61534 -12.54253 -12.14012 -12.05801 -11.89145 -11.81669 -11.80257 -11.56636 -11.51947 -11.48593 -11.29220 -10.62761 -9.94747 -8.27840 -6.41816 0.87560 1.18655 1.39997 1.42465 1.53423 1.62910 1.73466 2.39188 2.86831 3.06384 3.45586 3.57494 3.64225 3.96063 4.07336 4.08746 4.20919 4.25030 4.36186 4.37835 4.42300 4.50125 4.60212 4.67691 4.71220 4.72662 4.85733 4.99125 5.10952 5.22084 5.22419 5.32201 5.34825 5.44290 5.52862 5.72798 6.04568 6.16517 6.65763 6.72889 7.11605 7.28219 8.84879 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.003290 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.494087 B = 8509.235275 C = 9614.642224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.364 6.364 3 C 0.645 3.355 4 O -0.609 6.609 5 N -0.589 5.589 6 C 0.104 3.896 7 C -0.123 4.123 8 C -0.102 4.102 9 C -0.086 4.086 10 H 0.119 0.881 11 C 0.463 3.537 12 O -0.529 6.529 13 O -0.367 6.367 14 C 0.090 3.910 15 C 0.029 3.971 16 C -0.550 4.550 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.976 3.024 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.261 1.261 24 C 0.140 3.860 25 H 0.057 0.943 26 H 0.142 0.858 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.268 0.732 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 -26.776 2.132 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.277 6.277 3 C 0.399 3.601 4 O -0.500 6.500 5 N -0.329 5.329 6 C -0.017 4.017 7 C -0.161 4.161 8 C -0.139 4.139 9 C -0.106 4.106 10 H 0.137 0.863 11 C 0.306 3.694 12 O -0.419 6.419 13 O -0.283 6.283 14 C 0.017 3.983 15 C -0.008 4.008 16 C -0.588 4.588 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.567 5.567 20 Si 0.799 3.201 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.186 1.186 24 C 0.018 3.982 25 H 0.076 0.924 26 H 0.160 0.840 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.022 0.978 37 H 0.023 0.977 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.052 -26.378 2.164 26.546 hybrid contribution 0.098 1.477 -0.078 1.482 sum -1.954 -24.902 2.086 25.065 Atomic orbital electron populations 1.23520 0.72873 1.05758 1.02389 1.86220 1.25570 1.29217 1.86707 1.18235 0.83493 0.82349 0.75974 1.91028 1.65199 1.36471 1.57338 1.46916 1.01752 1.08867 1.75367 1.22132 0.93975 0.85199 1.00356 1.21936 0.98021 0.97515 0.98639 1.21499 0.96656 0.91403 1.04384 1.21516 0.97177 0.89303 1.02573 0.86322 1.24060 0.87450 0.86085 0.71798 1.90617 1.16826 1.88295 1.46155 1.86555 1.43432 1.15786 1.82549 1.23175 0.92924 0.81028 1.01130 1.18989 0.95158 0.90157 0.96504 1.21379 0.94105 0.91247 1.52056 0.91485 1.26011 0.96510 1.02875 0.94067 1.70107 1.11582 1.24983 1.50033 0.85292 0.78477 0.77545 0.78794 1.19481 1.20454 1.18558 1.21365 0.94585 0.84637 0.97630 0.92419 0.84035 0.92374 0.89140 0.87182 0.86594 0.90955 0.90377 0.90392 0.91891 0.91972 0.97790 0.97745 0.92347 0.89275 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 10.56 113.37 1.20 1.87 16 2 O -0.36 -6.94 9.20 -55.39 -0.51 -7.45 16 3 C 0.64 16.45 8.43 129.79 1.09 17.54 16 4 O -0.61 -20.91 15.54 19.81 0.31 -20.61 16 5 N -0.59 -12.35 2.97 -949.29 -2.82 -15.17 16 6 C 0.10 1.26 6.45 86.36 0.56 1.82 16 7 C -0.12 -1.30 6.08 30.67 0.19 -1.12 16 8 C -0.10 -1.75 4.46 30.62 0.14 -1.61 16 9 C -0.09 -2.05 2.78 -11.47 -0.03 -2.08 16 10 H 0.12 2.70 8.14 -2.39 -0.02 2.69 16 11 C 0.46 15.59 7.26 71.23 0.52 16.11 16 12 O -0.53 -19.73 15.73 21.97 0.35 -19.38 16 13 O -0.37 -15.04 10.15 -51.44 -0.52 -15.56 16 14 C 0.09 4.13 5.40 71.98 0.39 4.52 16 15 C 0.03 1.61 5.35 29.85 0.16 1.77 16 16 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 17 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 18 C 0.00 0.25 5.46 84.66 0.46 0.71 16 19 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 20 Si 0.98 44.20 29.54 68.60 2.03 46.23 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 C 0.14 3.46 5.64 86.35 0.49 3.95 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 1.06 6.93 -2.39 -0.02 1.04 16 30 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.41 8.07 -2.39 -0.02 1.39 16 33 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 34 H 0.06 2.81 8.13 -2.38 -0.02 2.79 16 35 H 0.06 2.78 8.13 -2.39 -0.02 2.76 16 36 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 37 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.64 7.00 -2.38 -0.02 2.63 16 Total: -1.00 -75.33 338.58 5.52 -69.81 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.02 Total: 6.69 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 5.39 Total: 11.99 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -2.54 Total: -71.72 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -0.38 Total: -63.00 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -75.33 5.52 -69.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172185018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.707 kcal (2) G-P(sol) polarization free energy of solvation -75.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds